Wall clock time and date at job start Sun Mar 7 2021 06:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 117.00232 * 2 1 4 4 C 1.39149 * 120.07593 * 179.97438 * 3 2 1 5 5 O 1.35993 * 120.07229 * 0.02562 * 4 3 2 6 6 C 1.42898 * 117.00170 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47374 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99945 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99921 * 179.97438 * 7 6 5 10 10 C 1.46507 * 119.99784 * 180.02562 * 9 7 6 11 11 H 1.09001 * 112.84492 * 23.80619 * 10 9 7 12 12 C 1.53773 * 113.61306 * 155.00091 * 10 9 7 13 13 C 1.53777 * 87.07888 * 139.98095 * 12 10 9 14 14 H 1.09004 * 113.61576 * 89.12349 * 13 12 10 15 15 C 1.53008 * 113.61593 * 220.01621 * 13 12 10 16 16 S 1.81404 * 109.47112 * 185.00191 * 15 13 12 17 17 C 1.81395 * 101.91888 * 180.02562 * 16 15 13 18 18 O 1.42095 * 108.57920 * 294.49154 * 16 15 13 19 19 O 1.42096 * 108.57792 * 65.51570 * 16 15 13 20 20 C 1.53772 * 87.08364 * 334.56624 * 13 12 10 21 21 C 1.38569 * 119.85403 * 179.97438 * 4 3 2 22 22 C 1.38244 * 119.99968 * 0.02562 * 21 4 3 23 23 C 1.38249 * 120.14509 * 0.02562 * 22 21 4 24 24 C 1.50693 * 119.92305 * 179.97438 * 23 22 21 25 25 O 1.42907 * 109.47661 * 119.99735 * 24 23 22 26 26 Si 1.86298 * 109.47618 * 359.97438 * 24 23 22 27 27 C 1.38241 * 120.14940 * 0.26331 * 23 22 21 28 28 H 1.09000 * 109.47288 * 300.00066 * 1 2 3 29 29 H 1.09006 * 109.46914 * 59.99713 * 1 2 3 30 30 H 1.08998 * 109.47385 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47161 * 299.99908 * 6 5 4 32 32 H 1.09005 * 109.47341 * 59.99342 * 6 5 4 33 33 H 0.96996 * 120.00585 * 0.02562 * 9 7 6 34 34 H 1.08997 * 113.61722 * 254.53404 * 12 10 9 35 35 H 1.09007 * 113.61714 * 25.43729 * 12 10 9 36 36 H 1.08996 * 109.46934 * 305.00549 * 15 13 12 37 37 H 1.08997 * 109.46731 * 65.00347 * 15 13 12 38 38 H 1.08992 * 109.47501 * 59.99806 * 17 16 15 39 39 H 1.09006 * 109.46983 * 180.02562 * 17 16 15 40 40 H 1.09001 * 109.47258 * 299.99753 * 17 16 15 41 41 H 1.08999 * 113.61627 * 270.88034 * 20 13 12 42 42 H 1.09007 * 113.61293 * 139.97617 * 20 13 12 43 43 H 1.08007 * 119.99919 * 179.97438 * 21 4 3 44 44 H 1.07997 * 119.92242 * 179.97438 * 22 21 4 45 45 H 1.09000 * 109.46936 * 239.99359 * 24 23 22 46 46 H 0.96697 * 114.00527 * 179.97438 * 25 24 23 47 47 H 1.48506 * 109.99834 * 298.68714 * 26 24 23 48 48 H 1.48502 * 110.00011 * 59.99978 * 26 24 23 49 49 H 1.08000 * 120.00051 * 179.70694 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2863 0.0005 5 8 4.1795 0.1477 0.0005 6 6 5.6003 0.3006 0.0005 7 6 6.2519 -1.0583 0.0012 8 8 5.5670 -2.0592 0.0011 9 7 7.5957 -1.1612 0.0008 10 6 8.2291 -2.4823 0.0008 11 1 7.5833 -3.2613 -0.4043 12 6 9.6467 -2.4857 -0.5951 13 6 10.0320 -3.4612 0.5295 14 1 9.8797 -4.5089 0.2700 15 6 11.4138 -3.1911 1.1285 16 16 11.8146 -4.4870 2.3330 17 6 13.4584 -3.9735 2.9027 18 8 10.9074 -4.3889 3.4222 19 8 11.9396 -5.7230 1.6434 20 6 8.8779 -2.8543 1.3445 21 6 4.0603 2.5234 0.0000 22 6 3.3029 3.6799 -0.0005 23 6 1.9224 3.6057 0.0000 24 6 1.1018 4.8696 0.0000 25 8 0.2769 4.9021 -1.1665 26 14 2.2365 6.3471 0.0000 27 6 1.2932 2.3748 0.0066 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 5.9065 0.8503 -0.8894 32 1 5.9066 0.8505 0.8905 33 1 8.1435 -0.3608 0.0004 34 1 9.7005 -2.9245 -1.5914 35 1 10.1508 -1.5215 -0.5284 36 1 12.1602 -3.1898 0.3342 37 1 11.4108 -2.2212 1.6258 38 1 13.3950 -2.9807 3.3479 39 1 13.8233 -4.6827 3.6458 40 1 14.1450 -3.9490 2.0565 41 1 9.1718 -1.9909 1.9414 42 1 8.3110 -3.5908 1.9140 43 1 5.1387 2.5840 0.0008 44 1 3.7908 4.6434 -0.0005 45 1 0.4732 4.8946 0.8902 46 1 -0.2804 5.6895 -1.2324 47 1 3.0772 6.3418 1.2242 48 1 3.0993 6.3249 -1.2085 49 1 0.2146 2.3197 0.0118 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534806_60476.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:05:21 Heat of formation + Delta-G solvation = -138.428513 kcal Electronic energy + Delta-G solvation = -32774.127048 eV Core-core repulsion = 27991.054006 eV Total energy + Delta-G solvation = -4783.073042 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.137 amu Computer time = 3.95 seconds Orbital eigenvalues (eV) -41.80937 -41.24457 -39.94773 -39.00156 -38.68871 -37.99948 -37.04171 -37.02290 -34.96967 -32.21269 -31.59574 -31.34204 -30.55140 -29.35198 -28.41171 -26.94338 -26.18098 -24.46032 -23.34746 -22.37882 -21.70083 -20.91696 -19.94035 -19.72118 -18.57368 -18.37159 -18.14862 -17.92569 -17.56118 -17.50970 -17.38364 -17.15331 -16.68701 -16.54897 -16.31257 -16.17302 -15.80486 -15.58493 -15.49507 -15.33746 -14.76634 -14.44675 -14.35258 -14.30058 -14.14852 -14.00648 -13.84352 -13.68218 -13.62407 -13.49418 -13.32335 -13.08922 -13.00021 -12.81552 -12.73580 -12.37120 -12.25472 -12.23568 -12.17788 -12.09634 -12.02426 -11.81459 -11.64417 -11.31411 -10.84615 -10.38971 -10.17604 -9.77338 -8.84800 -5.01586 -1.12196 0.17322 0.27448 1.23138 1.43385 1.48288 1.59181 1.65133 1.92235 2.32109 2.47638 2.53690 2.58710 2.86210 3.16065 3.20554 3.31654 3.38837 3.47551 3.55570 3.67966 3.69778 3.72474 3.73514 3.81180 3.87829 3.90418 3.91015 4.02077 4.15431 4.22490 4.22918 4.29327 4.31232 4.42572 4.46765 4.53625 4.54838 4.55413 4.57119 4.66664 4.75490 4.92399 4.97066 5.03194 5.05937 5.36556 5.36880 5.53244 5.96093 6.30850 6.54199 6.57592 7.09611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.300 6.300 3 C 0.110 3.890 4 C 0.104 3.896 5 O -0.275 6.275 6 C 0.038 3.962 7 C 0.517 3.483 8 O -0.506 6.506 9 N -0.719 5.719 10 C 0.124 3.876 11 H 0.122 0.878 12 C -0.130 4.130 13 C -0.103 4.103 14 H 0.112 0.888 15 C -0.600 4.600 16 S 2.418 3.582 17 C -0.659 4.659 18 O -0.933 6.933 19 O -0.937 6.937 20 C -0.153 4.153 21 C -0.167 4.167 22 C -0.121 4.121 23 C -0.070 4.070 24 C -0.070 4.070 25 O -0.546 6.546 26 Si 0.685 3.315 27 C -0.142 4.142 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.402 0.598 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.139 0.861 44 H 0.123 0.877 45 H 0.075 0.925 46 H 0.383 0.617 47 H -0.255 1.255 48 H -0.250 1.250 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.378 9.355 -0.318 9.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.213 6.213 3 C 0.064 3.936 4 C 0.058 3.942 5 O -0.188 6.188 6 C -0.041 4.041 7 C 0.301 3.699 8 O -0.379 6.379 9 N -0.372 5.372 10 C 0.019 3.981 11 H 0.140 0.860 12 C -0.169 4.169 13 C -0.123 4.123 14 H 0.130 0.870 15 C -0.729 4.729 16 S 2.599 3.401 17 C -0.808 4.808 18 O -0.930 6.930 19 O -0.935 6.935 20 C -0.192 4.192 21 C -0.186 4.186 22 C -0.139 4.139 23 C -0.070 4.070 24 C -0.180 4.180 25 O -0.352 6.352 26 Si 0.586 3.414 27 C -0.161 4.161 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.237 0.763 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.156 0.844 44 H 0.140 0.860 45 H 0.093 0.907 46 H 0.230 0.770 47 H -0.180 1.180 48 H -0.175 1.175 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.501 7.178 -0.153 7.988 hybrid contribution 0.841 0.973 -0.066 1.288 sum 4.343 8.151 -0.219 9.239 Atomic orbital electron populations 1.23146 0.78062 1.04462 1.01398 1.86251 1.21406 1.25188 1.88504 1.18255 0.88961 0.85574 1.00839 1.18232 0.88353 0.85647 1.01974 1.86281 1.15997 1.27601 1.88884 1.22492 0.81377 0.96349 1.03921 1.20053 0.82577 0.90527 0.76702 1.90804 1.62578 1.37976 1.46504 1.45772 1.05843 1.09266 1.76327 1.22536 0.92912 0.85698 0.96937 0.85982 1.23380 0.94856 0.99936 0.98763 1.22072 0.90621 1.01310 0.98255 0.87023 1.30299 1.06286 1.19173 1.17114 1.07967 0.77835 0.77301 0.76951 1.30302 1.24114 1.13163 1.13217 1.93625 1.60666 1.86816 1.51908 1.93625 1.86351 1.38887 1.74588 1.23711 0.96308 1.01965 0.97197 1.20918 1.00337 0.90620 1.06738 1.20525 0.92986 0.97556 1.02854 1.19034 0.92694 0.93530 1.01780 1.24659 0.99661 1.02865 0.90832 1.86494 1.58745 1.47776 1.42196 0.95328 0.81112 0.84253 0.80669 1.20918 1.00464 0.90224 1.04505 0.92553 0.92399 0.87788 0.88827 0.88827 0.76308 0.89726 0.88892 0.84482 0.84797 0.85330 0.85073 0.85312 0.88778 0.89487 0.84353 0.85955 0.90712 0.76982 1.17959 1.17494 0.83956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.02 9.81 101.05 0.99 1.01 16 2 O -0.30 -1.59 10.28 -34.23 -0.35 -1.94 16 3 C 0.11 0.51 6.70 -39.12 -0.26 0.25 16 4 C 0.10 0.43 6.70 -39.12 -0.26 0.17 16 5 O -0.28 -1.37 9.45 -47.34 -0.45 -1.82 16 6 C 0.04 0.01 5.22 36.01 0.19 0.20 16 7 C 0.52 1.14 7.91 -10.99 -0.09 1.05 16 8 O -0.51 -3.79 16.10 -14.35 -0.23 -4.03 16 9 N -0.72 1.09 5.35 -53.02 -0.28 0.81 16 10 C 0.12 -0.11 4.24 -67.12 -0.28 -0.40 16 11 H 0.12 0.13 7.46 -51.93 -0.39 -0.26 16 12 C -0.13 0.44 7.39 -25.93 -0.19 0.25 16 13 C -0.10 0.24 3.66 -89.81 -0.33 -0.09 16 14 H 0.11 -0.21 8.13 -51.93 -0.42 -0.63 16 15 C -0.60 2.78 5.64 37.16 0.21 2.98 16 16 S 2.42 -4.11 5.35 -107.50 -0.58 -4.69 16 17 C -0.66 3.03 10.62 101.05 1.07 4.10 16 18 O -0.93 -2.25 18.10 -57.83 -1.05 -3.30 16 19 O -0.94 -2.46 18.10 -57.83 -1.05 -3.51 16 20 C -0.15 0.16 7.43 -25.92 -0.19 -0.04 16 21 C -0.17 -0.30 9.04 -39.46 -0.36 -0.66 16 22 C -0.12 -0.28 8.66 -39.58 -0.34 -0.62 16 23 C -0.07 -0.18 5.42 -104.62 -0.57 -0.75 16 24 C -0.07 0.01 2.81 36.00 0.10 0.11 16 25 O -0.55 -0.01 12.75 -35.23 -0.45 -0.46 16 26 Si 0.69 -0.97 29.78 -169.99 -5.06 -6.03 16 27 C -0.14 -0.43 8.60 -39.46 -0.34 -0.77 16 28 H 0.06 -0.02 7.65 -51.93 -0.40 -0.42 16 29 H 0.06 0.00 7.68 -51.93 -0.40 -0.40 16 30 H 0.10 -0.05 8.14 -51.93 -0.42 -0.48 16 31 H 0.09 -0.24 7.66 -51.93 -0.40 -0.63 16 32 H 0.09 -0.24 7.66 -51.93 -0.40 -0.64 16 33 H 0.40 -2.05 8.73 -40.82 -0.36 -2.41 16 34 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 35 H 0.09 -0.48 8.08 -51.93 -0.42 -0.90 16 36 H 0.14 -0.94 8.14 -51.93 -0.42 -1.36 16 37 H 0.13 -0.92 7.84 -51.93 -0.41 -1.33 16 38 H 0.13 -0.82 8.14 -51.93 -0.42 -1.24 16 39 H 0.13 -0.55 8.14 -51.92 -0.42 -0.98 16 40 H 0.13 -0.81 8.14 -51.92 -0.42 -1.23 16 41 H 0.09 -0.22 7.90 -51.93 -0.41 -0.63 16 42 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 43 H 0.14 -0.22 6.30 -52.48 -0.33 -0.55 16 44 H 0.12 0.14 4.87 -52.49 -0.26 -0.12 16 45 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 46 H 0.38 -1.95 8.74 45.56 0.40 -1.55 16 47 H -0.25 -0.21 7.11 56.52 0.40 0.19 16 48 H -0.25 -0.43 7.11 56.52 0.40 -0.02 16 49 H 0.14 0.20 6.30 -52.49 -0.33 -0.13 16 LS Contribution 419.28 15.07 6.32 6.32 Total: 0.00 -18.24 419.28 -10.91 -29.15 By element: Atomic # 1 Polarization: -10.24 SS G_CDS: -7.08 Total: -17.33 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -0.65 Total: 6.82 kcal Atomic # 7 Polarization: 1.09 SS G_CDS: -0.28 Total: 0.81 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -3.57 Total: -15.05 kcal Atomic # 14 Polarization: -0.97 SS G_CDS: -5.06 Total: -6.03 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -0.58 Total: -4.69 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -18.24 -10.91 -29.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_60476.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.281 kcal (2) G-P(sol) polarization free energy of solvation -18.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.95 seconds