Wall clock time and date at job start Sun Mar 7 2021 06:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34853 * 125.89486 * 2 1 4 4 C 1.40943 * 107.46518 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.26632 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47590 * 254.98025 * 5 4 3 7 7 Si 1.86305 * 109.47027 * 14.98216 * 5 4 3 8 8 C 1.34848 * 107.46445 * 359.76170 * 4 3 2 9 9 C 1.50705 * 125.89714 * 180.26553 * 8 4 3 10 10 N 1.36561 * 125.90260 * 179.97438 * 2 1 3 11 11 C 1.40220 * 125.66675 * 0.02562 * 10 2 1 12 12 C 1.38550 * 119.99617 * 294.74784 * 11 10 2 13 13 C 1.39503 * 119.78779 * 180.28211 * 12 11 10 14 14 C 1.47862 * 120.11489 * 180.02562 * 13 12 11 15 15 O 1.21546 * 119.99722 * 359.97335 * 14 13 12 16 16 N 1.34778 * 119.99747 * 179.97438 * 14 13 12 17 17 C 1.46495 * 119.99614 * 179.97438 * 16 14 13 18 18 H 1.09008 * 112.84900 * 23.81246 * 17 16 14 19 19 C 1.53782 * 113.61330 * 155.00226 * 17 16 14 20 20 C 1.53778 * 87.07992 * 89.12073 * 19 17 16 21 21 H 1.09010 * 113.61417 * 270.88577 * 20 19 17 22 22 C 1.53000 * 113.61832 * 140.06798 * 20 19 17 23 23 C 1.47195 * 109.47274 * 174.99857 * 22 20 19 24 24 N 9.14992 * 157.77518 * 179.97438 * 12 1 2 25 25 C 1.53773 * 113.61825 * 252.50227 * 17 16 14 26 26 C 1.39575 * 119.77070 * 359.97438 * 13 12 11 27 27 C 1.38020 * 119.98875 * 0.02562 * 26 13 12 28 28 C 1.38216 * 120.21576 * 359.97438 * 27 26 13 29 29 H 1.08994 * 109.47129 * 270.03746 * 1 2 3 30 30 H 1.08998 * 109.47420 * 30.04043 * 1 2 3 31 31 H 1.09002 * 109.46610 * 150.03701 * 1 2 3 32 32 H 1.07999 * 126.26896 * 359.94684 * 3 2 1 33 33 H 1.09004 * 109.47436 * 134.97728 * 5 4 3 34 34 H 0.96699 * 114.00071 * 179.97438 * 6 5 4 35 35 H 1.48506 * 109.99842 * 178.68018 * 7 5 4 36 36 H 1.48501 * 110.00069 * 299.99585 * 7 5 4 37 37 H 1.09000 * 109.46871 * 270.14320 * 9 8 4 38 38 H 1.08998 * 109.47009 * 30.14004 * 9 8 4 39 39 H 1.09001 * 109.47218 * 150.14433 * 9 8 4 40 40 H 1.07999 * 120.10736 * 0.25889 * 12 11 10 41 41 H 0.96994 * 119.99820 * 0.02562 * 16 14 13 42 42 H 1.09003 * 113.61679 * 203.66467 * 19 17 16 43 43 H 1.08996 * 113.61491 * 334.56944 * 19 17 16 44 44 H 1.09002 * 109.46741 * 294.99816 * 22 20 19 45 45 H 1.08999 * 109.47075 * 54.99531 * 22 20 19 46 46 H 1.09000 * 113.61414 * 25.43285 * 25 17 16 47 47 H 1.09004 * 113.61963 * 156.33942 * 25 17 16 48 48 H 1.08005 * 120.00428 * 180.02562 * 26 13 12 49 49 H 1.08005 * 119.89342 * 180.02562 * 27 26 13 50 50 H 1.08003 * 119.88896 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2977 1.0924 0.0000 4 6 3.6348 0.6469 0.0006 5 6 4.8647 1.5178 0.0014 6 8 5.4559 1.5084 -1.2996 7 14 4.3906 3.2613 0.4555 8 6 3.6121 -0.7014 0.0063 9 6 4.8179 -1.6055 0.0146 10 7 2.3078 -1.1062 0.0005 11 6 1.8645 -2.4364 0.0006 12 6 1.1686 -2.9346 1.0901 13 6 0.7347 -4.2604 1.0881 14 6 -0.0091 -4.7993 2.2468 15 8 -0.2430 -4.0870 3.2035 16 7 -0.4276 -6.0805 2.2422 17 6 -1.1641 -6.6146 3.3904 18 1 -1.6635 -5.8388 3.9710 19 6 -2.0742 -7.8035 3.0396 20 6 -0.8660 -8.7111 3.3247 21 1 -0.2364 -8.8869 2.4523 22 6 -1.2288 -10.0001 4.0650 23 6 -0.0334 -10.8507 4.1838 24 7 0.8884 -11.5072 4.2764 25 6 -0.3448 -7.5953 4.2457 26 6 1.0042 -5.0761 -0.0119 27 6 1.6982 -4.5702 -1.0924 28 6 2.1279 -3.2565 -1.0898 29 1 -0.3633 0.0007 1.0276 30 1 -0.3634 0.8896 -0.5144 31 1 -0.3632 -0.8904 -0.5133 32 1 1.9669 2.1205 -0.0008 33 1 5.5807 1.1349 0.7286 34 1 6.2538 2.0497 -1.3728 35 1 5.5993 4.1234 0.4909 36 1 3.4148 3.7950 -0.5285 37 1 5.1138 -1.8257 -1.0111 38 1 5.6398 -1.1101 0.5315 39 1 4.5720 -2.5343 0.5293 40 1 0.9630 -2.2986 1.9385 41 1 -0.2406 -6.6490 1.4789 42 1 -2.8993 -7.9428 3.7381 43 1 -2.3936 -7.8162 1.9976 44 1 -1.6008 -9.7552 5.0598 45 1 -2.0004 -10.5331 3.5095 46 1 0.7320 -7.4401 4.1773 47 1 -0.6971 -7.6778 5.2739 48 1 0.6697 -6.1030 -0.0177 49 1 1.9055 -5.2027 -1.9429 50 1 2.6702 -2.8660 -1.9383 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_12335854.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:06:48 Heat of formation + Delta-G solvation = 66.411638 kcal Electronic energy + Delta-G solvation = -31836.594857 eV Core-core repulsion = 27604.224489 eV Total energy + Delta-G solvation = -4232.370368 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.90687 -41.57463 -40.20390 -39.08264 -37.79857 -37.47675 -35.04871 -34.17361 -33.74938 -32.40016 -31.12718 -30.31875 -30.16064 -27.26538 -26.59034 -25.74488 -24.78560 -23.91652 -23.62390 -22.05457 -21.06672 -20.33315 -20.11220 -18.78988 -18.47527 -18.36552 -17.54616 -17.37252 -17.09844 -16.63777 -16.20521 -16.04396 -15.85537 -15.70470 -15.56007 -15.29657 -15.01707 -14.99084 -14.76113 -14.44230 -14.24385 -14.13955 -14.03112 -13.86127 -13.71976 -13.64308 -13.50777 -13.32229 -13.23281 -13.21442 -13.06173 -12.94402 -12.58825 -12.43815 -12.42420 -12.33583 -11.91222 -11.85261 -11.43849 -11.19385 -11.08807 -10.45788 -10.33455 -10.29720 -10.02992 -9.54912 -8.86253 -4.86379 -0.44474 -0.05613 1.06934 1.38848 1.59111 1.63862 1.71472 1.73750 1.85510 1.90515 2.01416 2.05063 2.57917 3.10952 3.46920 3.56189 3.60177 3.67023 3.68537 3.73929 3.88073 3.91595 3.94003 3.96286 4.00991 4.11255 4.17999 4.25119 4.37875 4.42137 4.44536 4.53338 4.61802 4.65625 4.67808 4.70348 4.72593 4.78832 4.88272 4.93682 4.95869 4.98841 4.99599 5.01278 5.06492 5.13187 5.13699 5.17023 5.21040 5.28223 5.32802 5.52057 5.65524 5.93686 6.11373 6.41339 6.45318 6.69539 6.69987 7.09176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.015 3.985 3 C -0.201 4.201 4 C -0.168 4.168 5 C -0.046 4.046 6 O -0.559 6.559 7 Si 0.764 3.236 8 C 0.037 3.963 9 C -0.078 4.078 10 N -0.405 5.405 11 C 0.097 3.903 12 C -0.062 4.062 13 C -0.132 4.132 14 C 0.560 3.440 15 O -0.576 6.576 16 N -0.692 5.692 17 C 0.103 3.897 18 H 0.087 0.913 19 C -0.115 4.115 20 C -0.100 4.100 21 H 0.099 0.901 22 C -0.016 4.016 23 C 0.233 3.767 24 N -0.519 5.519 25 C -0.156 4.156 26 C -0.064 4.064 27 C -0.101 4.101 28 C -0.086 4.086 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.147 0.853 33 H 0.083 0.917 34 H 0.389 0.611 35 H -0.285 1.285 36 H -0.302 1.302 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.121 0.879 41 H 0.416 0.584 42 H 0.124 0.876 43 H 0.094 0.906 44 H 0.135 0.865 45 H 0.145 0.855 46 H 0.050 0.950 47 H 0.107 0.893 48 H 0.170 0.830 49 H 0.173 0.827 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.454 -4.274 -1.795 7.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 C -0.225 4.225 4 C -0.175 4.175 5 C -0.155 4.155 6 O -0.368 6.368 7 Si 0.670 3.330 8 C -0.072 4.072 9 C -0.135 4.135 10 N -0.080 5.080 11 C 0.008 3.992 12 C -0.082 4.082 13 C -0.136 4.136 14 C 0.348 3.652 15 O -0.456 6.456 16 N -0.344 5.344 17 C -0.002 4.002 18 H 0.105 0.895 19 C -0.153 4.153 20 C -0.120 4.120 21 H 0.117 0.883 22 C -0.055 4.055 23 C -0.083 4.083 24 N -0.197 5.197 25 C -0.194 4.194 26 C -0.082 4.082 27 C -0.119 4.119 28 C -0.105 4.105 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.164 0.836 33 H 0.100 0.900 34 H 0.239 0.761 35 H -0.212 1.212 36 H -0.229 1.229 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.139 0.861 41 H 0.254 0.746 42 H 0.142 0.858 43 H 0.112 0.888 44 H 0.153 0.847 45 H 0.163 0.837 46 H 0.069 0.931 47 H 0.125 0.875 48 H 0.187 0.813 49 H 0.191 0.809 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.876 -4.658 -1.324 6.872 hybrid contribution 1.072 0.427 -1.014 1.537 sum -3.803 -4.231 -2.339 6.151 Atomic orbital electron populations 1.20366 0.86553 1.03716 1.03278 1.20752 0.94488 0.84928 1.09126 1.20762 0.92180 0.98173 1.11344 1.18753 0.93799 0.92233 1.12673 1.24186 0.94472 1.09792 0.87090 1.86582 1.46522 1.72445 1.31249 0.93922 0.78618 0.72293 0.88216 1.20584 0.84582 0.94328 1.07723 1.20316 0.92857 0.97305 1.03039 1.41477 1.05560 1.03347 1.57657 1.17655 1.02169 0.83563 0.95857 1.21141 0.95537 0.95089 0.96447 1.19765 1.03274 0.94356 0.96229 1.18366 0.78427 0.82344 0.86046 1.90795 1.58129 1.59591 1.37126 1.45463 1.56463 1.10942 1.21519 1.22015 0.94278 0.96095 0.87804 0.89479 1.23343 0.96411 0.90764 1.04783 1.22559 0.98956 0.91666 0.98818 0.88250 1.19730 0.88254 0.91770 1.05753 1.30118 0.94586 0.92530 0.91029 1.81302 1.14162 1.12922 1.11358 1.23659 0.99846 0.95805 1.00118 1.21786 0.94844 1.00601 0.90988 1.21423 0.96658 0.94159 0.99695 1.21627 0.98105 0.94644 0.96171 0.90399 0.88918 0.91856 0.83562 0.89950 0.76121 1.21197 1.22916 0.90562 0.89373 0.91682 0.86145 0.74559 0.85803 0.88777 0.84703 0.83702 0.93061 0.87493 0.81275 0.80949 0.84555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.20 9.94 71.24 0.71 0.51 16 2 C 0.02 0.11 6.81 41.05 0.28 0.39 16 3 C -0.20 -1.66 9.27 22.15 0.21 -1.45 16 4 C -0.17 -1.39 5.39 -19.98 -0.11 -1.50 16 5 C -0.05 -0.20 2.60 71.23 0.18 -0.01 16 6 O -0.56 -3.36 12.86 -148.98 -1.92 -5.27 16 7 Si 0.76 2.18 30.84 68.60 2.12 4.30 16 8 C 0.04 0.28 6.81 41.04 0.28 0.56 16 9 C -0.08 -0.20 9.73 71.24 0.69 0.50 16 10 N -0.41 -2.78 2.79 -320.36 -0.89 -3.68 16 11 C 0.10 0.33 4.65 38.04 0.18 0.51 16 12 C -0.06 -0.26 9.28 22.65 0.21 -0.05 16 13 C -0.13 0.01 5.87 -20.10 -0.12 -0.10 16 14 C 0.56 1.39 7.77 86.79 0.67 2.06 16 15 O -0.58 -6.84 15.94 -3.86 -0.06 -6.91 16 16 N -0.69 3.93 5.21 -442.91 -2.31 1.62 16 17 C 0.10 -0.69 4.32 45.52 0.20 -0.49 16 18 H 0.09 -0.14 7.46 -2.38 -0.02 -0.16 16 19 C -0.12 1.68 7.39 31.12 0.23 1.91 16 20 C -0.10 1.31 3.49 -10.27 -0.04 1.27 16 21 H 0.10 -1.29 8.12 -2.38 -0.02 -1.31 16 22 C -0.02 0.22 5.54 28.79 0.16 0.38 16 23 C 0.23 -0.47 15.41 89.45 1.38 0.91 16 24 N -0.52 -4.15 18.53 20.00 0.37 -3.78 16 25 C -0.16 1.18 7.43 31.12 0.23 1.41 16 26 C -0.06 0.47 9.54 22.54 0.21 0.68 16 27 C -0.10 0.72 10.02 22.21 0.22 0.94 16 28 C -0.09 0.12 9.73 22.44 0.22 0.34 16 29 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.06 0.14 7.83 -2.39 -0.02 0.12 16 32 H 0.15 0.90 6.55 -2.91 -0.02 0.88 16 33 H 0.08 0.04 7.49 -2.38 -0.02 0.02 16 34 H 0.39 -0.92 8.74 -74.06 -0.65 -1.57 16 35 H -0.29 -1.62 7.11 99.48 0.71 -0.91 16 36 H -0.30 -3.09 7.06 99.48 0.70 -2.39 16 37 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.09 0.07 7.50 -2.39 -0.02 0.05 16 39 H 0.06 0.11 7.83 -2.39 -0.02 0.09 16 40 H 0.12 1.02 7.65 -2.91 -0.02 1.00 16 41 H 0.42 -5.15 6.73 -92.71 -0.62 -5.77 16 42 H 0.12 -2.17 8.10 -2.39 -0.02 -2.19 16 43 H 0.09 -1.53 8.14 -2.39 -0.02 -1.55 16 44 H 0.14 -2.37 7.85 -2.39 -0.02 -2.39 16 45 H 0.15 -2.79 8.14 -2.39 -0.02 -2.81 16 46 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 47 H 0.11 -0.99 7.90 -2.38 -0.02 -1.01 16 48 H 0.17 -2.57 6.40 -2.91 -0.02 -2.59 16 49 H 0.17 -2.28 8.06 -2.91 -0.02 -2.31 16 50 H 0.14 -0.24 8.06 -2.91 -0.02 -0.27 16 Total: 0.00 -33.02 422.46 3.06 -29.97 By element: Atomic # 1 Polarization: -24.76 SS G_CDS: -0.25 Total: -25.02 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 6.00 Total: 8.76 kcal Atomic # 7 Polarization: -3.00 SS G_CDS: -2.83 Total: -5.83 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -1.98 Total: -12.18 kcal Atomic # 14 Polarization: 2.18 SS G_CDS: 2.12 Total: 4.30 kcal Total: -33.02 3.06 -29.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_12335854.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.380 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds