Wall clock time and date at job start Sun Mar 7 2021 06:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35650 * 116.99584 * 2 1 4 4 C 1.38401 * 120.12436 * 0.02562 * 3 2 1 5 5 C 1.38726 * 120.03158 * 180.02562 * 4 3 2 6 6 O 1.35720 * 119.86309 * 179.97438 * 5 4 3 7 7 C 1.42899 * 116.99675 * 0.02562 * 6 5 4 8 8 C 1.39146 * 120.27327 * 359.97438 * 5 4 3 9 9 C 1.50700 * 119.87647 * 179.97438 * 8 5 4 10 10 O 1.42896 * 109.47310 * 284.99729 * 9 8 5 11 11 Si 1.86302 * 109.46995 * 164.99794 * 9 8 5 12 12 C 1.37583 * 120.24169 * 359.73776 * 8 5 4 13 13 C 1.39814 * 119.95918 * 0.53961 * 12 8 5 14 14 C 1.47303 * 120.13281 * 179.73921 * 13 12 8 15 15 O 1.21620 * 120.00041 * 179.72095 * 14 13 12 16 16 N 1.34783 * 119.99691 * 359.72859 * 14 13 12 17 17 C 1.46504 * 119.99823 * 179.97438 * 16 14 13 18 18 H 1.09003 * 112.84929 * 23.79264 * 17 16 14 19 19 C 1.53771 * 113.61623 * 154.99599 * 17 16 14 20 20 C 1.53777 * 87.08220 * 89.19710 * 19 17 16 21 21 H 1.09006 * 113.61610 * 270.79903 * 20 19 17 22 22 C 1.53006 * 113.61489 * 139.98351 * 20 19 17 23 23 C 1.47201 * 109.47093 * 176.53056 * 22 20 19 24 24 N 9.59943 * 158.18707 * 94.53555 * 2 1 3 25 25 C 1.53779 * 87.17120 * 25.39196 * 20 19 17 26 26 H 1.09004 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47101 * 300.00191 * 1 2 3 28 28 H 1.08997 * 109.47437 * 60.00663 * 1 2 3 29 29 H 1.07995 * 119.98209 * 359.97438 * 4 3 2 30 30 H 1.09006 * 109.47183 * 299.99129 * 7 6 5 31 31 H 1.08998 * 109.47951 * 59.99400 * 7 6 5 32 32 H 1.09003 * 109.46951 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.47499 * 44.99864 * 9 8 5 34 34 H 0.96695 * 113.99930 * 300.00377 * 10 9 8 35 35 H 1.48500 * 110.00066 * 180.02562 * 11 9 8 36 36 H 1.48506 * 109.99946 * 301.32013 * 11 9 8 37 37 H 1.07995 * 120.01775 * 180.27901 * 12 8 5 38 38 H 0.96994 * 119.99900 * 359.97438 * 16 14 13 39 39 H 1.09006 * 113.61359 * 334.64713 * 19 17 16 40 40 H 1.09000 * 113.61519 * 203.74868 * 19 17 16 41 41 H 1.09001 * 109.47002 * 296.52757 * 22 20 19 42 42 H 1.08993 * 109.46955 * 56.53194 * 22 20 19 43 43 H 1.08999 * 113.61559 * 89.15873 * 25 20 19 44 44 H 1.09002 * 113.60988 * 220.05739 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2934 2.3710 0.0005 5 6 1.9252 3.6061 0.0000 6 8 1.1850 4.7437 0.0000 7 6 -0.2360 4.5931 0.0011 8 6 3.3145 3.6834 -0.0005 9 6 3.9914 5.0298 -0.0017 10 8 3.8934 5.6111 -1.3034 11 14 5.7863 4.8228 0.4525 12 6 4.0724 2.5351 0.0049 13 6 3.4461 1.2851 -0.0004 14 6 4.2538 0.0533 -0.0004 15 8 3.7065 -1.0328 0.0001 16 7 5.5995 0.1299 -0.0008 17 6 6.4029 -1.0952 -0.0003 18 1 5.8663 -1.9534 -0.4048 19 6 7.8083 -0.9105 -0.5963 20 6 8.2756 -0.5423 0.8217 21 1 8.1918 0.5209 1.0468 22 6 9.6448 -1.1204 1.1853 23 6 10.0385 -0.6459 2.5219 24 7 10.3412 -0.2821 3.5558 25 6 7.0955 -1.3778 1.3453 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 0.2149 2.3164 0.0005 30 1 -0.5439 4.0435 -0.8885 31 1 -0.5426 4.0442 0.8915 32 1 -0.7056 5.5767 0.0015 33 1 3.5057 5.6814 0.7247 34 1 4.3054 5.0840 -2.0015 35 1 6.4651 6.1436 0.4555 36 1 5.9018 4.1899 1.7909 37 1 5.1504 2.5994 0.0090 38 1 6.0359 0.9961 -0.0015 39 1 7.8766 -0.0863 -1.3064 40 1 8.2469 -1.8338 -0.9747 41 1 9.5906 -2.2090 1.1876 42 1 10.3828 -0.7948 0.4522 43 1 7.3389 -2.4291 1.4988 44 1 6.5892 -0.9302 2.2006 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_12297780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:06:33 Heat of formation + Delta-G solvation = -55.841296 kcal Electronic energy + Delta-G solvation = -28868.022789 eV Core-core repulsion = 24754.166322 eV Total energy + Delta-G solvation = -4113.856467 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.12177 -41.02639 -40.12159 -39.25833 -38.43646 -37.39179 -36.97364 -34.55976 -32.25224 -31.95905 -30.65446 -28.99757 -28.16688 -26.50067 -26.14263 -25.13930 -23.94973 -22.72897 -21.66235 -20.27242 -19.91761 -18.97977 -18.43717 -18.04710 -17.86888 -17.23473 -17.06469 -16.61228 -16.40870 -16.30986 -15.96850 -15.86021 -15.79758 -15.61864 -15.39420 -15.33008 -14.80868 -14.36817 -14.21287 -14.02591 -13.93802 -13.69257 -13.47673 -13.26878 -13.18548 -12.98833 -12.68141 -12.55223 -12.52928 -12.28572 -12.25008 -12.01544 -11.75006 -11.65786 -11.34370 -10.99894 -10.88472 -10.39481 -10.01320 -9.90209 -9.19159 -5.08836 -0.26180 0.07484 1.28926 1.63140 1.76227 1.88562 1.93364 1.99137 2.10825 2.14155 2.19793 2.61700 3.16435 3.43860 3.51770 3.62858 3.67497 3.73573 3.82660 3.84698 4.03121 4.06568 4.12407 4.17571 4.22993 4.25061 4.26419 4.27862 4.48297 4.52012 4.62006 4.65166 4.74485 4.77826 4.86126 4.89806 4.97982 5.00991 5.05738 5.08402 5.22992 5.28803 5.31607 5.40017 5.77798 6.02227 6.28178 6.60947 6.73921 6.85347 7.31950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.303 6.303 3 C 0.216 3.784 4 C -0.312 4.312 5 C 0.211 3.789 6 O -0.314 6.314 7 C 0.012 3.988 8 C -0.205 4.205 9 C -0.060 4.060 10 O -0.553 6.553 11 Si 0.777 3.223 12 C 0.010 3.990 13 C -0.226 4.226 14 C 0.565 3.435 15 O -0.564 6.564 16 N -0.702 5.702 17 C 0.107 3.893 18 H 0.086 0.914 19 C -0.114 4.114 20 C -0.104 4.104 21 H 0.101 0.899 22 C -0.015 4.015 23 C 0.234 3.766 24 N -0.522 5.522 25 C -0.159 4.159 26 H 0.114 0.886 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.161 0.839 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.393 0.607 35 H -0.295 1.295 36 H -0.279 1.279 37 H 0.169 0.831 38 H 0.412 0.588 39 H 0.100 0.900 40 H 0.123 0.877 41 H 0.135 0.865 42 H 0.148 0.852 43 H 0.105 0.895 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.183 -0.678 -7.172 7.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.214 6.214 3 C 0.167 3.833 4 C -0.331 4.331 5 C 0.163 3.837 6 O -0.226 6.226 7 C -0.082 4.082 8 C -0.206 4.206 9 C -0.170 4.170 10 O -0.361 6.361 11 Si 0.681 3.319 12 C -0.008 4.008 13 C -0.230 4.230 14 C 0.354 3.646 15 O -0.443 6.443 16 N -0.354 5.354 17 C 0.002 3.998 18 H 0.104 0.896 19 C -0.151 4.151 20 C -0.123 4.123 21 H 0.119 0.881 22 C -0.054 4.054 23 C -0.082 4.082 24 N -0.201 5.201 25 C -0.198 4.198 26 H 0.132 0.868 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.179 0.821 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.136 0.864 33 H 0.114 0.886 34 H 0.243 0.757 35 H -0.223 1.223 36 H -0.206 1.206 37 H 0.186 0.814 38 H 0.250 0.750 39 H 0.118 0.882 40 H 0.142 0.858 41 H 0.152 0.848 42 H 0.165 0.835 43 H 0.123 0.877 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.314 -0.254 -4.739 4.756 hybrid contribution -1.531 0.493 0.402 1.658 sum -1.217 0.239 -4.336 4.510 Atomic orbital electron populations 1.23466 0.76597 1.05772 1.02556 1.86364 1.23122 1.25847 1.86025 1.18998 0.91243 0.84623 0.88421 1.21414 1.01990 0.90825 1.18908 1.18967 0.91044 0.84892 0.88802 1.86143 1.21068 1.28835 1.86560 1.23456 0.76315 1.05793 1.02603 1.19615 0.90879 0.96818 1.13299 1.25044 1.11214 0.91642 0.89051 1.86509 1.82670 1.50192 1.16692 0.94374 0.73545 0.81398 0.82564 1.20852 0.99712 0.88665 0.91573 1.19190 0.90757 0.94029 1.19052 1.17988 0.82732 0.88133 0.75743 1.90821 1.72402 1.30245 1.50872 1.45467 1.04741 1.10233 1.74993 1.21984 0.92449 0.87578 0.97819 0.89600 1.23341 0.91317 1.05210 0.95280 1.22602 0.91573 1.00497 0.97672 0.88120 1.19746 0.98313 1.03524 0.83822 1.30246 0.91143 0.91518 0.95324 1.81361 1.11726 1.11950 1.15029 1.23701 0.97229 1.01883 0.96941 0.86816 0.91316 0.90959 0.82124 0.91137 0.91363 0.86382 0.88586 0.75680 1.22316 1.20579 0.81430 0.75046 0.88187 0.85844 0.84757 0.83489 0.87691 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.30 -2.38 8.56 -68.69 -0.59 -2.97 16 3 C 0.22 1.21 6.70 22.82 0.15 1.36 16 4 C -0.31 -0.55 8.01 22.43 0.18 -0.37 16 5 C 0.21 0.59 6.67 22.60 0.15 0.74 16 6 O -0.31 -0.94 9.80 -90.42 -0.89 -1.83 16 7 C 0.01 -0.05 9.80 113.37 1.11 1.06 16 8 C -0.20 -0.12 5.27 -19.80 -0.10 -0.22 16 9 C -0.06 0.00 2.37 71.24 0.17 0.17 16 10 O -0.55 -0.29 12.88 -148.98 -1.92 -2.21 16 11 Si 0.78 -3.16 29.90 68.60 2.05 -1.11 16 12 C 0.01 -0.02 8.14 22.50 0.18 0.16 16 13 C -0.23 -0.85 5.89 -20.00 -0.12 -0.97 16 14 C 0.57 3.26 7.76 86.63 0.67 3.93 16 15 O -0.56 -8.29 14.75 16.87 0.25 -8.04 16 16 N -0.70 2.12 5.21 -443.14 -2.31 -0.19 16 17 C 0.11 -0.53 4.33 45.57 0.20 -0.33 16 18 H 0.09 0.01 7.46 -2.39 -0.02 -0.01 16 19 C -0.11 1.56 7.39 31.12 0.23 1.79 16 20 C -0.10 1.21 3.48 -10.27 -0.04 1.18 16 21 H 0.10 -1.18 8.13 -2.38 -0.02 -1.20 16 22 C -0.01 0.19 5.53 28.79 0.16 0.35 16 23 C 0.23 -0.18 15.43 89.43 1.38 1.20 16 24 N -0.52 -4.87 18.54 20.02 0.37 -4.50 16 25 C -0.16 0.90 7.44 31.18 0.23 1.13 16 26 H 0.11 -0.38 8.14 -2.38 -0.02 -0.40 16 27 H 0.07 -0.29 7.66 -2.39 -0.02 -0.30 16 28 H 0.07 -0.34 7.66 -2.39 -0.02 -0.36 16 29 H 0.16 -0.47 4.50 -2.91 -0.01 -0.48 16 30 H 0.07 -0.46 7.65 -2.38 -0.02 -0.48 16 31 H 0.07 -0.44 7.65 -2.39 -0.02 -0.46 16 32 H 0.12 -0.83 8.14 -2.39 -0.02 -0.85 16 33 H 0.10 0.32 7.82 -2.39 -0.02 0.30 16 34 H 0.39 -3.38 8.70 -74.06 -0.64 -4.02 16 35 H -0.30 -1.11 7.11 99.48 0.71 -0.40 16 36 H -0.28 -0.16 7.11 99.48 0.71 0.54 16 37 H 0.17 -1.65 3.42 -2.91 -0.01 -1.66 16 38 H 0.41 -4.04 6.72 -92.71 -0.62 -4.66 16 39 H 0.10 -1.63 8.14 -2.38 -0.02 -1.65 16 40 H 0.12 -2.09 8.10 -2.39 -0.02 -2.11 16 41 H 0.13 -2.24 7.88 -2.39 -0.02 -2.26 16 42 H 0.15 -2.75 8.14 -2.39 -0.02 -2.77 16 43 H 0.10 -0.78 7.92 -2.39 -0.02 -0.80 16 44 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 Total: 0.00 -35.10 369.82 2.48 -32.62 By element: Atomic # 1 Polarization: -23.90 SS G_CDS: -0.16 Total: -24.06 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 5.67 Total: 12.28 kcal Atomic # 7 Polarization: -2.75 SS G_CDS: -1.94 Total: -4.69 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -3.14 Total: -15.04 kcal Atomic # 14 Polarization: -3.16 SS G_CDS: 2.05 Total: -1.11 kcal Total: -35.10 2.48 -32.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_12297780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.219 kcal (2) G-P(sol) polarization free energy of solvation -35.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds