Wall clock time and date at job start Sun Mar 7 2021 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42107 * 108.57804 * 2 1 4 4 O 1.42095 * 108.57891 * 228.97339 * 2 1 3 5 5 C 1.81394 * 101.92128 * 114.48479 * 2 1 3 6 6 C 1.53002 * 109.47361 * 179.97438 * 5 2 1 7 7 H 1.09003 * 112.84327 * 43.80766 * 6 5 2 8 8 C 1.53780 * 113.61629 * 175.00106 * 6 5 2 9 9 C 1.53780 * 87.08118 * 139.98409 * 8 6 5 10 10 H 1.09003 * 113.61599 * 89.19785 * 9 8 6 11 11 N 1.46499 * 113.61714 * 220.02037 * 9 8 6 12 12 C 1.34777 * 120.00199 * 205.00175 * 11 9 8 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 9 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 9 15 15 C 1.50700 * 109.46869 * 179.72354 * 14 12 11 16 16 C 1.34852 * 125.88652 * 274.68739 * 15 14 12 17 17 C 1.40898 * 107.41326 * 179.88962 * 16 15 14 18 18 C 1.34852 * 107.41530 * 0.37892 * 17 16 15 19 19 C 1.50701 * 125.88764 * 179.73405 * 18 17 16 20 20 O 1.42896 * 109.47264 * 245.03824 * 19 18 17 21 21 Si 1.86298 * 109.47236 * 5.04245 * 19 18 17 22 22 N 1.36338 * 125.88916 * 95.00101 * 15 14 12 23 23 C 1.53783 * 87.08250 * 334.56795 * 9 8 6 24 24 H 1.09005 * 109.47408 * 305.51526 * 1 2 3 25 25 H 1.09001 * 109.47243 * 65.51303 * 1 2 3 26 26 H 1.09002 * 109.47007 * 185.51649 * 1 2 3 27 27 H 1.09004 * 109.47243 * 60.00052 * 5 2 1 28 28 H 1.09006 * 109.47729 * 300.00093 * 5 2 1 29 29 H 1.08998 * 113.61271 * 25.43333 * 8 6 5 30 30 H 1.09002 * 113.69026 * 254.53919 * 8 6 5 31 31 H 0.97000 * 119.99484 * 24.99272 * 11 9 8 32 32 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 33 33 H 1.08994 * 109.46990 * 59.72065 * 14 12 11 34 34 H 1.08000 * 126.29459 * 0.02562 * 16 15 14 35 35 H 1.07997 * 126.28782 * 180.12564 * 17 16 15 36 36 H 1.09010 * 109.46843 * 125.03845 * 19 18 17 37 37 H 0.96703 * 113.99759 * 60.00307 * 20 19 18 38 38 H 1.48505 * 110.00056 * 58.67828 * 21 19 18 39 39 H 1.48501 * 110.00184 * 179.97438 * 21 19 18 40 40 H 0.97001 * 125.64046 * 359.97438 * 22 15 14 41 41 H 1.08995 * 113.61760 * 139.97795 * 23 9 8 42 42 H 1.08998 * 113.61505 * 270.89080 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6152 6 6 3.7055 -0.8195 1.7979 7 1 4.2205 0.0879 1.4826 8 6 4.1317 -1.3181 3.1888 9 6 5.2283 -2.1270 2.4762 10 1 6.1613 -1.5785 2.3468 11 7 5.4285 -3.4655 3.0371 12 6 6.6170 -4.0849 2.8951 13 8 7.5207 -3.5344 2.3025 14 6 6.8208 -5.4644 3.4667 15 6 8.2225 -5.9300 3.1673 16 6 8.6289 -6.5359 2.0332 17 6 10.0067 -6.7987 2.1659 18 6 10.3879 -6.3511 3.3796 19 6 11.7795 -6.4288 3.9528 20 8 11.7775 -7.2900 5.0931 21 14 12.9444 -7.1051 2.6657 22 7 9.2970 -5.8169 3.9988 23 6 4.3237 -2.1092 1.2327 24 1 -0.3634 0.5970 0.8365 25 1 -0.3634 0.4260 -0.9352 26 1 -0.3633 -1.0229 0.0988 27 1 1.7610 -1.7369 1.6665 28 1 1.7610 -0.1170 2.4043 29 1 3.3811 -1.9377 3.6795 30 1 4.5202 -0.5316 3.8359 31 1 4.7055 -3.9059 3.5108 32 1 6.6700 -5.4364 4.5459 33 1 6.1054 -6.1531 3.0176 34 1 8.0121 -6.7736 1.1791 35 1 10.6401 -7.2752 1.4324 36 1 12.1059 -5.4323 4.2505 37 1 11.4968 -8.1954 4.9017 38 1 12.9315 -6.2356 1.4619 39 1 14.3203 -7.1861 3.2184 40 1 9.2871 -5.4216 4.8846 41 1 4.8669 -1.9604 0.2996 42 1 3.6255 -2.9450 1.1887 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534806_14644196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:03:28 Heat of formation + Delta-G solvation = -63.497279 kcal Electronic energy + Delta-G solvation = -25303.154071 eV Core-core repulsion = 21379.032524 eV Total energy + Delta-G solvation = -3924.121547 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -42.28198 -41.17099 -39.49036 -37.99886 -37.65513 -37.03254 -34.88277 -33.13270 -31.84624 -31.29969 -30.45996 -29.24963 -26.93202 -25.45828 -23.99357 -21.82294 -21.30062 -21.20078 -20.72283 -19.93544 -18.89863 -18.13552 -18.01710 -17.58364 -17.17641 -16.99550 -16.52787 -16.39388 -16.29211 -16.09126 -15.23773 -15.14408 -14.85384 -14.50159 -14.40949 -14.30339 -14.26018 -14.01265 -13.82828 -13.76060 -13.70570 -13.63423 -13.23578 -13.08618 -13.00138 -12.92720 -12.61119 -12.24170 -12.09578 -11.99346 -11.88127 -11.62838 -11.30746 -10.86368 -10.58526 -10.10470 -9.69681 -8.88533 -4.94164 -1.12089 1.17691 1.29982 1.60011 1.65207 1.75660 1.92417 2.02629 2.27105 2.51247 2.57090 2.86431 3.17580 3.21907 3.42444 3.48270 3.54521 3.63198 3.69907 3.73507 3.84425 3.85653 3.95183 4.00788 4.04069 4.23221 4.34433 4.44863 4.48033 4.54703 4.55251 4.57632 4.61059 4.77241 4.84405 4.93306 5.07439 5.33768 5.37550 5.43466 6.07451 6.21691 6.40076 6.54904 6.67625 7.19781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.418 3.582 3 O -0.938 6.938 4 O -0.933 6.933 5 C -0.600 4.600 6 C -0.103 4.103 7 H 0.110 0.890 8 C -0.131 4.131 9 C 0.122 3.878 10 H 0.119 0.881 11 N -0.723 5.723 12 C 0.511 3.489 13 O -0.521 6.521 14 C -0.072 4.072 15 C 0.035 3.965 16 C -0.173 4.173 17 C -0.186 4.186 18 C -0.010 4.010 19 C -0.050 4.050 20 O -0.547 6.547 21 Si 0.719 3.281 22 N -0.536 5.536 23 C -0.152 4.152 24 H 0.128 0.872 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.401 0.599 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.109 0.891 37 H 0.381 0.619 38 H -0.255 1.255 39 H -0.256 1.256 40 H 0.412 0.588 41 H 0.085 0.915 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.271 -4.164 4.569 9.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.600 3.400 3 O -0.935 6.935 4 O -0.930 6.930 5 C -0.729 4.729 6 C -0.123 4.123 7 H 0.128 0.872 8 C -0.170 4.170 9 C 0.017 3.983 10 H 0.137 0.863 11 N -0.375 5.375 12 C 0.297 3.703 13 O -0.395 6.395 14 C -0.113 4.113 15 C -0.079 4.079 16 C -0.197 4.197 17 C -0.211 4.211 18 C -0.124 4.124 19 C -0.160 4.160 20 O -0.352 6.352 21 Si 0.620 3.380 22 N -0.130 5.130 23 C -0.191 4.191 24 H 0.147 0.853 25 H 0.149 0.851 26 H 0.147 0.853 27 H 0.152 0.848 28 H 0.155 0.845 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.236 0.764 32 H 0.118 0.882 33 H 0.136 0.864 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.127 0.873 37 H 0.229 0.771 38 H -0.179 1.179 39 H -0.181 1.181 40 H 0.248 0.752 41 H 0.104 0.896 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.098 -2.707 3.423 6.711 hybrid contribution -1.626 0.341 1.590 2.300 sum -6.724 -2.366 5.014 8.715 Atomic orbital electron populations 1.30302 1.26850 1.11595 1.12035 1.07959 0.78320 0.75950 0.77798 1.93625 1.79021 1.34422 1.86448 1.93624 1.78824 1.66876 1.53690 1.30300 1.04789 1.14171 1.23604 1.22075 0.90793 1.00056 0.99353 0.87158 1.23373 0.97919 0.99869 0.95853 1.22475 0.98657 0.83384 0.93765 0.86335 1.45962 1.14665 1.18202 1.58685 1.20675 0.82206 0.87604 0.79833 1.90778 1.41659 1.66478 1.40605 1.20137 0.93676 0.94537 1.02909 1.19466 0.88435 1.06849 0.93111 1.20599 0.95409 1.05986 0.97731 1.20651 0.96040 1.07880 0.96563 1.20827 0.89709 1.06467 0.95383 1.24832 0.96331 0.98000 0.96845 1.86479 1.90550 1.24834 1.33346 0.94162 0.76979 0.90042 0.76851 1.41789 1.07402 1.47526 1.16321 1.23689 0.99236 0.96768 0.99364 0.85326 0.85079 0.85314 0.84781 0.84535 0.88953 0.89959 0.76412 0.88235 0.86420 0.84547 0.84047 0.87328 0.77125 1.17903 1.18104 0.75161 0.89639 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 3.10 10.62 101.05 1.07 4.18 16 2 S 2.42 -4.39 5.35 -107.50 -0.58 -4.97 16 3 O -0.94 -2.40 18.10 -57.83 -1.05 -3.45 16 4 O -0.93 -2.13 18.10 -57.83 -1.05 -3.17 16 5 C -0.60 2.82 5.64 37.16 0.21 3.03 16 6 C -0.10 0.25 3.66 -89.81 -0.33 -0.08 16 7 H 0.11 -0.20 8.13 -51.93 -0.42 -0.63 16 8 C -0.13 0.45 7.39 -25.92 -0.19 0.26 16 9 C 0.12 -0.15 4.24 -67.12 -0.28 -0.43 16 10 H 0.12 0.11 7.46 -51.93 -0.39 -0.27 16 11 N -0.72 1.55 5.35 -53.02 -0.28 1.27 16 12 C 0.51 0.37 7.82 -10.98 -0.09 0.29 16 13 O -0.52 -3.02 15.63 5.55 0.09 -2.93 16 14 C -0.07 0.14 6.24 -29.03 -0.18 -0.04 16 15 C 0.03 0.05 5.66 -81.79 -0.46 -0.41 16 16 C -0.17 -0.41 10.77 -39.78 -0.43 -0.84 16 17 C -0.19 -0.39 9.37 -39.78 -0.37 -0.76 16 18 C -0.01 -0.02 6.50 -81.79 -0.53 -0.55 16 19 C -0.05 -0.04 3.08 36.01 0.11 0.07 16 20 O -0.55 -0.32 12.88 -35.23 -0.45 -0.77 16 21 Si 0.72 -0.15 30.60 -169.99 -5.20 -5.35 16 22 N -0.54 -0.71 6.07 -5.44 -0.03 -0.75 16 23 C -0.15 0.18 7.43 -25.92 -0.19 -0.01 16 24 H 0.13 -0.82 8.14 -51.92 -0.42 -1.25 16 25 H 0.13 -0.57 8.14 -51.92 -0.42 -0.99 16 26 H 0.13 -0.84 8.14 -51.92 -0.42 -1.26 16 27 H 0.13 -0.94 7.84 -51.92 -0.41 -1.34 16 28 H 0.14 -0.94 8.14 -51.92 -0.42 -1.36 16 29 H 0.09 -0.48 8.08 -51.93 -0.42 -0.90 16 30 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 31 H 0.40 -2.15 8.73 -40.82 -0.36 -2.51 16 32 H 0.10 -0.43 8.14 -51.93 -0.42 -0.85 16 33 H 0.12 -0.49 8.14 -51.93 -0.42 -0.91 16 34 H 0.14 0.17 8.06 -52.49 -0.42 -0.25 16 35 H 0.14 0.03 6.24 -52.49 -0.33 -0.30 16 36 H 0.11 0.15 7.96 -51.92 -0.41 -0.26 16 37 H 0.38 -1.20 8.70 45.56 0.40 -0.81 16 38 H -0.25 -0.71 7.11 56.52 0.40 -0.31 16 39 H -0.26 -0.66 7.11 56.52 0.40 -0.26 16 40 H 0.41 -0.13 8.96 -40.82 -0.37 -0.50 16 41 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 42 H 0.09 -0.23 7.89 -51.93 -0.41 -0.64 16 LS Contribution 367.91 15.07 5.54 5.54 Total: 0.00 -15.75 367.91 -10.79 -26.54 By element: Atomic # 1 Polarization: -10.56 SS G_CDS: -6.11 Total: -16.67 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -1.67 Total: 4.70 kcal Atomic # 7 Polarization: 0.84 SS G_CDS: -0.32 Total: 0.52 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -2.46 Total: -10.33 kcal Atomic # 14 Polarization: -0.15 SS G_CDS: -5.20 Total: -5.35 kcal Atomic # 16 Polarization: -4.39 SS G_CDS: -0.58 Total: -4.97 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -15.75 -10.79 -26.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_14644196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.953 kcal (2) G-P(sol) polarization free energy of solvation -15.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds