Wall clock time and date at job start Sun Mar 7 2021 06:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.46870 * 2 1 4 4 C 1.35899 * 116.99787 * 84.95143 * 3 2 1 5 5 C 1.38735 * 120.05687 * 174.27710 * 4 3 2 6 6 C 1.38146 * 119.94170 * 179.74919 * 5 4 3 7 7 C 1.38266 * 120.06077 * 0.49990 * 6 5 4 8 8 C 1.50692 * 119.94633 * 179.75259 * 7 6 5 9 9 O 1.42902 * 109.46871 * 245.02181 * 8 7 6 10 10 Si 1.86294 * 109.47459 * 5.02074 * 8 7 6 11 11 C 1.38269 * 120.10788 * 359.77314 * 7 6 5 12 12 C 1.38150 * 120.05694 * 359.97438 * 11 7 6 13 13 C 1.50696 * 109.47287 * 240.00342 * 2 1 3 14 14 O 1.21284 * 119.99909 * 114.99590 * 13 2 1 15 15 N 1.34775 * 120.00034 * 294.99774 * 13 2 1 16 16 C 1.46504 * 119.99971 * 179.97438 * 15 13 2 17 17 H 1.08993 * 112.84986 * 336.19924 * 16 15 13 18 18 C 1.53783 * 113.61142 * 107.50631 * 16 15 13 19 19 C 1.53780 * 87.08370 * 89.11552 * 18 16 15 20 20 H 1.08999 * 113.61179 * 270.88333 * 19 18 16 21 21 C 1.52991 * 113.68988 * 139.99256 * 19 18 16 22 22 C 1.47196 * 109.47234 * 87.46508 * 21 19 18 23 23 N 7.93683 * 110.14313 * 186.51673 * 2 1 3 24 24 C 1.53776 * 113.61472 * 204.99685 * 16 15 13 25 25 H 1.08994 * 109.47126 * 299.99790 * 1 2 3 26 26 H 1.09005 * 109.47391 * 59.99639 * 1 2 3 27 27 H 1.09006 * 109.47113 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47633 * 120.00089 * 2 1 3 29 29 H 1.07999 * 120.02498 * 359.97438 * 5 4 3 30 30 H 1.08003 * 119.96843 * 180.23143 * 6 5 4 31 31 H 1.09002 * 109.47328 * 125.02375 * 8 7 6 32 32 H 0.96705 * 113.99696 * 180.02562 * 9 8 7 33 33 H 1.48500 * 110.00279 * 178.68389 * 10 8 7 34 34 H 1.48503 * 110.00106 * 300.00272 * 10 8 7 35 35 H 1.07995 * 119.97457 * 179.97438 * 11 7 6 36 36 H 1.07995 * 120.03029 * 179.97438 * 12 11 7 37 37 H 0.96993 * 120.00139 * 0.02562 * 15 13 2 38 38 H 1.09002 * 113.61162 * 203.66576 * 18 16 15 39 39 H 1.09002 * 113.61558 * 334.56171 * 18 16 15 40 40 H 1.08999 * 109.46951 * 207.46500 * 21 19 18 41 41 H 1.09001 * 109.47698 * 327.46076 * 21 19 18 42 42 H 1.09008 * 113.61407 * 25.43876 * 24 16 15 43 43 H 1.08998 * 113.61644 * 156.25211 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.1114 1.9645 1.2062 5 6 2.6774 3.2281 1.2932 6 6 2.7784 3.8555 2.5198 7 6 2.3254 3.2209 3.6617 8 6 2.4419 3.9053 4.9992 9 8 3.3411 3.1715 5.8329 10 14 3.0907 5.6348 4.7574 11 6 1.7660 1.9591 3.5784 12 6 1.6580 1.3296 2.3534 13 6 2.0323 -0.7103 -1.2305 14 8 2.6529 -0.0977 -2.0734 15 7 1.7920 -2.0263 -1.3942 16 6 2.2799 -2.7167 -2.5907 17 1 2.4403 -2.0429 -3.4323 18 6 3.4648 -3.6584 -2.3184 19 6 2.4259 -4.7581 -2.0425 20 1 2.1028 -4.8024 -1.0024 21 6 2.8167 -6.1273 -2.6021 22 6 3.6333 -6.8473 -1.6115 23 7 4.2632 -7.4032 -0.8457 24 6 1.4676 -3.9714 -2.9522 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 0.8899 29 1 3.0355 3.7224 0.4022 30 1 3.2156 4.8407 2.5875 31 1 1.4608 3.9480 5.4722 32 1 3.4642 3.5553 6.7120 33 1 3.1802 6.3313 6.0659 34 1 4.4280 5.5902 4.1133 35 1 1.4133 1.4653 4.4717 36 1 1.2214 0.3439 2.2889 37 1 1.2953 -2.5161 -0.7203 38 1 4.0809 -3.8502 -3.1969 39 1 4.0504 -3.3811 -1.4419 40 1 1.9161 -6.7023 -2.8175 41 1 3.3910 -5.9947 -3.5190 42 1 0.4407 -3.9469 -2.5874 43 1 1.5365 -4.2480 -4.0043 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_10157680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:06:18 Heat of formation + Delta-G solvation = -20.937458 kcal Electronic energy + Delta-G solvation = -25432.579905 eV Core-core repulsion = 21638.919174 eV Total energy + Delta-G solvation = -3793.660731 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.87704 -41.04320 -39.79428 -38.84314 -37.48278 -37.33112 -34.92991 -33.16502 -32.10242 -31.60187 -30.75662 -26.73574 -26.59924 -25.72800 -24.45234 -23.83710 -22.42857 -21.51343 -20.31005 -19.44164 -18.85692 -18.53988 -18.22326 -17.30772 -16.88142 -16.82898 -16.59981 -16.06375 -16.01672 -15.88269 -15.47142 -15.40895 -15.02444 -14.54629 -14.39095 -14.36105 -14.03765 -13.91967 -13.91372 -13.76664 -13.57937 -13.33087 -13.24795 -13.08331 -12.90117 -12.41925 -12.34608 -12.09388 -11.97025 -11.85044 -11.70104 -11.45180 -11.10468 -10.92808 -10.47516 -10.12157 -10.05442 -9.23059 -4.93369 0.22556 0.31470 1.30611 1.39463 1.49290 1.58542 1.83304 1.88271 1.94154 2.48787 2.60022 3.09491 3.42391 3.45442 3.55553 3.65538 3.71741 3.80124 3.81382 3.87131 3.91997 3.95171 3.99042 4.23456 4.31992 4.43408 4.48943 4.58131 4.64334 4.68841 4.69881 4.78068 4.87341 4.93646 4.97437 4.98251 5.10741 5.12264 5.17252 5.20397 5.26964 5.27581 5.48334 5.61833 5.67431 6.25239 6.44997 6.60001 6.68467 7.10426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.062 3.938 3 O -0.311 6.311 4 C 0.120 3.880 5 C -0.160 4.160 6 C -0.080 4.080 7 C -0.123 4.123 8 C -0.076 4.076 9 O -0.559 6.559 10 Si 0.755 3.245 11 C -0.058 4.058 12 C -0.208 4.208 13 C 0.518 3.482 14 O -0.569 6.569 15 N -0.692 5.692 16 C 0.104 3.896 17 H 0.084 0.916 18 C -0.157 4.157 19 C -0.100 4.100 20 H 0.100 0.900 21 C -0.015 4.015 22 C 0.233 3.767 23 N -0.520 5.520 24 C -0.113 4.113 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.136 0.864 30 H 0.143 0.857 31 H 0.099 0.901 32 H 0.394 0.606 33 H -0.285 1.285 34 H -0.303 1.303 35 H 0.142 0.858 36 H 0.157 0.843 37 H 0.419 0.581 38 H 0.106 0.894 39 H 0.049 0.951 40 H 0.146 0.854 41 H 0.135 0.865 42 H 0.096 0.904 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 -1.318 -0.910 9.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.002 3.998 3 O -0.225 6.225 4 C 0.075 3.925 5 C -0.179 4.179 6 C -0.098 4.098 7 C -0.124 4.124 8 C -0.185 4.185 9 O -0.369 6.369 10 Si 0.661 3.339 11 C -0.076 4.076 12 C -0.226 4.226 13 C 0.304 3.696 14 O -0.446 6.446 15 N -0.345 5.345 16 C -0.001 4.001 17 H 0.103 0.897 18 C -0.196 4.196 19 C -0.119 4.119 20 H 0.118 0.882 21 C -0.055 4.055 22 C -0.083 4.083 23 N -0.198 5.198 24 C -0.151 4.151 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.129 0.871 28 H 0.138 0.862 29 H 0.154 0.846 30 H 0.161 0.839 31 H 0.117 0.883 32 H 0.245 0.755 33 H -0.212 1.212 34 H -0.231 1.231 35 H 0.160 0.840 36 H 0.174 0.826 37 H 0.257 0.743 38 H 0.124 0.876 39 H 0.068 0.932 40 H 0.164 0.836 41 H 0.153 0.847 42 H 0.114 0.886 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.462 -1.457 -0.902 7.656 hybrid contribution 0.552 -0.436 1.287 1.467 sum -6.910 -1.893 0.386 7.175 Atomic orbital electron populations 1.22359 0.90081 1.05831 1.04503 1.22449 0.97522 0.82114 0.97694 1.86187 1.81510 1.27024 1.27740 1.19232 0.95785 0.93114 0.84347 1.20561 1.03936 0.94278 0.99080 1.20961 0.97639 0.99834 0.91346 1.19410 1.02709 0.96665 0.93598 1.24853 0.97626 1.05394 0.90642 1.86551 1.66824 1.53511 1.30023 0.94225 0.82558 0.75567 0.81544 1.21025 0.95583 0.93436 0.97516 1.21532 1.06629 1.02603 0.91817 1.20500 0.78955 0.82897 0.87291 1.90751 1.41451 1.67124 1.45314 1.45421 1.57145 1.07717 1.24246 1.21995 0.96579 0.93871 0.87650 0.89733 1.23672 0.96944 0.96325 1.02664 1.22553 0.97075 0.91346 1.00975 0.88224 1.19733 0.99030 0.93515 0.93191 1.30189 0.92515 0.92042 0.93532 1.81355 1.12810 1.12438 1.13232 1.23329 0.98827 0.90830 1.02104 0.89597 0.91884 0.87055 0.86203 0.84609 0.83939 0.88344 0.75530 1.21234 1.23085 0.84023 0.82590 0.74307 0.87594 0.93199 0.83611 0.84733 0.88559 0.85845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.13 9.12 71.98 0.66 1.79 16 2 C 0.06 -0.05 2.64 29.85 0.08 0.03 16 3 O -0.31 -2.28 9.34 -73.43 -0.69 -2.97 16 4 C 0.12 0.64 6.60 22.51 0.15 0.79 16 5 C -0.16 -0.91 9.99 22.37 0.22 -0.68 16 6 C -0.08 -0.28 8.66 22.25 0.19 -0.09 16 7 C -0.12 -0.35 5.38 -19.85 -0.11 -0.46 16 8 C -0.08 0.03 2.79 71.23 0.20 0.23 16 9 O -0.56 -1.30 12.81 -148.98 -1.91 -3.21 16 10 Si 0.75 -0.74 29.85 68.60 2.05 1.31 16 11 C -0.06 -0.08 9.68 22.26 0.22 0.13 16 12 C -0.21 -0.16 8.24 22.37 0.18 0.03 16 13 C 0.52 1.60 7.18 87.66 0.63 2.23 16 14 O -0.57 -8.19 16.11 15.95 0.26 -7.93 16 15 N -0.69 3.83 5.22 -440.04 -2.30 1.53 16 16 C 0.10 -0.62 4.32 45.52 0.20 -0.42 16 17 H 0.08 -0.04 7.46 -2.39 -0.02 -0.06 16 18 C -0.16 1.04 7.43 31.12 0.23 1.27 16 19 C -0.10 1.23 3.49 -10.27 -0.04 1.20 16 20 H 0.10 -1.22 8.12 -2.39 -0.02 -1.24 16 21 C -0.02 0.20 5.54 28.78 0.16 0.36 16 22 C 0.23 -0.29 15.42 89.43 1.38 1.09 16 23 N -0.52 -4.59 18.54 20.01 0.37 -4.22 16 24 C -0.11 1.60 7.39 31.12 0.23 1.83 16 25 H 0.09 -0.63 6.91 -2.39 -0.02 -0.65 16 26 H 0.06 -0.18 8.14 -2.38 -0.02 -0.20 16 27 H 0.11 -1.49 7.92 -2.38 -0.02 -1.51 16 28 H 0.12 -0.68 6.31 -2.39 -0.02 -0.70 16 29 H 0.14 0.65 8.06 -2.91 -0.02 0.63 16 30 H 0.14 0.04 4.86 -2.91 -0.01 0.02 16 31 H 0.10 -0.50 7.96 -2.39 -0.02 -0.52 16 32 H 0.39 -2.24 8.74 -74.05 -0.65 -2.89 16 33 H -0.29 -0.81 7.11 99.48 0.71 -0.10 16 34 H -0.30 -2.11 7.05 99.48 0.70 -1.40 16 35 H 0.14 -0.26 8.06 -2.91 -0.02 -0.28 16 36 H 0.16 -0.85 5.43 -2.91 -0.02 -0.87 16 37 H 0.42 -5.32 8.48 -92.71 -0.79 -6.11 16 38 H 0.11 -0.86 7.90 -2.39 -0.02 -0.88 16 39 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.15 -2.73 8.14 -2.39 -0.02 -2.75 16 41 H 0.13 -2.27 7.85 -2.39 -0.02 -2.29 16 42 H 0.10 -1.56 8.14 -2.38 -0.02 -1.58 16 43 H 0.12 -2.11 8.10 -2.39 -0.02 -2.13 16 Total: 0.00 -33.77 364.63 2.02 -31.75 By element: Atomic # 1 Polarization: -25.26 SS G_CDS: -0.34 Total: -25.60 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 4.58 Total: 9.33 kcal Atomic # 7 Polarization: -0.75 SS G_CDS: -1.93 Total: -2.68 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -2.34 Total: -14.10 kcal Atomic # 14 Polarization: -0.74 SS G_CDS: 2.05 Total: 1.31 kcal Total: -33.77 2.02 -31.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_10157680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.810 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds