Wall clock time and date at job start Sun Mar 7 2021 06:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42101 * 108.57944 * 2 1 4 4 O 1.42105 * 108.57941 * 228.97253 * 2 1 3 5 5 C 1.81404 * 101.92094 * 114.48963 * 2 1 3 6 6 C 1.52998 * 109.47101 * 180.02562 * 5 2 1 7 7 H 1.08997 * 112.85474 * 43.80081 * 6 5 2 8 8 C 1.53781 * 113.61406 * 174.99847 * 6 5 2 9 9 C 1.53786 * 87.17350 * 140.02181 * 8 6 5 10 10 H 1.08993 * 113.61491 * 89.15923 * 9 8 6 11 11 N 1.46501 * 113.61366 * 220.06429 * 9 8 6 12 12 C 1.34773 * 120.00122 * 204.99908 * 11 9 8 13 13 O 1.21617 * 119.99840 * 359.97438 * 12 11 9 14 14 C 1.47379 * 120.00251 * 179.97438 * 12 11 9 15 15 C 1.36414 * 127.19042 * 180.02562 * 14 12 11 16 16 C 1.50698 * 125.80401 * 359.96496 * 15 14 12 17 17 O 1.42897 * 109.47099 * 89.99857 * 16 15 14 18 18 C 1.35904 * 117.00021 * 180.02562 * 17 16 15 19 19 C 1.38735 * 120.05568 * 359.72641 * 18 17 16 20 20 C 1.38143 * 119.94251 * 179.74631 * 19 18 17 21 21 C 1.38262 * 120.05742 * 0.50658 * 20 19 18 22 22 C 1.50699 * 119.94563 * 179.74575 * 21 20 19 23 23 O 1.42898 * 109.47360 * 245.02505 * 22 21 20 24 24 Si 1.86301 * 109.47098 * 5.02421 * 22 21 20 25 25 C 1.38268 * 120.11083 * 359.76847 * 21 20 19 26 26 C 1.38140 * 120.05490 * 359.97438 * 25 21 20 27 27 O 1.33654 * 108.39472 * 179.97438 * 15 14 12 28 28 C 1.34212 * 110.90926 * 0.02562 * 27 15 14 29 29 C 1.34174 * 109.12552 * 359.74626 * 28 27 15 30 30 C 1.53782 * 113.68747 * 272.53379 * 6 5 2 31 31 H 1.09002 * 109.46512 * 305.51492 * 1 2 3 32 32 H 1.08995 * 109.46894 * 65.50922 * 1 2 3 33 33 H 1.08996 * 109.47205 * 185.51103 * 1 2 3 34 34 H 1.08995 * 109.47167 * 59.99357 * 5 2 1 35 35 H 1.09003 * 109.46810 * 299.99838 * 5 2 1 36 36 H 1.09002 * 113.61445 * 254.61180 * 8 6 5 37 37 H 1.09002 * 113.61408 * 25.42911 * 8 6 5 38 38 H 0.97002 * 119.99797 * 24.99368 * 11 9 8 39 39 H 1.08996 * 109.47209 * 210.00248 * 16 15 14 40 40 H 1.08997 * 109.47149 * 330.00026 * 16 15 14 41 41 H 1.08004 * 120.02553 * 359.97438 * 19 18 17 42 42 H 1.08005 * 119.96871 * 180.23447 * 20 19 18 43 43 H 1.09002 * 109.47139 * 125.02052 * 22 21 20 44 44 H 0.96701 * 114.00145 * 59.99884 * 23 22 21 45 45 H 1.48506 * 110.00136 * 179.97438 * 24 22 21 46 46 H 1.48501 * 110.00075 * 301.31548 * 24 22 21 47 47 H 1.07994 * 119.96992 * 179.97438 * 25 21 20 48 48 H 1.08004 * 120.02695 * 179.97438 * 26 25 21 49 49 H 1.08001 * 125.43688 * 180.02562 * 28 27 15 50 50 H 1.07999 * 127.03031 * 180.27010 * 29 28 27 51 51 H 1.08997 * 113.61668 * 334.55355 * 30 6 5 52 52 H 1.08998 * 113.61674 * 105.37864 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0162 5 6 2.1888 -0.7358 1.6152 6 6 3.7055 -0.8185 1.7984 7 1 4.2201 0.0892 1.4834 8 6 4.1317 -1.3170 3.1894 9 6 5.2306 -2.1251 2.4792 10 1 6.1628 -1.5752 2.3507 11 7 5.4306 -3.4634 3.0407 12 6 6.6200 -4.0818 2.9014 13 8 7.5270 -3.5290 2.3091 14 6 6.8214 -5.4278 3.4667 15 6 7.9559 -6.1835 3.4130 16 6 9.2504 -5.7845 2.7526 17 8 10.0800 -5.1092 3.7000 18 6 11.2928 -4.6795 3.2623 19 6 11.6787 -4.9082 1.9495 20 6 12.9097 -4.4657 1.5056 21 6 13.7614 -3.8047 2.3713 22 6 15.1061 -3.3282 1.8859 23 8 16.1392 -4.0343 2.5758 24 14 15.2534 -3.6441 0.0558 25 6 13.3815 -3.5805 3.6817 26 6 12.1493 -4.0163 4.1290 27 8 7.7241 -7.3379 4.0454 28 6 6.4697 -7.3801 4.5209 29 6 5.8433 -6.2347 4.2109 30 6 4.3267 -2.1066 1.2330 31 1 -0.3632 0.5970 0.8365 32 1 -0.3633 0.4260 -0.9352 33 1 -0.3633 -1.0229 0.0987 34 1 1.7610 -1.7369 1.6665 35 1 1.7610 -0.1171 2.4042 36 1 4.5179 -0.5292 3.8361 37 1 3.3813 -1.9373 3.6797 38 1 4.7070 -3.9044 3.5128 39 1 9.7633 -6.6755 2.3906 40 1 9.0410 -5.1200 1.9144 41 1 11.0156 -5.4285 1.2741 42 1 13.2090 -4.6402 0.4826 43 1 15.2045 -2.2600 2.0792 44 1 16.1132 -4.9926 2.4487 45 1 16.5751 -3.1780 -0.4354 46 1 15.0893 -5.0932 -0.2243 47 1 14.0486 -3.0643 4.3560 48 1 11.8532 -3.8413 5.1528 49 1 6.0354 -8.2026 5.0697 50 1 4.8276 -5.9618 4.4565 51 1 3.6304 -2.9439 1.1878 52 1 4.8693 -1.9565 0.2996 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_4549634.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:04:27 Heat of formation + Delta-G solvation = -98.830652 kcal Electronic energy + Delta-G solvation = -37456.401301 eV Core-core repulsion = 32290.366930 eV Total energy + Delta-G solvation = -5166.034371 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.137 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -43.72075 -41.32603 -41.13025 -39.50063 -39.22908 -37.95600 -37.32285 -36.98387 -35.05359 -33.95154 -32.85619 -32.00634 -31.41780 -31.02937 -30.10189 -27.95564 -26.73760 -26.24364 -25.35213 -23.86793 -23.42796 -22.42020 -21.93289 -21.42104 -20.46545 -19.77845 -19.53378 -19.11977 -18.37789 -17.86315 -17.49819 -17.37181 -17.23381 -17.01332 -16.96830 -16.83595 -16.57490 -16.37718 -16.14791 -16.06991 -15.82994 -15.73793 -15.47819 -14.80454 -14.65638 -14.57776 -14.40798 -14.21541 -14.05418 -13.90544 -13.89439 -13.64370 -13.57326 -13.47547 -13.44183 -13.24450 -13.11102 -13.02724 -12.98447 -12.61314 -12.34549 -12.16502 -12.09873 -12.00901 -11.92978 -11.63706 -11.48681 -11.16735 -11.00641 -10.96437 -10.59977 -10.12812 -10.07494 -9.82385 -9.27725 -4.92160 -0.89177 -0.04464 0.24252 0.27287 1.03802 1.31102 1.51259 1.57740 1.92984 1.93276 2.04856 2.13762 2.45840 2.61342 2.78518 3.12959 3.33917 3.37435 3.43451 3.44867 3.58612 3.64889 3.67297 3.71219 3.76028 3.79230 3.88489 3.92238 4.06743 4.10417 4.11099 4.18666 4.26868 4.34291 4.40031 4.45471 4.53092 4.53507 4.61781 4.67177 4.72787 4.77276 4.80441 4.83639 4.93363 4.96397 4.99866 5.04393 5.12015 5.19288 5.23062 5.27871 5.45017 5.52332 5.66374 5.88856 6.23253 6.46668 6.49093 7.12479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.404 3.596 3 O -0.995 6.995 4 O -0.988 6.988 5 C -0.579 4.579 6 C -0.111 4.111 7 H 0.096 0.904 8 C -0.112 4.112 9 C 0.112 3.888 10 H 0.094 0.906 11 N -0.694 5.694 12 C 0.582 3.418 13 O -0.573 6.573 14 C -0.223 4.223 15 C 0.038 3.962 16 C 0.134 3.866 17 O -0.322 6.322 18 C 0.124 3.876 19 C -0.206 4.206 20 C -0.078 4.078 21 C -0.157 4.157 22 C -0.076 4.076 23 O -0.548 6.548 24 Si 0.761 3.239 25 C -0.057 4.057 26 C -0.162 4.162 27 O -0.179 6.179 28 C -0.013 4.013 29 C -0.194 4.194 30 C -0.156 4.156 31 H 0.154 0.846 32 H 0.126 0.874 33 H 0.155 0.845 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.418 0.582 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.124 0.876 44 H 0.385 0.615 45 H -0.301 1.301 46 H -0.280 1.280 47 H 0.141 0.859 48 H 0.134 0.866 49 H 0.252 0.748 50 H 0.196 0.804 51 H 0.110 0.890 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.609 -3.769 4.521 13.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.593 3.407 3 O -0.992 6.992 4 O -0.985 6.985 5 C -0.710 4.710 6 C -0.131 4.131 7 H 0.114 0.886 8 C -0.151 4.151 9 C 0.007 3.993 10 H 0.113 0.887 11 N -0.345 5.345 12 C 0.370 3.630 13 O -0.454 6.454 14 C -0.228 4.228 15 C -0.015 4.015 16 C 0.060 3.940 17 O -0.236 6.236 18 C 0.080 3.920 19 C -0.225 4.225 20 C -0.095 4.095 21 C -0.158 4.158 22 C -0.185 4.185 23 O -0.357 6.357 24 Si 0.666 3.334 25 C -0.075 4.075 26 C -0.181 4.181 27 O -0.075 6.075 28 C -0.079 4.079 29 C -0.213 4.213 30 C -0.195 4.195 31 H 0.172 0.828 32 H 0.145 0.855 33 H 0.173 0.827 34 H 0.187 0.813 35 H 0.189 0.811 36 H 0.105 0.895 37 H 0.141 0.859 38 H 0.256 0.744 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.164 0.836 42 H 0.165 0.835 43 H 0.142 0.858 44 H 0.235 0.765 45 H -0.229 1.229 46 H -0.206 1.206 47 H 0.159 0.841 48 H 0.152 0.848 49 H 0.268 0.732 50 H 0.213 0.787 51 H 0.129 0.871 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.704 -3.078 3.194 10.670 hybrid contribution -0.348 -1.169 1.091 1.636 sum -10.052 -4.247 4.284 11.723 Atomic orbital electron populations 1.30134 1.22464 1.13883 1.13028 1.07891 0.79803 0.74422 0.78592 1.93552 1.80991 1.37102 1.87596 1.93557 1.80758 1.67394 1.56784 1.30131 1.03227 1.16416 1.21236 1.22079 0.92410 0.98779 0.99802 0.88569 1.23350 0.97029 0.99545 0.95194 1.22570 0.98642 0.83061 0.95026 0.88743 1.45589 1.13631 1.17922 1.57344 1.17519 0.82789 0.84240 0.78447 1.90782 1.43210 1.67133 1.44262 1.21402 0.96303 0.96683 1.08366 1.22040 0.95928 0.85312 0.98193 1.21135 0.84941 0.97868 0.90033 1.86045 1.26194 1.71725 1.39662 1.19191 0.84465 0.94827 0.93563 1.21405 0.99417 1.06684 0.94966 1.21046 0.93044 0.95732 0.99715 1.20271 0.97575 1.02977 0.94969 1.25134 0.84307 1.00291 1.08798 1.86565 1.51803 1.24641 1.72647 0.94040 0.83284 0.81420 0.74650 1.20963 0.94339 0.96696 0.95456 1.20633 0.94364 1.02643 1.00420 1.83792 1.32848 1.35189 1.55623 1.24929 0.80644 1.01915 1.00405 1.23265 1.01804 0.93787 1.02416 1.23780 0.99458 0.98352 0.97894 0.82814 0.85510 0.82702 0.81334 0.81114 0.89514 0.85912 0.74407 0.88377 0.87475 0.83619 0.83524 0.85805 0.76537 1.22933 1.20631 0.84116 0.84798 0.73205 0.78736 0.87150 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.46 10.62 113.37 1.20 8.67 16 2 S 2.40 -8.43 5.35 -56.49 -0.30 -8.73 16 3 O -1.00 -6.61 18.10 -127.37 -2.31 -8.92 16 4 O -0.99 -5.89 18.10 -127.37 -2.31 -8.20 16 5 C -0.58 6.85 5.64 71.98 0.41 7.26 16 6 C -0.11 0.59 3.65 -10.27 -0.04 0.56 16 7 H 0.10 -0.23 8.13 -2.39 -0.02 -0.25 16 8 C -0.11 0.92 7.39 31.12 0.23 1.15 16 9 C 0.11 -0.15 4.25 45.58 0.19 0.04 16 10 H 0.09 0.41 7.46 -2.39 -0.02 0.39 16 11 N -0.69 1.38 5.35 -443.05 -2.37 -0.99 16 12 C 0.58 3.38 7.81 86.65 0.68 4.06 16 13 O -0.57 -7.79 14.45 -4.08 -0.06 -7.85 16 14 C -0.22 -0.72 6.31 -18.99 -0.12 -0.84 16 15 C 0.04 0.20 7.00 25.26 0.18 0.38 16 16 C 0.13 0.74 4.74 71.24 0.34 1.08 16 17 O -0.32 -3.15 10.12 -92.47 -0.94 -4.09 16 18 C 0.12 1.01 6.69 22.51 0.15 1.16 16 19 C -0.21 -0.95 9.04 22.37 0.20 -0.75 16 20 C -0.08 -0.21 8.66 22.25 0.19 -0.01 16 21 C -0.16 -0.53 5.35 -19.85 -0.11 -0.64 16 22 C -0.08 -0.13 2.80 71.24 0.20 0.06 16 23 O -0.55 -2.46 12.83 -148.98 -1.91 -4.38 16 24 Si 0.76 0.14 29.88 68.60 2.05 2.19 16 25 C -0.06 -0.27 9.68 22.25 0.22 -0.06 16 26 C -0.16 -1.14 9.99 22.36 0.22 -0.91 16 27 O -0.18 -0.44 10.52 4.48 0.05 -0.40 16 28 C -0.01 0.07 12.03 66.89 0.80 0.87 16 29 C -0.19 0.94 10.60 23.65 0.25 1.20 16 30 C -0.16 0.29 7.44 31.18 0.23 0.52 16 31 H 0.15 -2.50 8.14 -2.39 -0.02 -2.52 16 32 H 0.13 -1.24 8.14 -2.39 -0.02 -1.26 16 33 H 0.15 -2.56 8.14 -2.39 -0.02 -2.58 16 34 H 0.17 -3.09 7.85 -2.39 -0.02 -3.11 16 35 H 0.17 -3.08 8.14 -2.39 -0.02 -3.10 16 36 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 37 H 0.12 -1.73 8.08 -2.39 -0.02 -1.75 16 38 H 0.42 -3.88 7.90 -92.71 -0.73 -4.61 16 39 H 0.10 0.10 7.65 -2.39 -0.02 0.08 16 40 H 0.11 0.73 6.02 -2.39 -0.01 0.71 16 41 H 0.15 0.12 6.30 -2.91 -0.02 0.10 16 42 H 0.15 -0.24 4.83 -2.91 -0.01 -0.25 16 43 H 0.12 0.03 7.96 -2.39 -0.02 0.01 16 44 H 0.39 -0.40 8.70 -74.06 -0.64 -1.05 16 45 H -0.30 -2.29 7.11 99.48 0.71 -1.58 16 46 H -0.28 -0.92 7.01 99.48 0.70 -0.23 16 47 H 0.14 0.35 8.06 -2.91 -0.02 0.33 16 48 H 0.13 0.75 8.06 -2.91 -0.02 0.73 16 49 H 0.25 -3.57 8.06 -2.91 -0.02 -3.59 16 50 H 0.20 -2.51 7.74 -2.91 -0.02 -2.54 16 51 H 0.11 -0.63 7.90 -2.39 -0.02 -0.65 16 52 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 Total: 0.00 -41.77 448.05 -3.02 -44.79 By element: Atomic # 1 Polarization: -26.87 SS G_CDS: -0.36 Total: -27.24 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: 5.43 Total: 23.80 kcal Atomic # 7 Polarization: 1.38 SS G_CDS: -2.37 Total: -0.99 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -7.47 Total: -33.82 kcal Atomic # 14 Polarization: 0.14 SS G_CDS: 2.05 Total: 2.19 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -0.30 Total: -8.73 kcal Total: -41.77 -3.02 -44.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_4549634.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.041 kcal (2) G-P(sol) polarization free energy of solvation -41.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds