Wall clock time and date at job start Sun Mar 7 2021 06:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42097 * 108.57715 * 2 1 4 4 O 1.42095 * 108.58150 * 228.96889 * 2 1 3 5 5 C 1.81405 * 101.91866 * 114.48422 * 2 1 3 6 6 C 1.53005 * 109.46946 * 180.02562 * 5 2 1 7 7 H 1.09001 * 112.84691 * 316.19331 * 6 5 2 8 8 C 1.53952 * 113.66849 * 87.43803 * 6 5 2 9 9 C 1.53785 * 87.01835 * 139.93409 * 8 6 5 10 10 H 1.08999 * 113.61452 * 89.23125 * 9 8 6 11 11 N 1.46502 * 113.61152 * 220.05013 * 9 8 6 12 12 C 1.34778 * 119.99802 * 254.13199 * 11 9 8 13 13 O 1.21276 * 120.00029 * 0.02562 * 12 11 9 14 14 C 1.50692 * 119.99924 * 179.97438 * 12 11 9 15 15 O 1.42900 * 109.47397 * 180.02562 * 14 12 11 16 16 C 1.35899 * 117.00511 * 180.02562 * 15 14 12 17 17 C 1.38726 * 120.05721 * 180.02562 * 16 15 14 18 18 C 1.38153 * 119.94564 * 180.02562 * 17 16 15 19 19 C 1.38269 * 120.05022 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.93900 * 179.97438 * 19 18 17 21 21 O 1.42896 * 109.47341 * 300.00123 * 20 19 18 22 22 Si 1.86300 * 109.46849 * 180.02562 * 20 19 18 23 23 C 1.38264 * 120.11486 * 0.25533 * 19 18 17 24 24 C 1.38143 * 120.05501 * 359.44957 * 23 19 18 25 25 C 1.53780 * 87.17240 * 334.63833 * 9 8 6 26 26 H 1.08999 * 109.47364 * 305.51555 * 1 2 3 27 27 H 1.08996 * 109.46927 * 65.51935 * 1 2 3 28 28 H 1.09003 * 109.46805 * 185.51132 * 1 2 3 29 29 H 1.08996 * 109.47330 * 60.00517 * 5 2 1 30 30 H 1.09005 * 109.47254 * 299.99779 * 5 2 1 31 31 H 1.08994 * 113.61133 * 25.41206 * 8 6 5 32 32 H 1.08995 * 113.66509 * 254.46125 * 8 6 5 33 33 H 0.96997 * 120.00147 * 74.13946 * 11 9 8 34 34 H 1.09007 * 109.47228 * 60.00286 * 14 12 11 35 35 H 1.09003 * 109.47771 * 300.00612 * 14 12 11 36 36 H 1.07998 * 120.03265 * 0.03855 * 17 16 15 37 37 H 1.07995 * 119.97802 * 179.97438 * 18 17 16 38 38 H 1.09000 * 109.46989 * 60.00454 * 20 19 18 39 39 H 0.96693 * 114.00306 * 299.99773 * 21 20 19 40 40 H 1.48506 * 110.00048 * 58.68772 * 22 20 19 41 41 H 1.48502 * 109.99996 * 180.02562 * 22 20 19 42 42 H 1.08002 * 119.97450 * 179.70367 * 23 19 18 43 43 H 1.08001 * 120.02763 * 180.30227 * 24 23 19 44 44 H 1.09005 * 113.61514 * 139.93921 * 25 9 8 45 45 H 1.09000 * 113.61531 * 270.84147 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0160 5 6 2.1887 -0.7356 1.6153 6 6 3.7055 -0.8184 1.7986 7 1 4.2206 -1.1761 0.9071 8 6 4.3258 0.4560 2.3996 9 6 5.2283 -0.4717 3.2302 10 1 6.1613 -0.7342 2.7315 11 7 5.4284 -0.0162 4.6081 12 6 6.6068 0.5259 4.9743 13 8 7.5013 0.6370 4.1630 14 6 6.8123 0.9950 6.3915 15 8 8.1311 1.5274 6.5305 16 6 8.4809 1.9970 7.7569 17 6 9.7458 2.5283 7.9627 18 6 10.0991 3.0046 9.2105 19 6 9.1933 2.9516 10.2538 20 6 9.5815 3.4714 11.6140 21 8 10.7104 2.7414 12.0985 22 14 8.1532 3.2583 12.7910 23 6 7.9340 2.4173 10.0527 24 6 7.5738 1.9453 8.8054 25 6 4.1317 -1.5403 3.0877 26 1 -0.3634 0.5970 0.8365 27 1 -0.3633 0.4258 -0.9353 28 1 -0.3633 -1.0230 0.0987 29 1 1.7611 -1.7369 1.6666 30 1 1.7610 -0.1169 2.4043 31 1 3.6284 1.0394 3.0007 32 1 4.8706 1.0611 1.6750 33 1 4.7128 -0.1048 5.2569 34 1 6.6855 0.1548 7.0744 35 1 6.0818 1.7687 6.6279 36 1 10.4537 2.5697 7.1482 37 1 11.0838 3.4179 9.3714 38 1 9.8369 4.5284 11.5397 39 1 10.5548 1.7915 12.1899 40 1 7.7752 1.8247 12.8767 41 1 8.5231 3.7676 14.1360 42 1 7.2299 2.3727 10.8705 43 1 6.5883 1.5325 8.6476 44 1 4.5201 -2.5446 2.9178 45 1 3.3812 -1.5037 3.8773 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_2989410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:03:52 Heat of formation + Delta-G solvation = -119.653990 kcal Electronic energy + Delta-G solvation = -28171.423044 eV Core-core repulsion = 23863.383937 eV Total energy + Delta-G solvation = -4308.039106 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.63722 -40.98798 -39.71877 -38.86498 -37.96447 -37.23371 -36.99032 -34.98933 -32.43010 -31.75952 -31.23977 -30.25301 -29.23667 -26.74791 -26.25680 -24.48828 -23.60741 -22.34055 -21.71750 -20.74976 -19.79348 -19.50614 -18.50586 -18.14071 -17.82862 -17.42743 -17.40292 -16.98965 -16.92305 -16.66907 -16.25315 -16.14625 -16.09869 -15.60257 -15.54799 -15.06539 -14.61737 -14.60360 -14.36942 -14.04018 -13.89543 -13.74997 -13.61906 -13.53709 -13.44792 -13.42551 -13.20256 -13.05430 -12.99502 -12.63589 -12.29151 -12.14605 -12.05293 -12.01391 -11.93613 -11.62623 -11.49141 -11.11538 -10.93100 -10.58520 -10.14875 -10.03431 -9.23228 -4.89794 -0.89444 0.27556 0.31200 1.34725 1.42066 1.49681 1.62422 1.93027 1.99792 2.59300 2.65276 2.79296 3.12444 3.36294 3.43527 3.44619 3.52817 3.66615 3.72677 3.75389 3.83372 3.95002 4.03512 4.06999 4.10901 4.11591 4.18876 4.31384 4.34407 4.42957 4.54413 4.56494 4.69805 4.73257 4.75434 4.82629 4.95754 4.97623 4.99790 5.04590 5.16230 5.17042 5.25745 5.49684 5.50549 5.70319 6.27184 6.48435 6.51319 7.14121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.401 3.599 3 O -0.989 6.989 4 O -0.997 6.997 5 C -0.577 4.577 6 C -0.113 4.113 7 H 0.093 0.907 8 C -0.159 4.159 9 C 0.112 3.888 10 H 0.088 0.912 11 N -0.695 5.695 12 C 0.510 3.490 13 O -0.577 6.577 14 C 0.036 3.964 15 O -0.322 6.322 16 C 0.121 3.879 17 C -0.168 4.168 18 C -0.061 4.061 19 C -0.159 4.159 20 C -0.084 4.084 21 O -0.552 6.552 22 Si 0.774 3.226 23 C -0.075 4.075 24 C -0.199 4.199 25 C -0.108 4.108 26 H 0.155 0.845 27 H 0.125 0.875 28 H 0.154 0.846 29 H 0.172 0.828 30 H 0.171 0.829 31 H 0.115 0.885 32 H 0.053 0.947 33 H 0.425 0.575 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.120 0.880 39 H 0.386 0.614 40 H -0.277 1.277 41 H -0.308 1.308 42 H 0.155 0.845 43 H 0.167 0.833 44 H 0.087 0.913 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.939 -3.350 6.685 14.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.591 3.409 3 O -0.986 6.986 4 O -0.994 6.994 5 C -0.708 4.708 6 C -0.133 4.133 7 H 0.111 0.889 8 C -0.197 4.197 9 C 0.007 3.993 10 H 0.107 0.893 11 N -0.349 5.349 12 C 0.296 3.704 13 O -0.456 6.456 14 C -0.041 4.041 15 O -0.236 6.236 16 C 0.076 3.924 17 C -0.187 4.187 18 C -0.079 4.079 19 C -0.159 4.159 20 C -0.192 4.192 21 O -0.360 6.360 22 Si 0.679 3.321 23 C -0.092 4.092 24 C -0.217 4.217 25 C -0.147 4.147 26 H 0.174 0.826 27 H 0.144 0.856 28 H 0.172 0.828 29 H 0.190 0.810 30 H 0.189 0.811 31 H 0.133 0.867 32 H 0.072 0.928 33 H 0.264 0.736 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.150 0.850 38 H 0.138 0.862 39 H 0.235 0.765 40 H -0.203 1.203 41 H -0.237 1.237 42 H 0.172 0.828 43 H 0.185 0.815 44 H 0.106 0.894 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.619 -2.744 5.946 13.337 hybrid contribution 0.551 -1.003 0.245 1.171 sum -11.067 -3.747 6.191 13.223 Atomic orbital electron populations 1.30129 1.22399 1.13864 1.13054 1.07939 0.79837 0.74498 0.78638 1.93556 1.80781 1.36771 1.87531 1.93550 1.81017 1.67725 1.57130 1.30118 1.03168 1.16441 1.21089 1.22128 0.92436 0.98661 1.00121 0.88908 1.23805 0.99558 0.96776 0.99596 1.22504 0.98445 0.96436 0.81966 0.89344 1.45617 1.14870 1.61768 1.12686 1.20691 0.82593 0.77236 0.89851 1.90772 1.43976 1.56091 1.54736 1.22783 0.84490 1.02378 0.94466 1.86135 1.32816 1.75321 1.29280 1.19222 0.94469 0.94701 0.84058 1.20618 0.95472 1.03931 0.98671 1.20900 0.99662 0.96462 0.90873 1.20299 0.95422 1.03813 0.96404 1.25271 0.98308 0.99268 0.96360 1.86567 1.37318 1.25049 1.87086 0.94132 0.80964 0.81429 0.75579 1.21077 0.95307 0.95496 0.97333 1.21510 1.01191 1.06526 0.92459 1.23340 0.96914 0.97849 0.96587 0.82628 0.85606 0.82781 0.81020 0.81112 0.86688 0.92830 0.73613 0.85414 0.85249 0.85814 0.85016 0.86186 0.76531 1.20324 1.23692 0.82795 0.81527 0.89446 0.85356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.69 10.62 113.37 1.20 8.90 16 2 S 2.40 -9.04 5.35 -56.49 -0.30 -9.34 16 3 O -0.99 -5.88 18.10 -127.37 -2.30 -8.19 16 4 O -1.00 -6.61 18.10 -127.37 -2.30 -8.91 16 5 C -0.58 7.36 5.65 71.98 0.41 7.76 16 6 C -0.11 0.71 3.66 -10.21 -0.04 0.67 16 7 H 0.09 -0.24 8.13 -2.39 -0.02 -0.26 16 8 C -0.16 0.44 7.45 31.18 0.23 0.67 16 9 C 0.11 -0.35 4.21 45.52 0.19 -0.15 16 10 H 0.09 0.32 7.50 -2.39 -0.02 0.30 16 11 N -0.70 4.37 5.36 -440.04 -2.36 2.01 16 12 C 0.51 1.00 7.91 87.65 0.69 1.69 16 13 O -0.58 -8.67 16.12 16.02 0.26 -8.41 16 14 C 0.04 -0.17 5.22 71.23 0.37 0.21 16 15 O -0.32 -1.79 9.67 -73.38 -0.71 -2.50 16 16 C 0.12 0.35 6.69 22.51 0.15 0.50 16 17 C -0.17 -0.83 9.99 22.37 0.22 -0.61 16 18 C -0.06 -0.17 9.61 22.26 0.21 0.05 16 19 C -0.16 0.05 5.39 -19.85 -0.11 -0.06 16 20 C -0.08 0.09 2.82 71.24 0.20 0.29 16 21 O -0.55 -1.49 12.76 -148.98 -1.90 -3.39 16 22 Si 0.77 -2.90 29.78 68.60 2.04 -0.86 16 23 C -0.07 0.28 8.66 22.25 0.19 0.47 16 24 C -0.20 0.73 9.04 22.37 0.20 0.93 16 25 C -0.11 1.11 7.39 31.12 0.23 1.34 16 26 H 0.16 -2.65 8.14 -2.39 -0.02 -2.67 16 27 H 0.13 -1.25 8.14 -2.39 -0.02 -1.27 16 28 H 0.15 -2.57 8.14 -2.39 -0.02 -2.59 16 29 H 0.17 -3.27 8.14 -2.39 -0.02 -3.29 16 30 H 0.17 -3.35 7.85 -2.39 -0.02 -3.37 16 31 H 0.11 -0.85 7.90 -2.39 -0.02 -0.87 16 32 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.42 -6.62 8.71 -92.71 -0.81 -7.43 16 34 H 0.13 -1.47 7.66 -2.38 -0.02 -1.49 16 35 H 0.13 -1.50 7.67 -2.39 -0.02 -1.52 16 36 H 0.12 0.73 8.06 -2.91 -0.02 0.71 16 37 H 0.13 0.28 8.06 -2.91 -0.02 0.26 16 38 H 0.12 -0.23 7.96 -2.39 -0.02 -0.25 16 39 H 0.39 -1.16 8.70 -74.06 -0.64 -1.81 16 40 H -0.28 0.29 7.11 99.48 0.71 1.00 16 41 H -0.31 -1.49 7.11 99.48 0.71 -0.78 16 42 H 0.15 -1.40 4.87 -2.91 -0.01 -1.41 16 43 H 0.17 -1.93 6.30 -2.91 -0.02 -1.95 16 44 H 0.09 -0.87 8.14 -2.38 -0.02 -0.89 16 45 H 0.13 -2.18 8.07 -2.39 -0.02 -2.20 16 Total: 0.00 -44.95 390.03 -3.60 -48.54 By element: Atomic # 1 Polarization: -31.23 SS G_CDS: -0.38 Total: -31.61 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: 4.37 Total: 22.66 kcal Atomic # 7 Polarization: 4.37 SS G_CDS: -2.36 Total: 2.01 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -6.96 Total: -31.40 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: 2.04 Total: -0.86 kcal Atomic # 16 Polarization: -9.04 SS G_CDS: -0.30 Total: -9.34 kcal Total: -44.95 -3.60 -48.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_2989410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.110 kcal (2) G-P(sol) polarization free energy of solvation -44.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds