Wall clock time and date at job start Sun Mar 7 2021 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47111 * 96.70758 * 3 2 1 5 5 H 1.08994 * 112.84801 * 43.80318 * 4 3 2 6 6 C 1.53779 * 113.68826 * 272.52891 * 4 3 2 7 7 C 1.53783 * 87.08078 * 220.00748 * 6 4 3 8 8 H 1.09002 * 113.68418 * 139.99180 * 7 6 4 9 9 N 1.46493 * 113.61292 * 270.88614 * 7 6 4 10 10 C 1.34776 * 119.99831 * 252.49624 * 9 7 6 11 11 O 1.21280 * 120.00083 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99942 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47039 * 179.97438 * 12 10 9 14 14 C 1.35035 * 125.93017 * 124.99597 * 13 12 10 15 15 C 1.35090 * 107.98515 * 179.97438 * 14 13 12 16 16 C 1.50693 * 126.08186 * 180.02562 * 15 14 13 17 17 O 1.42894 * 109.47348 * 105.23207 * 16 15 14 18 18 Si 1.86302 * 109.47063 * 345.22991 * 16 15 14 19 19 C 1.40851 * 107.84203 * 359.97438 * 15 14 13 20 20 C 1.48420 * 126.03915 * 179.97438 * 19 15 14 21 21 C 1.39322 * 120.11713 * 316.94731 * 20 19 15 22 22 C 1.38024 * 119.87741 * 180.27402 * 21 20 19 23 23 C 1.38315 * 120.12131 * 359.97438 * 22 21 20 24 24 C 1.38321 * 120.24205 * 0.04711 * 23 22 21 25 25 C 1.38020 * 120.11762 * 359.95020 * 24 23 22 26 26 N 1.31622 * 107.92636 * 0.26523 * 19 15 14 27 27 C 1.53779 * 87.07918 * 25.43423 * 7 6 4 28 28 H 1.09000 * 109.47219 * 336.69969 * 3 2 1 29 29 H 1.09011 * 109.46857 * 216.70573 * 3 2 1 30 30 H 1.08999 * 113.61148 * 105.45901 * 6 4 3 31 31 H 1.09001 * 113.61475 * 334.55826 * 6 4 3 32 32 H 0.96998 * 120.00278 * 72.50028 * 9 7 6 33 33 H 1.08998 * 109.47337 * 60.00032 * 12 10 9 34 34 H 1.09002 * 109.46518 * 299.99635 * 12 10 9 35 35 H 1.08007 * 126.01153 * 359.96445 * 14 13 12 36 36 H 1.09008 * 109.46966 * 225.23267 * 16 15 14 37 37 H 0.96707 * 113.99664 * 299.99749 * 17 16 15 38 38 H 1.48494 * 109.99931 * 180.02562 * 18 16 15 39 39 H 1.48507 * 109.99758 * 301.32003 * 18 16 15 40 40 H 1.08007 * 120.06672 * 0.24953 * 21 20 19 41 41 H 1.08009 * 119.93709 * 180.02562 * 22 21 20 42 42 H 1.07998 * 119.88328 * 180.02562 * 23 22 21 43 43 H 1.07992 * 119.94335 * 179.97438 * 24 23 22 44 44 H 1.07994 * 120.06208 * 179.97438 * 25 24 23 45 45 H 1.09005 * 113.61442 * 89.11279 * 27 7 6 46 46 H 1.08997 * 113.61312 * 220.01686 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1179 0.1694 -1.4327 5 1 2.5751 0.9344 -1.9877 6 6 3.2658 -1.1573 -2.1961 7 6 4.5668 -0.5841 -2.7824 8 1 5.3741 -1.3131 -2.8522 9 7 4.3696 0.1673 -4.0244 10 6 4.7701 -0.3568 -5.1998 11 8 5.2933 -1.4505 -5.2292 12 6 4.5678 0.4164 -6.4775 13 7 5.0837 -0.3620 -7.6062 14 6 4.3919 -0.7059 -8.7137 15 6 5.2142 -1.4177 -9.5149 16 6 4.8580 -2.0026 -10.8572 17 8 5.4575 -1.2205 -11.8920 18 14 3.0068 -1.9950 -11.0664 19 6 6.4643 -1.5148 -8.8732 20 6 7.6638 -2.2132 -9.3990 21 6 7.5371 -3.4629 -10.0016 22 6 8.6566 -4.1104 -10.4838 23 6 9.9025 -3.5206 -10.3700 24 6 10.0341 -2.2802 -9.7722 25 6 8.9213 -1.6238 -9.2867 26 7 6.3790 -0.8823 -7.7221 27 6 4.6465 0.3053 -1.5304 28 1 2.9717 -0.9430 0.4065 29 1 2.9709 0.8248 0.6143 30 1 2.4868 -1.3219 -2.9404 31 1 3.4218 -2.0193 -1.5474 32 1 3.9509 1.0419 -4.0009 33 1 5.1014 1.3649 -6.4166 34 1 3.5043 0.6064 -6.6225 35 1 3.3620 -0.4561 -8.9222 36 1 5.2261 -3.0270 -10.9164 37 1 5.1749 -0.2956 -11.8997 38 1 2.6424 -2.5700 -12.3861 39 1 2.3695 -2.7789 -9.9778 40 1 6.5647 -3.9244 -10.0910 41 1 8.5595 -5.0791 -10.9515 42 1 10.7759 -4.0305 -10.7489 43 1 11.0093 -1.8243 -9.6855 44 1 9.0251 -0.6556 -8.8197 45 1 5.1800 -0.1568 -0.6997 46 1 4.9822 1.3215 -1.7374 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534922_12622748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:07:17 Heat of formation + Delta-G solvation = 101.792681 kcal Electronic energy + Delta-G solvation = -29777.265826 eV Core-core repulsion = 25636.541403 eV Total energy + Delta-G solvation = -4140.724423 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.46163 -41.45663 -39.85871 -39.49445 -37.63539 -37.46510 -34.90677 -34.63478 -32.29610 -31.91829 -31.43324 -31.12914 -28.71209 -26.98282 -26.05971 -24.83856 -23.88198 -23.29304 -22.18204 -21.52311 -20.89797 -20.54884 -19.02964 -18.65493 -18.33682 -17.60037 -17.37901 -16.98650 -16.56808 -16.38370 -16.31180 -16.02023 -15.93069 -15.55207 -15.38363 -15.34236 -14.97728 -14.66674 -14.34926 -14.20344 -14.15872 -14.10023 -13.89244 -13.86304 -13.69923 -13.55161 -13.34087 -13.20057 -12.63669 -12.39800 -12.31531 -12.22899 -12.00005 -11.76671 -11.75072 -11.63968 -11.45437 -11.22833 -10.55999 -10.26178 -10.18953 -9.69678 -9.67244 -9.19702 -5.08158 0.28604 0.64951 0.80040 1.20337 1.35965 1.37875 1.64455 1.73760 1.78581 1.84038 1.91170 2.01490 2.81507 3.04847 3.19193 3.24993 3.35109 3.40259 3.58704 3.59333 3.62228 3.65147 3.72411 3.81333 3.99879 4.10708 4.17087 4.22246 4.26484 4.33575 4.35554 4.47099 4.48332 4.49671 4.62071 4.64190 4.67938 4.79075 4.80017 4.84792 4.89581 4.90778 5.11344 5.25411 5.35543 5.41551 5.71133 5.74524 5.76464 5.82711 6.18069 6.22391 6.55684 6.68058 6.73779 6.99945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.202 3.798 3 C -0.018 4.018 4 C -0.110 4.110 5 H 0.098 0.902 6 C -0.150 4.150 7 C 0.121 3.879 8 H 0.107 0.893 9 N -0.714 5.714 10 C 0.501 3.499 11 O -0.500 6.500 12 C 0.116 3.884 13 N -0.359 5.359 14 C 0.064 3.936 15 C -0.250 4.250 16 C -0.027 4.027 17 O -0.538 6.538 18 Si 0.679 3.321 19 C 0.132 3.868 20 C -0.007 4.007 21 C -0.093 4.093 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.120 4.120 25 C -0.091 4.091 26 N -0.248 5.248 27 C -0.136 4.136 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.402 0.598 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.181 0.819 36 H 0.112 0.888 37 H 0.375 0.625 38 H -0.253 1.253 39 H -0.256 1.256 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.104 0.896 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.230 6.189 1.823 6.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.116 4.116 3 C -0.058 4.058 4 C -0.129 4.129 5 H 0.116 0.884 6 C -0.189 4.189 7 C 0.015 3.985 8 H 0.125 0.875 9 N -0.367 5.367 10 C 0.284 3.716 11 O -0.372 6.372 12 C -0.009 4.009 13 N -0.141 5.141 14 C -0.081 4.081 15 C -0.262 4.262 16 C -0.140 4.140 17 O -0.342 6.342 18 Si 0.581 3.419 19 C -0.035 4.035 20 C -0.009 4.009 21 C -0.113 4.113 22 C -0.137 4.137 23 C -0.131 4.131 24 C -0.138 4.138 25 C -0.110 4.110 26 N -0.068 5.068 27 C -0.174 4.174 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.237 0.763 33 H 0.137 0.863 34 H 0.147 0.853 35 H 0.197 0.803 36 H 0.129 0.871 37 H 0.222 0.778 38 H -0.177 1.177 39 H -0.181 1.181 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.122 0.878 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.017 4.769 2.743 5.594 hybrid contribution 0.084 -0.012 -0.297 0.309 sum -0.933 4.756 2.446 5.429 Atomic orbital electron populations 1.81295 1.13157 1.08585 1.08093 1.29216 0.95337 0.93455 0.93568 1.19346 0.81686 1.05959 0.98785 1.22629 0.96721 0.99319 0.94268 0.88412 1.23590 0.98238 0.97091 0.99932 1.21812 0.98845 0.95026 0.82804 0.87469 1.45565 1.63178 1.22121 1.05836 1.20565 0.78896 0.87150 0.84967 1.90847 1.40299 1.19932 1.86152 1.21508 1.02022 0.94342 0.83046 1.47840 1.09168 1.42589 1.14499 1.22219 0.98424 0.99460 0.87969 1.20464 0.94250 1.10596 1.00868 1.24394 1.09220 0.96566 0.83787 1.86529 1.71381 1.25247 1.51037 0.95412 0.75380 0.90200 0.80899 1.20596 0.93599 0.97611 0.91654 1.17690 0.90010 0.93960 0.99221 1.21079 0.98836 0.93849 0.97500 1.21066 0.92437 1.00120 1.00109 1.21248 0.97563 0.95515 0.98795 1.21099 0.98540 0.95411 0.98783 1.21157 0.91375 0.99925 0.98557 1.77809 0.96377 1.15136 1.17452 1.23383 0.95001 1.01203 0.97803 0.87029 0.86860 0.90864 0.88381 0.76304 0.86268 0.85293 0.80267 0.87082 0.77847 1.17745 1.18086 0.86122 0.85683 0.85843 0.85692 0.85867 0.87755 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -1.53 18.54 42.15 0.78 -0.75 16 2 C 0.20 -0.14 15.42 -20.76 -0.32 -0.46 16 3 C -0.02 0.10 5.54 -29.52 -0.16 -0.06 16 4 C -0.11 0.61 3.49 -89.81 -0.31 0.30 16 5 H 0.10 -0.56 8.12 -51.93 -0.42 -0.98 16 6 C -0.15 0.55 7.43 -25.92 -0.19 0.36 16 7 C 0.12 -0.38 4.32 -67.12 -0.29 -0.67 16 8 H 0.11 -0.07 7.46 -51.93 -0.39 -0.46 16 9 N -0.71 2.63 5.26 -53.02 -0.28 2.35 16 10 C 0.50 -0.18 7.86 -10.98 -0.09 -0.26 16 11 O -0.50 -2.65 15.29 5.56 0.09 -2.56 16 12 C 0.12 -0.38 6.99 -5.19 -0.04 -0.41 16 13 N -0.36 -0.37 3.40 -62.58 -0.21 -0.59 16 14 C 0.06 -0.03 9.96 -17.26 -0.17 -0.20 16 15 C -0.25 -0.45 5.35 -104.76 -0.56 -1.01 16 16 C -0.03 -0.02 2.51 36.00 0.09 0.07 16 17 O -0.54 -0.65 12.88 -35.23 -0.45 -1.10 16 18 Si 0.68 -0.70 30.74 -169.99 -5.22 -5.92 16 19 C 0.13 0.58 6.66 -82.77 -0.55 0.03 16 20 C -0.01 -0.03 5.74 -104.90 -0.60 -0.63 16 21 C -0.09 -0.34 8.89 -39.26 -0.35 -0.68 16 22 C -0.12 -0.30 10.03 -39.63 -0.40 -0.69 16 23 C -0.11 -0.24 10.04 -39.52 -0.40 -0.63 16 24 C -0.12 -0.29 10.03 -39.63 -0.40 -0.69 16 25 C -0.09 -0.34 9.78 -39.26 -0.38 -0.72 16 26 N -0.25 -1.20 11.66 33.43 0.39 -0.81 16 27 C -0.14 0.80 7.39 -25.92 -0.19 0.61 16 28 H 0.11 -0.78 7.85 -51.93 -0.41 -1.18 16 29 H 0.11 -0.84 8.14 -51.92 -0.42 -1.26 16 30 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 31 H 0.10 -0.40 7.90 -51.93 -0.41 -0.81 16 32 H 0.40 -2.79 8.70 -40.82 -0.36 -3.15 16 33 H 0.12 -0.65 8.14 -51.93 -0.42 -1.07 16 34 H 0.13 -0.95 8.07 -51.93 -0.42 -1.37 16 35 H 0.18 -0.86 6.40 -52.48 -0.34 -1.19 16 36 H 0.11 0.20 5.58 -51.92 -0.29 -0.09 16 37 H 0.37 -1.07 8.70 45.56 0.40 -0.68 16 38 H -0.25 -0.58 7.11 56.52 0.40 -0.18 16 39 H -0.26 -0.41 7.11 56.52 0.40 -0.01 16 40 H 0.12 0.31 6.22 -52.48 -0.33 -0.02 16 41 H 0.13 0.05 8.06 -52.48 -0.42 -0.37 16 42 H 0.12 0.00 8.06 -52.49 -0.42 -0.43 16 43 H 0.13 0.04 8.06 -52.49 -0.42 -0.38 16 44 H 0.12 0.38 8.06 -52.49 -0.42 -0.04 16 45 H 0.10 -0.70 8.10 -51.93 -0.42 -1.12 16 46 H 0.08 -0.51 8.14 -51.93 -0.42 -0.93 16 LS Contribution 397.33 15.07 5.99 5.99 Total: 0.00 -15.26 397.33 -10.20 -25.46 By element: Atomic # 1 Polarization: -10.33 SS G_CDS: -5.96 Total: -16.29 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -5.31 Total: -5.78 kcal Atomic # 7 Polarization: -0.47 SS G_CDS: 0.68 Total: 0.21 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: -0.37 Total: -3.67 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: -5.22 Total: -5.92 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -15.26 -10.20 -25.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_12622748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.252 kcal (2) G-P(sol) polarization free energy of solvation -15.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds