Wall clock time and date at job start Sun Mar 7 2021 06:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35994 * 116.99818 * 2 1 4 4 C 1.39156 * 120.06957 * 179.97438 * 3 2 1 5 5 O 1.35997 * 120.07458 * 359.97438 * 4 3 2 6 6 C 1.42898 * 116.99871 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47223 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99829 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00412 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00055 * 179.97438 * 9 7 6 11 11 H 1.08994 * 112.85149 * 23.80286 * 10 9 7 12 12 C 1.53783 * 113.61016 * 155.00036 * 10 9 7 13 13 C 1.53788 * 87.07774 * 139.98172 * 12 10 9 14 14 H 1.08994 * 113.61473 * 89.20077 * 13 12 10 15 15 C 1.53000 * 113.61266 * 220.01606 * 13 12 10 16 16 S 1.81395 * 109.47276 * 184.99840 * 15 13 12 17 17 C 1.81399 * 101.92287 * 180.02562 * 16 15 13 18 18 O 1.42106 * 108.57933 * 294.49192 * 16 15 13 19 19 O 1.42107 * 108.57800 * 65.51442 * 16 15 13 20 20 C 1.53780 * 113.61198 * 252.49801 * 10 9 7 21 21 C 1.38566 * 119.85271 * 180.02562 * 4 3 2 22 22 C 1.38245 * 119.99674 * 359.73518 * 21 4 3 23 23 N 1.48011 * 119.92846 * 180.25700 * 22 21 4 24 24 O 1.21807 * 119.99561 * 0.26075 * 23 22 21 25 25 O 1.21797 * 120.00083 * 180.25898 * 23 22 21 26 26 C 1.38251 * 120.15011 * 0.52112 * 22 21 4 27 27 C 1.50699 * 119.93020 * 179.75979 * 26 22 21 28 28 O 1.42907 * 109.46603 * 74.72513 * 27 26 22 29 29 Si 1.86298 * 109.47032 * 194.71816 * 27 26 22 30 30 C 1.38246 * 120.14292 * 359.48138 * 26 22 21 31 31 H 1.08988 * 109.47628 * 300.00475 * 1 2 3 32 32 H 1.09004 * 109.46975 * 60.00719 * 1 2 3 33 33 H 1.09004 * 109.46663 * 180.02562 * 1 2 3 34 34 H 1.09009 * 109.47052 * 299.99662 * 6 5 4 35 35 H 1.09004 * 109.47581 * 59.99747 * 6 5 4 36 36 H 0.96998 * 119.99596 * 0.02562 * 9 7 6 37 37 H 1.08999 * 113.61127 * 254.52618 * 12 10 9 38 38 H 1.08999 * 113.61515 * 25.34844 * 12 10 9 39 39 H 1.08995 * 109.47147 * 305.00430 * 15 13 12 40 40 H 1.09010 * 109.46979 * 65.00141 * 15 13 12 41 41 H 1.09002 * 109.47190 * 60.00515 * 17 16 15 42 42 H 1.08998 * 109.46852 * 180.02562 * 17 16 15 43 43 H 1.08997 * 109.47192 * 300.00051 * 17 16 15 44 44 H 1.08997 * 113.61854 * 334.56786 * 20 10 9 45 45 H 1.08998 * 113.61535 * 105.47207 * 20 10 9 46 46 H 1.07996 * 119.99831 * 180.02562 * 21 4 3 47 47 H 1.08996 * 109.47117 * 314.72426 * 27 26 22 48 48 H 0.96697 * 114.00527 * 59.99993 * 28 27 26 49 49 H 1.48506 * 109.99834 * 58.68765 * 29 27 26 50 50 H 1.48502 * 110.00011 * 180.02562 * 29 27 26 51 51 H 1.08003 * 120.00000 * 180.28127 * 30 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2863 0.0005 5 8 4.1795 0.1476 0.0016 6 6 5.6003 0.3006 0.0027 7 6 6.2519 -1.0581 0.0031 8 8 5.5670 -2.0590 0.0030 9 7 7.5957 -1.1612 0.0036 10 6 8.2291 -2.4822 0.0046 11 1 7.5836 -3.2614 -0.4005 12 6 9.6471 -2.4858 -0.5905 13 6 10.0318 -3.4610 0.5348 14 1 9.8810 -4.5087 0.2751 15 6 11.4132 -3.1905 1.1345 16 16 11.8133 -4.4857 2.3398 17 6 13.4568 -3.9720 2.9103 18 8 10.9053 -4.3872 3.4285 19 8 11.9387 -5.7222 1.6507 20 6 8.8771 -2.8536 1.3488 21 6 4.0603 2.5233 0.0011 22 6 3.3029 3.6798 -0.0045 23 7 3.9714 5.0003 -0.0096 24 8 5.1876 5.0672 -0.0138 25 8 3.3054 6.0201 -0.0097 26 6 1.9224 3.6058 0.0003 27 6 1.1016 4.8696 -0.0003 28 8 1.1356 5.4589 -1.3017 29 14 -0.6599 4.4663 0.4529 30 6 1.2932 2.3748 -0.0001 31 1 -0.3634 0.5138 0.8898 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 5.9072 0.8501 -0.8874 35 1 5.9059 0.8508 0.8926 36 1 8.1435 -0.3607 0.0040 37 1 9.7015 -2.9252 -1.5865 38 1 10.1505 -1.5212 -0.5253 39 1 12.1601 -3.1896 0.3407 40 1 11.4099 -2.2203 1.6314 41 1 13.3930 -2.9789 3.3551 42 1 13.8212 -4.6808 3.6538 43 1 14.1439 -3.9479 2.0645 44 1 9.1705 -1.9900 1.9455 45 1 8.3099 -3.5898 1.9183 46 1 5.1385 2.5839 0.0011 47 1 1.5126 5.5701 0.7267 48 1 0.7842 4.8902 -2.0004 49 1 -0.7056 3.8238 1.7910 50 1 -1.4799 5.7044 0.4553 51 1 0.2145 2.3196 -0.0010 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_4549636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:04:34 Heat of formation + Delta-G solvation = -142.753026 kcal Electronic energy + Delta-G solvation = -39752.359745 eV Core-core repulsion = 34138.082743 eV Total energy + Delta-G solvation = -5614.277002 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 431.131 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -43.40247 -42.12463 -41.33152 -40.14870 -39.33324 -39.07116 -37.97461 -37.73347 -37.12994 -37.00229 -35.01991 -32.68326 -32.56884 -31.30898 -30.30178 -29.48144 -28.71704 -27.91354 -26.75614 -25.87258 -24.42947 -23.58185 -23.13305 -21.81279 -20.82002 -20.77027 -19.85456 -19.79290 -19.51025 -18.73195 -18.66471 -18.40929 -17.83384 -17.74547 -17.67414 -17.43109 -17.21653 -17.00528 -16.85334 -16.58276 -16.38373 -16.15035 -16.08238 -15.64836 -15.63406 -15.12592 -14.81004 -14.63006 -14.39444 -14.05714 -13.94164 -13.90864 -13.88976 -13.62977 -13.49050 -13.45079 -13.24229 -13.07757 -13.01626 -13.00372 -12.67789 -12.66578 -12.49101 -12.43298 -12.33350 -12.27124 -12.21803 -12.03765 -11.95031 -11.78495 -11.50976 -11.14833 -10.98245 -10.53965 -10.46163 -10.17356 -9.49479 -5.13879 -1.36540 -0.90834 -0.43809 0.16204 0.30170 1.12573 1.24895 1.36490 1.57015 1.89055 1.89887 1.91382 1.93355 2.34689 2.76761 2.97715 3.11056 3.17369 3.26879 3.35344 3.42094 3.45863 3.51644 3.55830 3.65912 3.71978 3.87359 3.93548 3.96173 4.05274 4.06071 4.09363 4.10912 4.17316 4.22348 4.33046 4.38563 4.40847 4.53147 4.54680 4.71975 4.72774 4.73807 4.81134 4.81436 4.94203 4.98334 5.03577 5.14712 5.25019 5.46985 5.59506 6.05946 6.39856 6.46944 6.71291 7.08192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.308 6.308 3 C 0.170 3.830 4 C 0.100 3.900 5 O -0.292 6.292 6 C 0.026 3.974 7 C 0.514 3.486 8 O -0.569 6.569 9 N -0.696 5.696 10 C 0.113 3.887 11 H 0.093 0.907 12 C -0.110 4.110 13 C -0.113 4.113 14 H 0.095 0.905 15 C -0.578 4.578 16 S 2.402 3.598 17 C -0.643 4.643 18 O -0.989 6.989 19 O -0.996 6.996 20 C -0.159 4.159 21 C -0.109 4.109 22 C -0.046 4.046 23 N 0.036 4.964 24 O -0.184 6.184 25 O -0.167 6.167 26 C -0.040 4.040 27 C -0.091 4.091 28 O -0.536 6.536 29 Si 0.786 3.214 30 C -0.163 4.163 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.424 0.576 37 H 0.088 0.912 38 H 0.126 0.874 39 H 0.172 0.828 40 H 0.169 0.831 41 H 0.154 0.846 42 H 0.126 0.874 43 H 0.154 0.846 44 H 0.113 0.887 45 H 0.055 0.945 46 H 0.184 0.816 47 H 0.115 0.885 48 H 0.393 0.607 49 H -0.272 1.272 50 H -0.290 1.290 51 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.326 1.334 -3.322 4.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.220 6.220 3 C 0.121 3.879 4 C 0.053 3.947 5 O -0.204 6.204 6 C -0.051 4.051 7 C 0.300 3.700 8 O -0.447 6.447 9 N -0.350 5.350 10 C 0.008 3.992 11 H 0.111 0.889 12 C -0.149 4.149 13 C -0.133 4.133 14 H 0.113 0.887 15 C -0.709 4.709 16 S 2.592 3.408 17 C -0.795 4.795 18 O -0.986 6.986 19 O -0.993 6.993 20 C -0.198 4.198 21 C -0.129 4.129 22 C -0.130 4.130 23 N 0.549 4.451 24 O -0.395 6.395 25 O -0.380 6.380 26 C -0.042 4.042 27 C -0.198 4.198 28 O -0.343 6.343 29 Si 0.688 3.312 30 C -0.181 4.181 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.139 0.861 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.263 0.737 37 H 0.106 0.894 38 H 0.144 0.856 39 H 0.189 0.811 40 H 0.187 0.813 41 H 0.173 0.827 42 H 0.144 0.856 43 H 0.172 0.828 44 H 0.131 0.869 45 H 0.074 0.926 46 H 0.202 0.798 47 H 0.132 0.868 48 H 0.242 0.758 49 H -0.198 1.198 50 H -0.217 1.217 51 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 0.670 -0.565 -2.155 2.327 hybrid contribution 1.511 1.497 0.278 2.145 sum 2.181 0.932 -1.877 3.025 Atomic orbital electron populations 1.23811 0.74694 1.07058 1.04196 1.86336 1.24865 1.24561 1.86198 1.18693 0.89204 0.86380 0.93596 1.17976 0.88824 0.85138 1.02790 1.86309 1.18547 1.26851 1.88721 1.22938 0.78774 0.96027 1.07366 1.20418 0.83358 0.90421 0.75764 1.90787 1.64056 1.39948 1.49902 1.45639 1.05009 1.10100 1.74277 1.22526 0.93891 0.85279 0.97499 0.88852 1.23354 0.92399 1.00982 0.98157 1.22101 0.91528 1.00942 0.98721 0.88685 1.30128 1.05590 1.18526 1.16705 1.07917 0.78690 0.77525 0.76680 1.30135 1.20968 1.14248 1.14182 1.93557 1.63193 1.87721 1.54129 1.93553 1.87387 1.42886 1.75452 1.23779 0.96827 1.02056 0.97119 1.20902 1.03033 0.88077 1.00863 1.20557 0.92747 0.81947 1.17773 1.43711 1.00824 1.03420 0.97164 1.94497 0.96498 1.94111 1.54441 1.94581 1.64424 1.25384 1.53630 1.20224 0.91107 0.97635 0.95283 1.25749 1.10546 0.92753 0.90802 1.86669 1.87120 1.44580 1.15910 0.94392 0.71843 0.82159 0.82833 1.21080 1.01759 0.88103 1.07202 0.90209 0.88767 0.86130 0.85132 0.85443 0.73725 0.89355 0.85620 0.81058 0.81267 0.82722 0.85572 0.82796 0.86875 0.92588 0.79842 0.86798 0.75805 1.19845 1.21717 0.79005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 9.81 113.37 1.11 1.15 16 2 O -0.31 0.02 10.28 -79.62 -0.82 -0.80 16 3 C 0.17 -0.18 6.70 22.57 0.15 -0.03 16 4 C 0.10 0.04 6.70 22.57 0.15 0.19 16 5 O -0.29 -0.94 9.45 -67.10 -0.63 -1.57 16 6 C 0.03 -0.13 5.22 71.23 0.37 0.24 16 7 C 0.51 0.59 7.91 87.65 0.69 1.29 16 8 O -0.57 -7.51 16.10 16.01 0.26 -7.26 16 9 N -0.70 4.34 5.35 -440.04 -2.36 1.99 16 10 C 0.11 -0.38 4.24 45.52 0.19 -0.19 16 11 H 0.09 0.25 7.46 -2.39 -0.02 0.23 16 12 C -0.11 1.10 7.39 31.12 0.23 1.33 16 13 C -0.11 0.70 3.66 -10.26 -0.04 0.66 16 14 H 0.09 -0.28 8.13 -2.39 -0.02 -0.30 16 15 C -0.58 7.10 5.64 71.98 0.41 7.51 16 16 S 2.40 -8.49 5.35 -56.49 -0.30 -8.79 16 17 C -0.64 7.38 10.62 113.37 1.20 8.58 16 18 O -0.99 -6.01 18.10 -127.37 -2.31 -8.31 16 19 O -1.00 -6.59 18.10 -127.37 -2.31 -8.90 16 20 C -0.16 0.46 7.43 31.12 0.23 0.69 16 21 C -0.11 0.12 8.54 22.35 0.19 0.31 16 22 C -0.05 -0.13 6.85 36.38 0.25 0.11 16 23 N 0.04 0.32 4.45 -46.45 -0.21 0.11 16 24 O -0.18 -1.81 18.44 18.88 0.35 -1.46 16 25 O -0.17 -2.07 14.61 25.14 0.37 -1.71 16 26 C -0.04 0.03 5.26 -19.86 -0.10 -0.07 16 27 C -0.09 0.01 1.74 71.24 0.12 0.13 16 28 O -0.54 -0.50 11.77 -129.51 -1.52 -2.02 16 29 Si 0.79 -4.18 29.91 68.60 2.05 -2.13 16 30 C -0.16 0.86 7.65 22.35 0.17 1.03 16 31 H 0.08 -1.02 7.66 -2.39 -0.02 -1.03 16 32 H 0.09 -1.41 7.66 -2.38 -0.02 -1.43 16 33 H 0.12 -1.34 8.14 -2.38 -0.02 -1.36 16 34 H 0.13 -1.48 7.66 -2.38 -0.02 -1.50 16 35 H 0.13 -1.38 7.66 -2.39 -0.02 -1.40 16 36 H 0.42 -6.22 8.73 -92.71 -0.81 -7.03 16 37 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 38 H 0.13 -2.02 8.08 -2.39 -0.02 -2.04 16 39 H 0.17 -3.17 8.14 -2.39 -0.02 -3.19 16 40 H 0.17 -3.18 7.84 -2.39 -0.02 -3.20 16 41 H 0.15 -2.53 8.14 -2.39 -0.02 -2.55 16 42 H 0.13 -1.21 8.14 -2.39 -0.02 -1.23 16 43 H 0.15 -2.49 8.14 -2.39 -0.02 -2.50 16 44 H 0.11 -0.80 7.90 -2.39 -0.02 -0.82 16 45 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 46 H 0.18 -1.09 5.85 -2.91 -0.02 -1.11 16 47 H 0.11 0.53 6.09 -2.39 -0.01 0.52 16 48 H 0.39 -3.55 8.70 -74.06 -0.64 -4.19 16 49 H -0.27 0.50 7.11 99.48 0.71 1.21 16 50 H -0.29 -0.78 7.11 99.48 0.71 -0.08 16 51 H 0.19 -2.40 3.36 -2.91 -0.01 -2.41 16 Total: 0.00 -51.55 441.27 -2.48 -54.03 By element: Atomic # 1 Polarization: -35.75 SS G_CDS: -0.38 Total: -36.13 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: 5.34 Total: 22.94 kcal Atomic # 7 Polarization: 4.66 SS G_CDS: -2.56 Total: 2.10 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -6.62 Total: -32.02 kcal Atomic # 14 Polarization: -4.18 SS G_CDS: 2.05 Total: -2.13 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -0.30 Total: -8.79 kcal Total: -51.55 -2.48 -54.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_4549636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.724 kcal (2) G-P(sol) polarization free energy of solvation -51.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds