Wall clock time and date at job start Sun Mar 7 2021 06:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35882 * 117.00013 * 2 1 4 4 C 1.38824 * 119.93388 * 179.97438 * 3 2 1 5 5 C 1.37928 * 120.06125 * 179.97438 * 4 3 2 6 6 C 1.39357 * 119.93677 * 359.97438 * 5 4 3 7 7 C 1.48405 * 120.06371 * 179.97438 * 6 5 4 8 8 N 1.31635 * 126.03345 * 317.77426 * 7 6 5 9 9 N 1.40076 * 108.10333 * 180.12573 * 8 7 6 10 10 C 1.46496 * 125.92437 * 179.85519 * 9 8 7 11 11 C 1.50703 * 109.47559 * 304.69144 * 10 9 8 12 12 O 1.21285 * 119.99460 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99820 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99476 * 180.02562 * 13 11 10 15 15 H 1.08998 * 112.90976 * 336.24790 * 14 13 11 16 16 C 1.53778 * 113.61507 * 107.50230 * 14 13 11 17 17 C 1.53776 * 87.08497 * 89.11510 * 16 14 13 18 18 H 1.09003 * 113.68895 * 270.87707 * 17 16 14 19 19 C 1.52998 * 113.61924 * 139.98268 * 17 16 14 20 20 C 1.47198 * 109.47486 * 87.50102 * 19 17 16 21 21 N 9.38246 * 136.27304 * 301.80220 * 8 1 2 22 22 C 1.53780 * 87.08076 * 25.43274 * 17 16 14 23 23 C 1.35032 * 108.14076 * 359.59577 * 9 8 7 24 24 C 1.35085 * 107.98217 * 0.23942 * 23 9 8 25 25 C 1.50701 * 126.07621 * 180.02562 * 24 23 9 26 26 O 1.42908 * 109.47048 * 105.16618 * 25 24 23 27 27 Si 1.86299 * 109.47207 * 345.16695 * 25 24 23 28 28 C 1.39354 * 119.87055 * 0.25308 * 6 5 4 29 29 C 1.37923 * 119.93450 * 359.47018 * 28 6 5 30 30 H 1.09002 * 109.47224 * 299.99980 * 1 2 3 31 31 H 1.08995 * 109.46770 * 60.00211 * 1 2 3 32 32 H 1.09000 * 109.47055 * 180.02562 * 1 2 3 33 33 H 1.07997 * 119.97059 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.03142 * 179.97438 * 5 4 3 35 35 H 1.09006 * 109.47023 * 184.69038 * 10 9 8 36 36 H 1.09004 * 109.47409 * 64.69667 * 10 9 8 37 37 H 0.96995 * 120.00203 * 359.97438 * 13 11 10 38 38 H 1.09002 * 113.61729 * 203.66659 * 16 14 13 39 39 H 1.09001 * 113.61456 * 334.56694 * 16 14 13 40 40 H 1.09002 * 109.46998 * 207.50899 * 19 17 16 41 41 H 1.09004 * 109.46606 * 327.50122 * 19 17 16 42 42 H 1.08995 * 113.61919 * 220.02475 * 22 17 16 43 43 H 1.08995 * 113.69372 * 89.12564 * 22 17 16 44 44 H 1.08002 * 126.01148 * 180.27399 * 23 9 8 45 45 H 1.09003 * 109.47424 * 225.16401 * 25 24 23 46 46 H 0.96696 * 114.00111 * 180.02562 * 26 25 24 47 47 H 1.48489 * 110.00027 * 298.67933 * 27 25 24 48 48 H 1.48501 * 109.99987 * 60.00005 * 27 25 24 49 49 H 1.07997 * 120.02869 * 179.74903 * 28 6 5 50 50 H 1.08007 * 119.96501 * 180.25133 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 3.4323 1.2818 0.0005 5 6 4.0612 2.5093 0.0000 6 6 3.3035 3.6789 -0.0016 7 6 3.9773 5.0012 -0.0016 8 7 5.0303 5.3337 0.7148 9 7 5.3495 6.6669 0.4268 10 6 6.4536 7.4320 1.0113 11 6 6.3436 7.4047 2.5140 12 8 5.4322 6.8056 3.0445 13 7 7.2573 8.0470 3.2683 14 6 7.1506 8.0200 4.7292 15 1 6.1350 7.8315 5.0770 16 6 8.2086 7.1342 5.4079 17 6 9.1129 8.3774 5.4437 18 1 9.7295 8.4963 4.5527 19 6 9.9110 8.5178 6.7415 20 6 11.1764 7.7754 6.6221 21 7 12.1571 7.1976 6.5257 22 6 7.8253 9.2179 5.4184 23 6 4.4663 7.1225 -0.4874 24 6 3.6069 6.1201 -0.7728 25 6 2.4566 6.1868 -1.7441 26 8 2.7962 5.4726 -2.9344 27 14 2.1036 7.9664 -2.1672 28 6 1.9120 3.6044 0.0026 29 6 1.2886 2.3741 -0.0026 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 4.0190 0.3750 0.0014 34 1 5.1398 2.5640 0.0008 35 1 6.4057 8.4635 0.6621 36 1 7.4027 6.9896 0.7084 37 1 7.9859 8.5265 2.8440 38 1 7.9134 6.7804 6.3957 39 1 8.5869 6.3374 4.7674 40 1 10.1234 9.5710 6.9253 41 1 9.3298 8.1143 7.5707 42 1 7.8941 10.1032 4.7864 43 1 7.4243 9.4346 6.4084 44 1 4.4502 8.1138 -0.9157 45 1 1.5722 5.7386 -1.2913 46 1 2.1005 5.4739 -3.6059 47 1 1.7182 8.7127 -0.9427 48 1 3.3017 8.5889 -2.7854 49 1 1.3223 4.5092 0.0055 50 1 0.2101 2.3158 -0.0034 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_12622750.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:07:19 Heat of formation + Delta-G solvation = 63.156365 kcal Electronic energy + Delta-G solvation = -33978.893755 eV Core-core repulsion = 29362.274124 eV Total energy + Delta-G solvation = -4616.619630 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.168 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.60963 -41.35317 -40.98935 -39.63672 -38.45917 -37.56196 -37.39290 -34.90985 -34.53265 -32.43389 -32.13089 -31.47663 -30.87618 -28.94348 -27.96455 -26.66015 -26.00824 -24.62876 -23.70112 -23.66996 -22.15156 -21.68002 -20.95740 -20.31466 -19.19207 -18.87084 -18.38173 -18.31837 -18.14723 -17.18967 -16.98866 -16.91450 -16.66416 -16.31765 -16.01501 -15.80666 -15.71580 -15.62446 -15.30866 -15.15313 -14.92230 -14.82471 -14.62999 -14.45765 -14.26318 -14.08302 -14.01641 -13.78516 -13.66825 -13.47080 -13.33675 -13.11567 -13.00361 -12.80460 -12.63319 -12.38022 -12.17461 -12.07130 -11.91634 -11.79713 -11.71713 -11.50581 -11.29185 -11.15833 -10.57824 -10.15421 -10.14897 -10.02378 -9.78040 -9.00335 -4.90428 0.04908 0.30371 0.65407 1.15187 1.37224 1.38610 1.54169 1.76046 1.76079 1.81124 1.99263 2.02922 2.32766 2.73353 3.04152 3.22089 3.46747 3.48849 3.51247 3.66895 3.73650 3.76929 3.82682 3.87723 3.88530 3.93636 3.99681 4.09486 4.20355 4.26240 4.35805 4.38271 4.41260 4.45572 4.54137 4.62496 4.64913 4.73160 4.75060 4.81359 4.82326 4.87696 4.92626 4.98797 4.99740 5.06461 5.14946 5.22692 5.22797 5.45158 5.47259 5.58534 5.65071 5.74783 6.38215 6.38352 6.46897 6.64251 7.04024 7.08702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.126 3.874 4 C -0.163 4.163 5 C -0.064 4.064 6 C -0.062 4.062 7 C 0.120 3.880 8 N -0.291 5.291 9 N -0.360 5.360 10 C 0.107 3.893 11 C 0.499 3.501 12 O -0.563 6.563 13 N -0.695 5.695 14 C 0.106 3.894 15 H 0.079 0.921 16 C -0.158 4.158 17 C -0.098 4.098 18 H 0.100 0.900 19 C -0.015 4.015 20 C 0.232 3.768 21 N -0.520 5.520 22 C -0.113 4.113 23 C 0.057 3.943 24 C -0.227 4.227 25 C -0.047 4.047 26 O -0.565 6.565 27 Si 0.782 3.218 28 C -0.055 4.055 29 C -0.201 4.201 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.116 0.884 33 H 0.139 0.861 34 H 0.123 0.877 35 H 0.173 0.827 36 H 0.140 0.860 37 H 0.420 0.580 38 H 0.103 0.897 39 H 0.047 0.953 40 H 0.147 0.853 41 H 0.134 0.866 42 H 0.096 0.904 43 H 0.121 0.879 44 H 0.198 0.802 45 H 0.078 0.922 46 H 0.398 0.602 47 H -0.290 1.290 48 H -0.279 1.279 49 H 0.144 0.856 50 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.894 9.700 -2.307 11.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.248 6.248 3 C 0.080 3.920 4 C -0.181 4.181 5 C -0.083 4.083 6 C -0.065 4.065 7 C -0.045 4.045 8 N -0.112 5.112 9 N -0.142 5.142 10 C -0.017 4.017 11 C 0.284 3.716 12 O -0.440 6.440 13 N -0.349 5.349 14 C 0.001 3.999 15 H 0.097 0.903 16 C -0.196 4.196 17 C -0.118 4.118 18 H 0.119 0.881 19 C -0.054 4.054 20 C -0.084 4.084 21 N -0.198 5.198 22 C -0.150 4.150 23 C -0.088 4.088 24 C -0.238 4.238 25 C -0.157 4.157 26 O -0.374 6.374 27 Si 0.685 3.315 28 C -0.074 4.074 29 C -0.219 4.219 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.135 0.865 33 H 0.157 0.843 34 H 0.141 0.859 35 H 0.191 0.809 36 H 0.158 0.842 37 H 0.258 0.742 38 H 0.121 0.879 39 H 0.066 0.934 40 H 0.165 0.835 41 H 0.152 0.848 42 H 0.115 0.885 43 H 0.140 0.860 44 H 0.215 0.785 45 H 0.096 0.904 46 H 0.248 0.752 47 H -0.217 1.217 48 H -0.206 1.206 49 H 0.161 0.839 50 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.213 8.673 -0.678 9.273 hybrid contribution -0.056 -0.123 -0.174 0.221 sum -3.269 8.549 -0.852 9.192 Atomic orbital electron populations 1.23391 0.76179 1.05681 1.02581 1.86062 1.23720 1.26715 1.88338 1.19257 0.92352 0.84962 0.95424 1.20477 0.92163 0.98442 1.07063 1.20984 0.99795 0.90957 0.96600 1.17805 0.93352 0.88868 1.06434 1.20824 0.94111 0.94477 0.95114 1.77704 1.17439 0.93674 1.22381 1.48089 1.24755 1.08779 1.32559 1.21996 0.89755 0.99698 0.90232 1.20941 0.82080 0.78586 0.90021 1.90818 1.35200 1.43311 1.74642 1.45456 1.29396 1.53637 1.06385 1.21929 0.99525 0.99207 0.79257 0.90267 1.23654 0.96932 0.97101 1.01936 1.22542 0.95178 0.96395 0.97636 0.88143 1.19734 0.84271 1.01150 1.00235 1.30416 0.94658 0.92217 0.91100 1.81591 1.14723 1.12492 1.11008 1.23316 0.92837 0.95953 1.02933 1.22592 0.91288 1.00753 0.94217 1.19881 1.03905 0.93614 1.06444 1.24358 0.94950 1.10235 0.86145 1.86499 1.46589 1.77076 1.27202 0.94109 0.84062 0.71066 0.82248 1.21081 0.92418 0.98280 0.95661 1.21394 1.01460 0.91002 1.08057 0.91589 0.91089 0.86544 0.84302 0.85877 0.80950 0.84218 0.74167 0.87903 0.93374 0.83501 0.84810 0.88531 0.86034 0.78495 0.90403 0.75208 1.21738 1.20583 0.83886 0.82218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.33 -2.24 10.49 -92.22 -0.97 -3.20 16 3 C 0.13 1.03 6.69 22.55 0.15 1.18 16 4 C -0.16 -1.61 9.97 22.34 0.22 -1.39 16 5 C -0.06 -0.77 9.77 22.47 0.22 -0.55 16 6 C -0.06 -0.76 5.74 -20.03 -0.12 -0.87 16 7 C 0.12 1.64 6.66 42.52 0.28 1.92 16 8 N -0.29 -4.45 11.69 -48.16 -0.56 -5.02 16 9 N -0.36 -2.68 3.39 -351.91 -1.19 -3.88 16 10 C 0.11 -0.31 6.98 85.63 0.60 0.29 16 11 C 0.50 1.27 7.86 87.66 0.69 1.96 16 12 O -0.56 -8.37 15.32 -3.05 -0.05 -8.42 16 13 N -0.70 3.86 5.26 -440.03 -2.32 1.55 16 14 C 0.11 -0.52 4.32 45.52 0.20 -0.33 16 15 H 0.08 0.10 7.47 -2.39 -0.02 0.08 16 16 C -0.16 0.82 7.43 31.12 0.23 1.05 16 17 C -0.10 1.12 3.49 -10.27 -0.04 1.08 16 18 H 0.10 -1.15 8.12 -2.39 -0.02 -1.17 16 19 C -0.01 0.18 5.54 28.79 0.16 0.34 16 20 C 0.23 -0.10 15.44 89.37 1.38 1.28 16 21 N -0.52 -5.02 18.58 20.08 0.37 -4.65 16 22 C -0.11 1.49 7.39 31.12 0.23 1.72 16 23 C 0.06 0.32 9.96 83.47 0.83 1.15 16 24 C -0.23 -1.99 5.39 -19.95 -0.11 -2.10 16 25 C -0.05 -0.08 2.50 71.24 0.18 0.09 16 26 O -0.56 -1.36 12.86 -148.98 -1.92 -3.28 16 27 Si 0.78 -2.60 30.77 68.60 2.11 -0.48 16 28 C -0.06 -0.39 8.88 22.46 0.20 -0.19 16 29 C -0.20 -0.95 9.02 22.33 0.20 -0.75 16 30 H 0.07 -0.26 7.66 -2.39 -0.02 -0.27 16 31 H 0.07 -0.34 7.65 -2.39 -0.02 -0.35 16 32 H 0.12 -0.63 8.14 -2.39 -0.02 -0.65 16 33 H 0.14 1.04 8.06 -2.91 -0.02 1.01 16 34 H 0.12 1.47 8.06 -2.91 -0.02 1.45 16 35 H 0.17 -2.21 8.07 -2.38 -0.02 -2.23 16 36 H 0.14 -1.01 8.14 -2.38 -0.02 -1.02 16 37 H 0.42 -5.52 8.70 -92.71 -0.81 -6.33 16 38 H 0.10 -0.65 7.90 -2.39 -0.02 -0.67 16 39 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.15 -2.65 8.14 -2.39 -0.02 -2.67 16 41 H 0.13 -2.12 7.84 -2.39 -0.02 -2.14 16 42 H 0.10 -1.50 8.14 -2.39 -0.02 -1.52 16 43 H 0.12 -1.94 8.10 -2.39 -0.02 -1.96 16 44 H 0.20 -0.24 6.35 -2.91 -0.02 -0.26 16 45 H 0.08 -0.06 5.56 -2.39 -0.01 -0.08 16 46 H 0.40 -3.34 8.74 -74.06 -0.65 -3.99 16 47 H -0.29 -0.68 7.11 99.48 0.71 0.03 16 48 H -0.28 -0.25 7.04 99.48 0.70 0.45 16 49 H 0.14 0.42 6.20 -2.91 -0.02 0.40 16 50 H 0.16 -0.27 6.28 -2.91 -0.02 -0.29 16 Total: 0.00 -44.29 426.82 1.70 -42.59 By element: Atomic # 1 Polarization: -21.78 SS G_CDS: -0.41 Total: -22.19 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 6.62 Total: 6.98 kcal Atomic # 7 Polarization: -8.29 SS G_CDS: -3.70 Total: -11.99 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -2.93 Total: -14.90 kcal Atomic # 14 Polarization: -2.60 SS G_CDS: 2.11 Total: -0.48 kcal Total: -44.29 1.70 -42.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_12622750.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.750 kcal (2) G-P(sol) polarization free energy of solvation -44.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds