Wall clock time and date at job start Sun Mar 7 2021 06:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35656 * 117.00128 * 2 1 4 4 C 1.40138 * 120.14872 * 180.02562 * 3 2 1 5 5 C 1.47533 * 120.19220 * 0.02562 * 4 3 2 6 6 O 1.21589 * 119.99944 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99871 * 180.02562 * 5 4 3 8 8 C 1.46503 * 119.99784 * 179.97438 * 7 5 4 9 9 H 1.08997 * 112.85279 * 23.80346 * 8 7 5 10 10 C 1.53787 * 113.61181 * 154.99519 * 8 7 5 11 11 C 1.53784 * 87.07923 * 89.11654 * 10 8 7 12 12 H 1.09000 * 113.61578 * 270.88484 * 11 10 8 13 13 C 1.52997 * 113.61330 * 139.97966 * 11 10 8 14 14 C 1.47203 * 109.46999 * 174.99846 * 13 11 10 15 15 N 9.61490 * 158.43778 * 93.48671 * 2 1 3 16 16 C 1.53778 * 113.61472 * 252.49040 * 8 7 5 17 17 C 1.39709 * 119.61694 * 180.27760 * 4 3 2 18 18 C 1.37795 * 119.90292 * 359.51286 * 17 4 3 19 19 C 1.50698 * 119.84411 * 180.21295 * 18 17 4 20 20 O 1.42897 * 109.47414 * 300.27518 * 19 18 17 21 21 Si 1.86305 * 109.46750 * 180.28017 * 19 18 17 22 22 C 1.38542 * 120.30320 * 0.48681 * 18 17 4 23 23 C 1.38063 * 120.38935 * 359.75010 * 22 18 17 24 24 H 1.08998 * 109.46929 * 59.99507 * 1 2 3 25 25 H 1.08992 * 109.47398 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47074 * 299.99933 * 1 2 3 27 27 H 0.96997 * 120.00437 * 359.97438 * 7 5 4 28 28 H 1.09004 * 113.61202 * 203.66406 * 10 8 7 29 29 H 1.08994 * 113.61447 * 334.56838 * 10 8 7 30 30 H 1.09004 * 109.47170 * 294.99762 * 13 11 10 31 31 H 1.08995 * 109.47328 * 55.00254 * 13 11 10 32 32 H 1.08999 * 113.61111 * 25.43782 * 16 8 7 33 33 H 1.08999 * 113.61280 * 156.25165 * 16 8 7 34 34 H 1.07999 * 120.04678 * 179.72699 * 17 4 3 35 35 H 1.08997 * 109.47707 * 60.28027 * 19 18 17 36 36 H 0.96707 * 114.00177 * 300.01008 * 20 19 18 37 37 H 1.48500 * 109.99849 * 179.97438 * 21 19 18 38 38 H 1.48500 * 109.99912 * 301.31652 * 21 19 18 39 39 H 1.07996 * 119.80751 * 179.71488 * 22 18 17 40 40 H 1.07999 * 119.95561 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4442 1.2856 -0.0005 5 6 4.2550 0.0531 -0.0017 6 8 3.7094 -1.0335 -0.0017 7 7 5.6005 0.1316 -0.0017 8 6 6.4056 -1.0923 -0.0022 9 1 5.8705 -1.9508 -0.4080 10 6 7.8110 -0.9048 -0.5978 11 6 8.2770 -0.5354 0.8204 12 1 8.1895 0.5275 1.0458 13 6 9.6472 -1.1106 1.1846 14 6 10.0558 -0.6058 2.5056 15 7 10.3710 -0.2149 3.5270 16 6 7.0984 -1.3746 1.3413 17 6 4.0669 2.5363 0.0053 18 6 3.3038 3.6836 0.0015 19 6 3.9769 5.0319 0.0030 20 8 4.7929 5.1557 1.1695 21 14 2.6827 6.3720 0.0055 22 6 1.9207 3.6033 0.0019 23 6 1.2925 2.3739 0.0011 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 6.0357 0.9985 -0.0013 28 1 8.2517 -1.8274 -0.9758 29 1 7.8779 -0.0806 -1.3079 30 1 9.5884 -2.1986 1.2137 31 1 10.3795 -0.8061 0.4369 32 1 6.5899 -0.9296 2.1966 33 1 7.3429 -2.4257 1.4941 34 1 5.1448 2.6036 0.0094 35 1 4.5985 5.1288 -0.8871 36 1 4.3048 5.0794 2.0009 37 1 3.3336 7.7067 0.0076 38 1 1.8075 6.2351 -1.1864 39 1 1.3305 4.5077 0.0036 40 1 0.2139 2.3195 0.0019 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_12496546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:07:10 Heat of formation + Delta-G solvation = -20.005873 kcal Electronic energy + Delta-G solvation = -24291.453716 eV Core-core repulsion = 20653.371001 eV Total energy + Delta-G solvation = -3638.082715 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.85647 -40.84044 -39.28935 -39.17267 -37.41645 -37.10710 -34.70243 -32.67611 -31.82858 -30.82971 -28.52101 -26.59974 -26.15100 -25.65397 -24.12371 -22.62403 -21.59207 -20.27138 -19.46611 -18.67889 -18.27469 -18.06870 -17.17595 -16.88513 -16.72760 -16.22784 -16.04654 -15.98016 -15.83949 -15.69876 -15.45081 -14.91916 -14.55825 -14.52926 -14.31107 -14.01941 -13.73435 -13.60954 -13.42831 -13.29376 -13.10752 -13.05680 -12.43913 -12.32429 -12.10287 -12.04941 -11.84888 -11.78975 -11.43348 -11.09695 -11.00629 -10.39885 -10.26863 -9.97855 -9.28461 -4.97957 -0.27004 0.21119 1.33620 1.64189 1.77178 1.82835 1.87886 1.99342 2.10563 2.26922 2.67833 3.09575 3.48114 3.53825 3.58649 3.67186 3.73547 3.75955 3.93268 3.97895 4.00585 4.15611 4.30408 4.36037 4.39871 4.43056 4.55883 4.64728 4.70335 4.74645 4.78610 4.88244 4.90763 4.95275 4.97955 5.09919 5.13982 5.20929 5.27066 5.30157 5.55867 5.68307 6.30058 6.52713 6.68723 6.78642 7.23042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.313 6.313 3 C 0.171 3.829 4 C -0.197 4.197 5 C 0.558 3.442 6 O -0.563 6.563 7 N -0.701 5.701 8 C 0.105 3.895 9 H 0.085 0.915 10 C -0.116 4.116 11 C -0.100 4.100 12 H 0.094 0.906 13 C -0.013 4.013 14 C 0.233 3.767 15 N -0.518 5.518 16 C -0.154 4.154 17 C -0.017 4.017 18 C -0.168 4.168 19 C -0.064 4.064 20 O -0.555 6.555 21 Si 0.768 3.232 22 C -0.043 4.043 23 C -0.212 4.212 24 H 0.072 0.928 25 H 0.107 0.893 26 H 0.074 0.926 27 H 0.410 0.590 28 H 0.126 0.874 29 H 0.089 0.911 30 H 0.137 0.863 31 H 0.145 0.855 32 H 0.049 0.951 33 H 0.109 0.891 34 H 0.150 0.850 35 H 0.114 0.886 36 H 0.395 0.605 37 H -0.302 1.302 38 H -0.282 1.282 39 H 0.157 0.843 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.513 1.812 -3.710 4.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.225 6.225 3 C 0.122 3.878 4 C -0.201 4.201 5 C 0.346 3.654 6 O -0.443 6.443 7 N -0.354 5.354 8 C 0.000 4.000 9 H 0.103 0.897 10 C -0.154 4.154 11 C -0.120 4.120 12 H 0.112 0.888 13 C -0.053 4.053 14 C -0.084 4.084 15 N -0.196 5.196 16 C -0.192 4.192 17 C -0.035 4.035 18 C -0.168 4.168 19 C -0.174 4.174 20 O -0.363 6.363 21 Si 0.675 3.325 22 C -0.061 4.061 23 C -0.231 4.231 24 H 0.090 0.910 25 H 0.126 0.874 26 H 0.093 0.907 27 H 0.248 0.752 28 H 0.144 0.856 29 H 0.107 0.893 30 H 0.155 0.845 31 H 0.162 0.838 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.167 0.833 35 H 0.131 0.869 36 H 0.245 0.755 37 H -0.231 1.231 38 H -0.208 1.208 39 H 0.174 0.826 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.211 2.149 -3.036 4.327 hybrid contribution 0.064 -0.046 -0.434 0.441 sum -2.147 2.103 -3.470 4.590 Atomic orbital electron populations 1.23447 0.76529 1.05486 1.02844 1.86335 1.23196 1.26382 1.86556 1.19419 0.91370 0.85550 0.91450 1.19435 0.91191 0.94067 1.15438 1.18278 0.82748 0.88550 0.75776 1.90808 1.72484 1.30271 1.50720 1.45519 1.04921 1.10142 1.74814 1.21967 0.92287 0.87628 0.98160 0.89659 1.23347 0.91809 1.04863 0.95390 1.22526 0.91911 1.00203 0.97341 0.88754 1.19713 0.97852 1.03240 0.84482 1.30221 0.91275 0.91678 0.95179 1.81405 1.11592 1.11820 1.14780 1.23642 0.96887 1.01968 0.96716 1.21090 1.00695 0.89196 0.92566 1.20250 0.93834 0.96005 1.06750 1.25046 1.01998 0.99005 0.91359 1.86472 1.38144 1.95330 1.16314 0.93818 0.78056 0.74058 0.86598 1.21280 0.93722 0.97893 0.93213 1.21478 1.01788 0.90921 1.08885 0.90972 0.87434 0.90719 0.75202 0.85618 0.89284 0.84492 0.83763 0.93240 0.87311 0.83269 0.86893 0.75505 1.23050 1.20832 0.82614 0.82013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.31 -2.58 8.57 -68.80 -0.59 -3.17 16 3 C 0.17 0.86 6.70 22.84 0.15 1.01 16 4 C -0.20 -0.93 5.89 -20.01 -0.12 -1.05 16 5 C 0.56 4.47 7.76 86.69 0.67 5.14 16 6 O -0.56 -9.41 14.76 16.92 0.25 -9.16 16 7 N -0.70 -0.03 5.21 -443.20 -2.31 -2.34 16 8 C 0.10 -0.24 4.32 45.52 0.20 -0.04 16 9 H 0.09 0.22 7.46 -2.39 -0.02 0.20 16 10 C -0.12 1.22 7.39 31.12 0.23 1.45 16 11 C -0.10 0.92 3.49 -10.27 -0.04 0.89 16 12 H 0.09 -0.77 8.12 -2.39 -0.02 -0.79 16 13 C -0.01 0.15 5.54 28.79 0.16 0.31 16 14 C 0.23 0.10 15.42 89.42 1.38 1.48 16 15 N -0.52 -5.25 18.55 20.03 0.37 -4.88 16 16 C -0.15 0.61 7.43 31.12 0.23 0.85 16 17 C -0.02 0.02 9.08 22.52 0.20 0.22 16 18 C -0.17 0.51 5.39 -19.90 -0.11 0.40 16 19 C -0.06 0.28 2.82 71.24 0.20 0.48 16 20 O -0.55 1.88 12.76 -148.98 -1.90 -0.03 16 21 Si 0.77 -3.96 29.77 68.60 2.04 -1.92 16 22 C -0.04 0.18 8.66 22.30 0.19 0.37 16 23 C -0.21 0.35 9.03 22.34 0.20 0.55 16 24 H 0.07 -0.36 7.66 -2.39 -0.02 -0.37 16 25 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 26 H 0.07 -0.39 7.66 -2.39 -0.02 -0.41 16 27 H 0.41 -2.16 6.73 -92.71 -0.62 -2.78 16 28 H 0.13 -1.80 8.10 -2.39 -0.02 -1.82 16 29 H 0.09 -1.02 8.14 -2.39 -0.02 -1.04 16 30 H 0.14 -2.10 7.85 -2.38 -0.02 -2.12 16 31 H 0.14 -2.38 8.14 -2.39 -0.02 -2.40 16 32 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.11 -0.70 7.90 -2.39 -0.02 -0.72 16 34 H 0.15 -0.76 6.40 -2.91 -0.02 -0.78 16 35 H 0.11 -0.44 7.96 -2.39 -0.02 -0.46 16 36 H 0.39 -4.17 8.70 -74.05 -0.64 -4.81 16 37 H -0.30 -0.97 7.11 99.48 0.71 -0.27 16 38 H -0.28 0.27 7.11 99.48 0.71 0.98 16 39 H 0.16 -1.44 4.85 -2.91 -0.01 -1.45 16 40 H 0.16 -1.09 6.30 -2.91 -0.02 -1.11 16 Total: 0.00 -31.18 340.82 2.40 -28.78 By element: Atomic # 1 Polarization: -20.30 SS G_CDS: -0.13 Total: -20.44 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 4.67 Total: 13.16 kcal Atomic # 7 Polarization: -5.28 SS G_CDS: -1.94 Total: -7.22 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -2.24 Total: -12.36 kcal Atomic # 14 Polarization: -3.96 SS G_CDS: 2.04 Total: -1.92 kcal Total: -31.18 2.40 -28.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_12496546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.770 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds