Wall clock time and date at job start Sun Mar 7 2021 06:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35960 * 116.99976 * 2 1 4 4 C 1.39454 * 120.11974 * 179.72223 * 3 2 1 5 5 O 1.34782 * 133.24072 * 0.67910 * 4 3 2 6 6 C 1.34934 * 110.84120 * 179.56895 * 5 4 3 7 7 C 1.46987 * 125.14001 * 179.75458 * 6 5 4 8 8 O 1.21650 * 119.99926 * 179.97438 * 7 6 5 9 9 N 1.34779 * 119.99982 * 0.02562 * 7 6 5 10 10 C 1.46500 * 119.99939 * 180.02562 * 9 7 6 11 11 H 1.09005 * 112.84934 * 334.66474 * 10 9 7 12 12 C 1.53782 * 113.61527 * 105.85703 * 10 9 7 13 13 C 1.53956 * 87.01686 * 139.95076 * 12 10 9 14 14 H 1.09006 * 113.53665 * 89.18802 * 13 12 10 15 15 C 1.52996 * 113.74405 * 220.05596 * 13 12 10 16 16 S 1.81401 * 109.47290 * 272.59755 * 15 13 12 17 17 C 1.81397 * 101.92332 * 179.97438 * 16 15 13 18 18 O 1.42097 * 108.57955 * 294.48787 * 16 15 13 19 19 O 1.42104 * 108.57653 * 65.51695 * 16 15 13 20 20 C 1.53780 * 113.61474 * 203.47033 * 10 9 7 21 21 C 1.35811 * 109.71893 * 359.75312 * 6 5 4 22 22 C 1.40611 * 119.13587 * 179.78098 * 4 3 2 23 23 C 1.39782 * 120.11873 * 0.50008 * 22 4 3 24 24 C 1.50694 * 120.09101 * 179.77093 * 23 22 4 25 25 O 1.42900 * 109.47367 * 74.97960 * 24 23 22 26 26 Si 1.86302 * 109.47118 * 194.97877 * 24 23 22 27 27 C 1.36627 * 119.80907 * 359.75026 * 23 22 4 28 28 C 1.38258 * 120.12450 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46938 * 59.99679 * 1 2 3 31 31 H 1.09004 * 109.46926 * 299.99800 * 1 2 3 32 32 H 0.96999 * 119.99880 * 359.97438 * 9 7 6 33 33 H 1.08996 * 113.62007 * 254.52834 * 12 10 9 34 34 H 1.09002 * 113.61167 * 25.43567 * 12 10 9 35 35 H 1.08994 * 109.47248 * 32.59869 * 15 13 12 36 36 H 1.08998 * 109.47107 * 152.60218 * 15 13 12 37 37 H 1.09004 * 109.47181 * 60.00266 * 17 16 15 38 38 H 1.08998 * 109.47727 * 180.02562 * 17 16 15 39 39 H 1.08998 * 109.47667 * 300.00485 * 17 16 15 40 40 H 1.08999 * 113.61044 * 334.56451 * 20 10 9 41 41 H 1.08995 * 113.61634 * 105.38520 * 20 10 9 42 42 H 1.07996 * 126.95372 * 180.02562 * 21 6 5 43 43 H 1.09006 * 109.47454 * 314.97494 * 24 23 22 44 44 H 0.96703 * 113.99911 * 59.99340 * 25 24 23 45 45 H 1.48498 * 110.00376 * 179.97438 * 26 24 23 46 46 H 1.48506 * 109.99896 * 301.32162 * 26 24 23 47 47 H 1.08005 * 119.74642 * 180.02562 * 27 23 22 48 48 H 1.07998 * 119.65517 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4387 1.2873 0.0058 5 8 4.4142 0.3572 0.0005 6 6 5.6319 0.9386 0.0011 7 6 6.9132 0.2184 0.0012 8 8 7.9596 0.8388 0.0013 9 7 6.9288 -1.1293 0.0003 10 6 8.2059 -1.8471 0.0010 11 1 9.0201 -1.2627 -0.4276 12 6 8.5529 -2.4855 1.3564 13 6 9.0725 -3.6974 0.5615 14 1 10.1245 -3.6194 0.2871 15 6 8.7220 -5.0454 1.1945 16 16 10.0039 -5.5018 2.3941 17 6 9.3936 -7.0965 3.0064 18 8 11.2212 -5.7207 1.6946 19 8 9.9767 -4.5665 3.4636 20 6 8.1102 -3.2752 -0.5613 21 6 5.4945 2.2897 0.0014 22 6 4.0555 2.5509 0.0010 23 6 3.2766 3.7116 0.0011 24 6 3.9383 5.0655 0.0011 25 8 4.4611 5.3403 -1.3001 26 14 2.6864 6.3685 0.4552 27 6 1.9137 3.6150 0.0006 28 6 1.2958 2.3726 0.0005 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 6.0944 -1.6239 -0.0001 33 1 9.3320 -1.9540 1.9027 34 1 7.6802 -2.7078 1.9705 35 1 7.7602 -4.9696 1.7018 36 1 8.6638 -5.8075 0.4175 37 1 9.3153 -7.7986 2.1762 38 1 10.0863 -7.4893 3.7507 39 1 8.4121 -6.9600 3.4604 40 1 7.1163 -3.7137 -0.4723 41 1 8.5311 -3.3799 -1.5612 42 1 6.2875 3.0229 0.0015 43 1 4.7504 5.0731 0.7281 44 1 3.7926 5.3494 -1.9987 45 1 3.3266 7.7084 0.4594 46 1 1.5582 6.3471 -0.5102 47 1 1.3129 4.5125 0.0003 48 1 0.2175 2.3119 0.0005 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534806_6672420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:05:41 Heat of formation + Delta-G solvation = -99.979980 kcal Electronic energy + Delta-G solvation = -34367.599454 eV Core-core repulsion = 29485.279004 eV Total energy + Delta-G solvation = -4882.320450 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.121 amu Computer time = 5.22 seconds Orbital eigenvalues (eV) -43.67158 -41.30729 -40.65905 -39.49296 -39.13250 -37.97346 -37.10151 -37.00851 -35.02547 -33.57074 -32.00141 -31.48905 -30.86991 -30.32435 -28.71756 -26.92400 -26.43650 -25.65272 -23.96927 -23.49387 -21.94127 -21.67541 -21.03090 -19.91540 -19.68148 -18.99786 -18.58675 -18.05413 -17.80722 -17.68011 -17.51363 -17.14091 -17.02782 -16.75638 -16.66572 -16.30796 -16.21634 -15.89516 -15.71322 -15.68811 -14.81639 -14.75879 -14.66144 -14.52229 -14.37316 -14.27253 -14.10222 -13.83971 -13.64578 -13.49530 -13.47281 -13.38234 -13.29548 -13.06507 -12.97527 -12.76769 -12.64784 -12.37264 -12.25439 -12.14761 -12.07385 -11.68882 -11.63652 -11.40152 -11.22836 -10.95274 -10.61930 -10.23745 -9.77964 -9.00836 -5.00655 -1.09459 -0.59657 0.10582 0.70647 1.20463 1.29115 1.51393 1.67629 1.91128 1.93298 2.03726 2.04737 2.39053 2.57102 2.88987 3.17885 3.18781 3.24763 3.36048 3.46450 3.49649 3.56414 3.59272 3.72438 3.75189 3.81824 3.85942 3.88631 3.99713 4.04952 4.06263 4.08240 4.17117 4.25930 4.42191 4.46070 4.47230 4.51313 4.55209 4.57241 4.58420 4.77537 4.82000 4.88276 4.94026 5.01714 5.06216 5.22197 5.27799 5.36873 5.62448 6.13571 6.32567 6.38438 6.93145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.311 6.311 3 C 0.150 3.850 4 C 0.046 3.954 5 O -0.174 6.174 6 C -0.025 4.025 7 C 0.603 3.397 8 O -0.507 6.507 9 N -0.707 5.707 10 C 0.120 3.880 11 H 0.124 0.876 12 C -0.152 4.152 13 C -0.102 4.102 14 H 0.112 0.888 15 C -0.600 4.600 16 S 2.418 3.582 17 C -0.659 4.659 18 O -0.938 6.938 19 O -0.933 6.933 20 C -0.130 4.130 21 C -0.103 4.103 22 C -0.081 4.081 23 C -0.094 4.094 24 C -0.074 4.074 25 O -0.525 6.525 26 Si 0.692 3.308 27 C -0.096 4.096 28 C -0.177 4.177 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.409 0.591 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.175 0.825 43 H 0.119 0.881 44 H 0.375 0.625 45 H -0.255 1.255 46 H -0.258 1.258 47 H 0.140 0.860 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.244 -4.048 0.399 10.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.104 3.896 4 C -0.002 4.002 5 O -0.076 6.076 6 C -0.075 4.075 7 C 0.389 3.611 8 O -0.383 6.383 9 N -0.358 5.358 10 C 0.016 3.984 11 H 0.142 0.858 12 C -0.191 4.191 13 C -0.122 4.122 14 H 0.130 0.870 15 C -0.729 4.729 16 S 2.600 3.400 17 C -0.808 4.808 18 O -0.935 6.935 19 O -0.930 6.930 20 C -0.169 4.169 21 C -0.123 4.123 22 C -0.083 4.083 23 C -0.095 4.095 24 C -0.183 4.183 25 O -0.331 6.331 26 Si 0.593 3.407 27 C -0.114 4.114 28 C -0.196 4.196 29 H 0.123 0.877 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.244 0.756 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.192 0.808 43 H 0.137 0.863 44 H 0.223 0.777 45 H -0.179 1.179 46 H -0.183 1.183 47 H 0.158 0.842 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.530 -2.908 0.728 8.105 hybrid contribution -1.443 -1.000 -1.382 2.234 sum -8.973 -3.909 -0.654 9.810 Atomic orbital electron populations 1.23190 0.77315 1.04737 1.01811 1.86167 1.22156 1.25714 1.88391 1.17739 0.86492 0.85870 0.99460 1.18777 0.87433 0.86980 1.07039 1.84045 1.12667 1.34736 1.76161 1.21978 0.83870 0.92620 1.09021 1.16656 0.85423 0.82253 0.76803 1.90927 1.30315 1.67430 1.49617 1.45871 1.10069 1.05645 1.74178 1.22630 0.86758 0.91708 0.97346 0.85794 1.23743 1.02640 0.95680 0.97044 1.22097 1.01280 0.90759 0.98057 0.86980 1.30298 1.18890 1.06794 1.16931 1.07958 0.77370 0.77725 0.76972 1.30301 1.13707 1.23366 1.13425 1.93623 1.40013 1.85713 1.74136 1.93626 1.86753 1.59407 1.53226 1.23372 1.00297 0.94333 0.98901 1.22762 0.94773 0.94349 1.00446 1.19412 0.92630 0.92052 1.04174 1.19406 0.92814 0.94340 1.02937 1.25035 1.06870 0.97934 0.88502 1.86644 1.37571 1.92652 1.16247 0.94887 0.77536 0.77910 0.90384 1.20588 0.93489 0.97811 0.99505 1.20964 1.00355 0.90537 1.07782 0.87658 0.92164 0.92003 0.75552 0.89325 0.88670 0.84736 0.84453 0.85316 0.85085 0.85312 0.88786 0.89602 0.80774 0.86313 0.77720 1.17950 1.18328 0.84235 0.83504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 101.05 0.99 0.92 16 2 O -0.31 -0.30 10.50 -19.61 -0.21 -0.51 16 3 C 0.15 0.20 6.70 -39.12 -0.26 -0.06 16 4 C 0.05 0.13 7.35 -38.23 -0.28 -0.15 16 5 O -0.17 -0.51 10.28 2.62 0.03 -0.49 16 6 C -0.02 -0.07 7.07 -36.91 -0.26 -0.33 16 7 C 0.60 1.83 7.80 -12.71 -0.10 1.73 16 8 O -0.51 -3.04 16.44 5.23 0.09 -2.95 16 9 N -0.71 -0.06 5.36 -54.23 -0.29 -0.35 16 10 C 0.12 -0.07 4.21 -67.12 -0.28 -0.36 16 11 H 0.12 0.07 7.50 -51.93 -0.39 -0.32 16 12 C -0.15 0.12 7.45 -25.83 -0.19 -0.07 16 13 C -0.10 0.22 3.65 -89.72 -0.33 -0.10 16 14 H 0.11 -0.22 8.13 -51.93 -0.42 -0.65 16 15 C -0.60 2.62 5.65 37.16 0.21 2.83 16 16 S 2.42 -3.92 5.35 -107.50 -0.58 -4.49 16 17 C -0.66 2.94 10.62 101.05 1.07 4.01 16 18 O -0.94 -2.46 18.10 -57.83 -1.05 -3.51 16 19 O -0.93 -2.29 18.10 -57.83 -1.05 -3.34 16 20 C -0.13 0.38 7.39 -25.92 -0.19 0.19 16 21 C -0.10 -0.30 10.68 -37.23 -0.40 -0.69 16 22 C -0.08 -0.20 6.16 -105.20 -0.65 -0.84 16 23 C -0.09 -0.05 5.26 -104.63 -0.55 -0.60 16 24 C -0.07 0.01 2.70 36.00 0.10 0.10 16 25 O -0.52 -0.75 12.88 -35.23 -0.45 -1.20 16 26 Si 0.69 -1.03 30.25 -169.99 -5.14 -6.17 16 27 C -0.10 0.09 8.62 -39.97 -0.34 -0.26 16 28 C -0.18 0.16 9.03 -39.38 -0.36 -0.20 16 29 H 0.11 -0.47 8.14 -51.93 -0.42 -0.89 16 30 H 0.06 -0.25 7.66 -51.93 -0.40 -0.65 16 31 H 0.06 -0.27 7.66 -51.93 -0.40 -0.66 16 32 H 0.41 -0.74 8.43 -40.82 -0.34 -1.08 16 33 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 34 H 0.09 -0.16 7.91 -51.93 -0.41 -0.57 16 35 H 0.13 -0.87 7.86 -51.93 -0.41 -1.28 16 36 H 0.14 -0.91 8.14 -51.92 -0.42 -1.33 16 37 H 0.13 -0.79 8.14 -51.92 -0.42 -1.22 16 38 H 0.13 -0.54 8.14 -51.93 -0.42 -0.96 16 39 H 0.13 -0.79 8.14 -51.93 -0.42 -1.22 16 40 H 0.09 -0.40 8.07 -51.93 -0.42 -0.82 16 41 H 0.09 -0.28 8.14 -51.93 -0.42 -0.70 16 42 H 0.17 0.40 8.06 -52.49 -0.42 -0.02 16 43 H 0.12 -0.05 7.96 -51.93 -0.41 -0.46 16 44 H 0.38 -0.59 8.70 45.56 0.40 -0.20 16 45 H -0.25 -0.50 7.11 56.52 0.40 -0.10 16 46 H -0.26 0.08 6.69 56.52 0.38 0.46 16 47 H 0.14 -0.39 4.81 -52.48 -0.25 -0.65 16 48 H 0.15 -0.53 6.26 -52.49 -0.33 -0.86 16 LS Contribution 417.20 15.07 6.29 6.29 Total: 0.00 -14.57 417.20 -10.57 -25.14 By element: Atomic # 1 Polarization: -8.15 SS G_CDS: -6.39 Total: -14.54 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -1.82 Total: 6.11 kcal Atomic # 7 Polarization: -0.06 SS G_CDS: -0.29 Total: -0.35 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -2.64 Total: -11.99 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: -5.14 Total: -6.17 kcal Atomic # 16 Polarization: -3.92 SS G_CDS: -0.58 Total: -4.49 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -14.57 -10.57 -25.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_6672420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.835 kcal (2) G-P(sol) polarization free energy of solvation -14.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.22 seconds