Wall clock time and date at job start Sun Mar 7 2021 06:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46838 * 33.39880 * 3 2 1 5 5 H 1.08998 * 112.84864 * 316.19485 * 4 3 2 6 6 C 1.53783 * 113.61068 * 185.00403 * 4 3 2 7 7 C 1.53782 * 87.07882 * 220.01946 * 6 4 3 8 8 H 1.08996 * 113.62151 * 140.06599 * 7 6 4 9 9 N 1.46503 * 113.61235 * 270.88558 * 7 6 4 10 10 C 1.34784 * 119.99858 * 203.47403 * 9 7 6 11 11 O 1.21587 * 120.00051 * 359.97438 * 10 9 7 12 12 C 1.47576 * 119.99666 * 179.97438 * 10 9 7 13 13 C 1.40199 * 119.83608 * 359.97438 * 12 10 9 14 14 C 1.36231 * 120.38058 * 180.02562 * 13 12 10 15 15 C 1.39878 * 119.95814 * 359.97438 * 14 13 12 16 16 C 1.40926 * 120.16602 * 359.97438 * 15 14 13 17 17 C 1.38645 * 119.49463 * 0.02562 * 16 15 14 18 18 N 1.37834 * 107.12239 * 180.02562 * 16 15 14 19 19 C 1.36565 * 109.86148 * 359.74000 * 18 16 15 20 20 C 1.34459 * 109.98441 * 0.44740 * 19 18 16 21 21 C 1.50699 * 126.48165 * 179.83323 * 20 19 18 22 22 O 1.42901 * 109.46830 * 104.68373 * 21 20 19 23 23 Si 1.86298 * 109.46950 * 344.68810 * 21 20 19 24 24 C 1.53781 * 87.17720 * 25.47169 * 7 6 4 25 25 H 1.09004 * 109.46526 * 273.39910 * 3 2 1 26 26 H 1.08994 * 109.47038 * 153.39941 * 3 2 1 27 27 H 1.08996 * 113.62039 * 105.47062 * 6 4 3 28 28 H 1.09002 * 113.61309 * 334.56424 * 6 4 3 29 29 H 0.97002 * 120.00307 * 23.46503 * 9 7 6 30 30 H 1.08006 * 119.80934 * 0.02562 * 13 12 10 31 31 H 1.08004 * 120.02091 * 179.97438 * 14 13 12 32 32 H 1.07994 * 120.16613 * 179.97438 * 17 16 15 33 33 H 0.97003 * 125.06625 * 179.97438 * 18 16 15 34 34 H 1.07999 * 125.00821 * 180.27317 * 19 18 16 35 35 H 1.08991 * 109.47351 * 224.68521 * 21 20 19 36 36 H 0.96708 * 114.00246 * 299.99864 * 22 21 20 37 37 H 1.48506 * 109.99834 * 180.02562 * 23 21 20 38 38 H 1.48502 * 110.00011 * 301.31529 * 23 21 20 39 39 H 1.08997 * 113.61232 * 89.07144 * 24 7 6 40 40 H 1.08998 * 113.61687 * 219.98215 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.2034 -0.7940 5 1 2.5765 -2.1212 -0.5662 6 6 4.6473 -1.3646 -0.7536 7 6 4.5675 -1.7471 -2.2409 8 1 5.3743 -1.3296 -2.8431 9 7 4.3714 -3.1810 -2.4684 10 6 4.7440 -3.7348 -3.6394 11 8 5.2424 -3.0442 -4.5071 12 6 4.5470 -5.1793 -3.8682 13 6 3.9724 -5.9725 -2.8650 14 6 3.7859 -7.3072 -3.0643 15 6 4.1682 -7.8927 -4.2757 16 6 4.7457 -7.1053 -5.2917 17 6 4.9319 -5.7477 -5.0805 18 7 5.0142 -7.9440 -6.3520 19 6 4.6361 -9.2192 -6.0422 20 6 4.1119 -9.2551 -4.8045 21 6 3.5742 -10.4706 -4.0942 22 8 4.5117 -10.8969 -3.1035 23 14 3.3061 -11.8420 -5.3263 24 6 3.2662 -0.9301 -2.3029 25 1 2.9713 -0.0601 1.0259 26 1 2.9709 0.9197 -0.4601 27 1 4.9838 -2.1781 -0.1110 28 1 5.1801 -0.4314 -0.5707 29 1 3.9735 -3.7320 -1.7762 30 1 3.6759 -5.5227 -1.9289 31 1 3.3431 -7.9128 -2.2873 32 1 5.3739 -5.1342 -5.8516 33 1 5.4152 -7.6700 -7.1917 34 1 4.7400 -10.0724 -6.6960 35 1 2.6272 -10.2222 -3.6152 36 1 5.3790 -11.1346 -3.4591 37 1 2.7753 -13.0463 -4.6383 38 1 2.3573 -11.4000 -6.3797 39 1 3.4220 0.1217 -2.5428 40 1 2.4884 -1.3931 -2.9101 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_12335838.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:06:41 Heat of formation + Delta-G solvation = 43.395956 kcal Electronic energy + Delta-G solvation = -24271.733842 eV Core-core repulsion = 20633.204436 eV Total energy + Delta-G solvation = -3638.529406 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.45936 -41.33184 -39.69699 -37.87484 -37.50351 -37.39849 -34.68048 -33.24076 -31.42966 -30.71983 -30.17545 -26.59981 -26.49809 -25.34900 -23.79532 -23.64771 -21.65427 -20.79026 -20.24464 -19.46098 -18.66761 -18.17643 -17.56531 -17.11561 -16.95108 -16.32010 -16.16425 -16.02162 -15.65183 -15.51754 -15.50217 -15.08937 -14.90308 -14.75418 -14.55560 -14.28515 -14.02427 -14.00528 -13.68623 -13.33026 -13.09718 -13.06956 -12.65449 -12.34106 -12.28840 -12.27238 -11.93127 -11.85898 -11.45058 -11.12394 -11.08349 -10.78583 -10.29371 -10.09438 -9.36514 -8.78865 -4.97523 -0.32632 0.36311 1.38840 1.42103 1.71560 1.83252 1.88356 1.90020 1.93051 2.05775 2.27328 2.85796 3.09719 3.54309 3.61150 3.63504 3.73431 3.74631 3.88976 3.91914 3.94734 3.99053 4.11763 4.30311 4.42986 4.48952 4.52497 4.58519 4.69744 4.76883 4.79104 4.88768 4.94601 4.96121 4.98291 5.12501 5.19746 5.21944 5.28958 5.40764 5.49401 5.61455 5.67190 5.97782 6.47380 6.54941 6.68164 6.91160 7.15080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C 0.233 3.767 3 C -0.014 4.014 4 C -0.101 4.101 5 H 0.095 0.905 6 C -0.115 4.115 7 C 0.104 3.896 8 H 0.088 0.912 9 N -0.696 5.696 10 C 0.563 3.437 11 O -0.581 6.581 12 C -0.139 4.139 13 C -0.107 4.107 14 C -0.088 4.088 15 C -0.083 4.083 16 C 0.066 3.934 17 C -0.066 4.066 18 N -0.577 5.577 19 C 0.097 3.903 20 C -0.236 4.236 21 C -0.039 4.039 22 O -0.561 6.561 23 Si 0.796 3.204 24 C -0.155 4.155 25 H 0.146 0.854 26 H 0.137 0.863 27 H 0.091 0.909 28 H 0.126 0.874 29 H 0.413 0.587 30 H 0.151 0.849 31 H 0.136 0.864 32 H 0.129 0.871 33 H 0.435 0.565 34 H 0.219 0.781 35 H 0.095 0.905 36 H 0.393 0.607 37 H -0.306 1.306 38 H -0.286 1.286 39 H 0.109 0.891 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.030 -2.885 0.227 7.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.198 5.198 2 C -0.083 4.083 3 C -0.054 4.054 4 C -0.121 4.121 5 H 0.113 0.887 6 C -0.153 4.153 7 C -0.001 4.001 8 H 0.106 0.894 9 N -0.348 5.348 10 C 0.352 3.648 11 O -0.462 6.462 12 C -0.143 4.143 13 C -0.127 4.127 14 C -0.106 4.106 15 C -0.088 4.088 16 C -0.041 4.041 17 C -0.088 4.088 18 N -0.180 5.180 19 C -0.033 4.033 20 C -0.243 4.243 21 C -0.149 4.149 22 O -0.369 6.369 23 Si 0.701 3.299 24 C -0.194 4.194 25 H 0.163 0.837 26 H 0.155 0.845 27 H 0.110 0.890 28 H 0.145 0.855 29 H 0.252 0.748 30 H 0.169 0.831 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.276 0.724 34 H 0.236 0.764 35 H 0.113 0.887 36 H 0.243 0.757 37 H -0.234 1.234 38 H -0.213 1.213 39 H 0.127 0.873 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.668 -2.754 -0.467 5.440 hybrid contribution -0.292 0.441 0.049 0.531 sum 4.376 -2.313 -0.418 4.968 Atomic orbital electron populations 1.81312 1.15913 1.11025 1.11534 1.30155 0.96188 0.91074 0.90852 1.19730 0.78186 1.01564 1.05889 1.22595 0.97366 0.98073 0.94080 0.88682 1.23338 0.94359 1.04628 0.92940 1.22008 0.98610 0.79865 0.99667 0.89424 1.45516 1.62797 1.09843 1.16633 1.18340 0.76966 0.87362 0.82118 1.90761 1.46118 1.64308 1.45036 1.19486 1.06134 0.92662 0.96003 1.20888 0.99487 0.93456 0.98873 1.20399 0.99547 0.94678 0.95987 1.19587 1.01015 0.93728 0.94462 1.18126 1.04013 0.91924 0.90027 1.20148 0.99789 0.91436 0.97408 1.41823 1.54042 1.06545 1.15629 1.22365 0.96795 0.87734 0.96368 1.20857 1.12774 0.93981 0.96690 1.24534 0.93904 0.98906 0.97528 1.86462 1.26978 1.87644 1.35803 0.94071 0.86416 0.73521 0.75861 1.23704 0.97183 1.01776 0.96709 0.83683 0.84508 0.89017 0.85535 0.74830 0.83138 0.84654 0.85284 0.72449 0.76432 0.88732 0.75687 1.23430 1.21317 0.87264 0.93319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -5.20 18.54 20.01 0.37 -4.83 16 2 C 0.23 0.03 15.42 89.45 1.38 1.40 16 3 C -0.01 0.17 5.54 28.79 0.16 0.33 16 4 C -0.10 1.02 3.51 -10.17 -0.04 0.99 16 5 H 0.09 -0.87 8.12 -2.39 -0.02 -0.89 16 6 C -0.11 1.35 7.38 31.12 0.23 1.58 16 7 C 0.10 -0.37 4.30 45.52 0.20 -0.18 16 8 H 0.09 0.07 7.50 -2.39 -0.02 0.05 16 9 N -0.70 0.89 5.21 -443.14 -2.31 -1.42 16 10 C 0.56 3.62 7.76 86.71 0.67 4.29 16 11 O -0.58 -8.31 15.93 -3.99 -0.06 -8.38 16 12 C -0.14 -0.67 5.87 -20.08 -0.12 -0.79 16 13 C -0.11 -0.09 9.46 22.28 0.21 0.12 16 14 C -0.09 -0.24 10.03 22.20 0.22 -0.02 16 15 C -0.08 -0.32 6.35 -20.14 -0.13 -0.45 16 16 C 0.07 0.21 7.26 38.95 0.28 0.49 16 17 C -0.07 -0.36 9.61 22.63 0.22 -0.15 16 18 N -0.58 2.09 6.07 -187.71 -1.14 0.96 16 19 C 0.10 -0.56 10.43 83.09 0.87 0.30 16 20 C -0.24 0.12 5.57 -18.64 -0.10 0.02 16 21 C -0.04 0.05 3.06 71.24 0.22 0.27 16 22 O -0.56 0.09 12.88 -148.98 -1.92 -1.83 16 23 Si 0.80 -3.83 30.76 68.60 2.11 -1.72 16 24 C -0.16 0.75 7.45 31.21 0.23 0.98 16 25 H 0.15 -2.50 8.14 -2.39 -0.02 -2.51 16 26 H 0.14 -2.18 7.85 -2.39 -0.02 -2.20 16 27 H 0.09 -1.19 8.14 -2.39 -0.02 -1.21 16 28 H 0.13 -1.96 8.10 -2.39 -0.02 -1.98 16 29 H 0.41 -2.76 6.69 -92.71 -0.62 -3.38 16 30 H 0.15 -0.87 6.36 -2.91 -0.02 -0.89 16 31 H 0.14 0.10 8.06 -2.91 -0.02 0.08 16 32 H 0.13 0.75 7.62 -2.91 -0.02 0.73 16 33 H 0.44 -4.05 8.96 -92.71 -0.83 -4.88 16 34 H 0.22 -3.25 6.35 -2.91 -0.02 -3.27 16 35 H 0.10 0.13 7.96 -2.39 -0.02 0.11 16 36 H 0.39 -3.38 8.70 -74.05 -0.64 -4.03 16 37 H -0.31 -1.18 7.11 99.48 0.71 -0.47 16 38 H -0.29 -0.06 7.11 99.48 0.71 0.65 16 39 H 0.11 -0.79 7.90 -2.39 -0.02 -0.81 16 40 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 Total: 0.00 -33.52 347.19 0.62 -32.90 By element: Atomic # 1 Polarization: -23.94 SS G_CDS: -0.94 Total: -24.88 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 4.50 Total: 9.19 kcal Atomic # 7 Polarization: -2.22 SS G_CDS: -3.08 Total: -5.30 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -1.98 Total: -10.20 kcal Atomic # 14 Polarization: -3.83 SS G_CDS: 2.11 Total: -1.72 kcal Total: -33.52 0.62 -32.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_12335838.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.300 kcal (2) G-P(sol) polarization free energy of solvation -33.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds