Wall clock time and date at job start Sun Mar 7 2021 06:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47388 * 322.89434 * 3 2 1 5 5 H 1.09007 * 112.84867 * 43.80445 * 4 3 2 6 6 C 1.54052 * 113.61934 * 272.49690 * 4 3 2 7 7 C 1.53784 * 86.98581 * 220.02034 * 6 4 3 8 8 H 1.08999 * 113.61355 * 140.02205 * 7 6 4 9 9 N 1.46501 * 113.61283 * 270.84048 * 7 6 4 10 10 C 1.34780 * 119.99645 * 254.13671 * 9 7 6 11 11 O 1.21285 * 120.00313 * 359.97438 * 10 9 7 12 12 C 1.50708 * 119.99974 * 180.02562 * 10 9 7 13 13 C 1.50694 * 109.46999 * 179.97438 * 12 10 9 14 14 C 1.38279 * 119.93482 * 90.00095 * 13 12 10 15 15 C 1.38126 * 120.06609 * 179.97438 * 14 13 12 16 16 C 1.38828 * 119.93209 * 0.02562 * 15 14 13 17 17 N 1.40205 * 120.06118 * 180.02562 * 16 15 14 18 18 C 1.36567 * 125.66622 * 236.07198 * 17 16 15 19 19 C 1.34847 * 108.20045 * 179.83095 * 18 17 16 20 20 C 1.40935 * 107.46696 * 0.42465 * 19 18 17 21 21 C 1.34855 * 107.46885 * 359.73559 * 20 19 18 22 22 C 1.50703 * 125.89939 * 179.97438 * 21 20 19 23 23 O 1.42896 * 109.46858 * 218.22381 * 22 21 20 24 24 Si 1.86296 * 109.47201 * 338.22680 * 22 21 20 25 25 C 1.38821 * 119.87026 * 0.27270 * 16 15 14 26 26 C 1.38128 * 119.93544 * 359.42801 * 25 16 15 27 27 C 1.53779 * 113.61712 * 174.99987 * 4 3 2 28 28 H 1.08998 * 109.46932 * 202.89741 * 3 2 1 29 29 H 1.08999 * 109.46888 * 82.89449 * 3 2 1 30 30 H 1.09006 * 113.69501 * 105.50614 * 6 4 3 31 31 H 1.09000 * 113.61673 * 334.52601 * 6 4 3 32 32 H 0.96991 * 120.00460 * 74.13694 * 9 7 6 33 33 H 1.08994 * 109.47019 * 59.99601 * 12 10 9 34 34 H 1.08996 * 109.46402 * 300.00035 * 12 10 9 35 35 H 1.07998 * 119.96285 * 0.02562 * 14 13 12 36 36 H 1.07997 * 120.03019 * 180.02562 * 15 14 13 37 37 H 1.08002 * 125.89922 * 359.96168 * 18 17 16 38 38 H 1.07999 * 126.26691 * 180.13814 * 19 18 17 39 39 H 1.08003 * 126.26686 * 179.75376 * 20 19 18 40 40 H 1.09005 * 109.46772 * 98.22698 * 22 21 20 41 41 H 0.96702 * 113.99984 * 65.23299 * 23 22 21 42 42 H 1.48502 * 110.00133 * 58.68028 * 24 22 21 43 43 H 1.48501 * 110.00138 * 179.97438 * 24 22 21 44 44 H 1.08004 * 120.03650 * 179.73055 * 25 16 15 45 45 H 1.07996 * 119.96710 * 180.30151 * 26 25 16 46 46 H 1.09000 * 113.61023 * 25.43579 * 27 4 3 47 47 H 1.08997 * 113.69231 * 254.54137 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.1495 0.8702 5 1 2.5766 -2.0802 0.7022 6 6 3.2662 -0.7791 2.3582 7 6 4.5676 -1.5985 2.3493 8 1 5.3744 -1.1427 2.9233 9 7 4.3716 -3.0147 2.6689 10 6 4.7441 -3.4915 3.8733 11 8 5.2419 -2.7483 4.6923 12 6 4.5430 -4.9485 4.2019 13 6 5.0394 -5.2216 5.5983 14 6 4.1783 -5.0982 6.6732 15 6 4.6303 -5.3483 7.9542 16 6 5.9507 -5.7234 8.1620 17 7 6.4122 -5.9785 9.4611 18 6 7.4742 -5.3666 10.0634 19 6 7.6035 -5.8740 11.3061 20 6 6.5921 -6.8407 11.4756 21 6 5.8781 -6.8844 10.3324 22 6 4.6956 -7.7789 10.0627 23 8 4.7430 -8.2362 8.7098 24 14 4.7479 -9.2418 11.2150 25 6 6.8144 -5.8405 7.0816 26 6 6.3551 -5.5950 5.8022 27 6 4.6474 -1.3129 0.8404 28 1 2.9709 0.9475 0.3998 29 1 2.9714 -0.1263 -1.0198 30 1 2.4884 -1.2020 2.9942 31 1 3.4220 0.2859 2.5298 32 1 3.9738 -3.6092 2.0139 33 1 5.0994 -5.5611 3.4926 34 1 3.4825 -5.1921 4.1387 35 1 3.1511 -4.8067 6.5108 36 1 3.9571 -5.2522 8.7933 37 1 8.1008 -4.6059 9.6216 38 1 8.3488 -5.5944 12.0359 39 1 6.4201 -7.4372 12.3594 40 1 3.7734 -7.2208 10.2255 41 1 5.4979 -8.8081 8.5142 42 1 4.7312 -8.7781 12.6257 43 1 3.5865 -10.1313 10.9596 44 1 7.8433 -6.1279 7.2406 45 1 7.0254 -5.6906 4.9608 46 1 5.1801 -0.3935 0.5976 47 1 4.9853 -2.1659 0.2518 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_13287746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:07:53 Heat of formation + Delta-G solvation = 70.636585 kcal Electronic energy + Delta-G solvation = -29504.535568 eV Core-core repulsion = 25427.886026 eV Total energy + Delta-G solvation = -4076.649542 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.69492 -41.37115 -40.20242 -39.18533 -37.69308 -37.47846 -34.86131 -34.54319 -32.15736 -31.96181 -31.07993 -30.84150 -27.83851 -26.59298 -26.06362 -24.50620 -23.96650 -23.27391 -21.67917 -21.45745 -20.62462 -20.20004 -19.25810 -18.72768 -17.94505 -17.48106 -17.16914 -17.06579 -16.50176 -16.19561 -15.94303 -15.88097 -15.80405 -15.51005 -15.37599 -15.01355 -14.68234 -14.50024 -14.47646 -14.37229 -14.22032 -14.05291 -13.95345 -13.69786 -13.37265 -13.34363 -13.23949 -13.10728 -12.90575 -12.61415 -12.32759 -12.17990 -12.03609 -11.95099 -11.84835 -11.43537 -11.08390 -10.99909 -10.74401 -10.24498 -10.00764 -9.98630 -9.23958 -9.10360 -4.97182 0.01321 0.34847 1.06988 1.32349 1.63928 1.64170 1.82705 1.86264 1.87532 1.95749 2.08407 2.18077 2.72844 3.08962 3.39552 3.57195 3.62656 3.66725 3.73693 3.75695 3.87839 3.90638 4.00139 4.04972 4.13023 4.23650 4.32248 4.40198 4.43513 4.48819 4.50953 4.61286 4.63384 4.70031 4.78833 4.83107 4.89440 4.95773 4.96692 4.98228 5.13124 5.18438 5.20692 5.22105 5.22522 5.32931 5.35076 5.50052 5.70907 5.79445 5.91991 6.16661 6.48988 6.58539 6.63732 6.67355 7.30291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C 0.233 3.767 3 C -0.016 4.016 4 C -0.099 4.099 5 H 0.099 0.901 6 C -0.157 4.157 7 C 0.106 3.894 8 H 0.081 0.919 9 N -0.703 5.703 10 C 0.515 3.485 11 O -0.580 6.580 12 C -0.099 4.099 13 C -0.066 4.066 14 C -0.100 4.100 15 C -0.111 4.111 16 C 0.118 3.882 17 N -0.395 5.395 18 C -0.018 4.018 19 C -0.199 4.199 20 C -0.204 4.204 21 C -0.018 4.018 22 C -0.054 4.054 23 O -0.547 6.547 24 Si 0.809 3.191 25 C -0.119 4.119 26 C -0.093 4.093 27 C -0.115 4.115 28 H 0.134 0.866 29 H 0.145 0.855 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.417 0.583 33 H 0.138 0.862 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.110 0.890 37 H 0.175 0.825 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.099 0.901 41 H 0.389 0.611 42 H -0.283 1.283 43 H -0.289 1.289 44 H 0.137 0.863 45 H 0.150 0.850 46 H 0.120 0.880 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.279 -3.016 -7.038 9.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.197 5.197 2 C -0.083 4.083 3 C -0.055 4.055 4 C -0.119 4.119 5 H 0.117 0.883 6 C -0.196 4.196 7 C 0.001 3.999 8 H 0.099 0.901 9 N -0.356 5.356 10 C 0.302 3.698 11 O -0.459 6.459 12 C -0.138 4.138 13 C -0.066 4.066 14 C -0.119 4.119 15 C -0.130 4.130 16 C 0.029 3.971 17 N -0.068 5.068 18 C -0.146 4.146 19 C -0.223 4.223 20 C -0.229 4.229 21 C -0.128 4.128 22 C -0.163 4.163 23 O -0.353 6.353 24 Si 0.712 3.288 25 C -0.138 4.138 26 C -0.112 4.112 27 C -0.153 4.153 28 H 0.152 0.848 29 H 0.163 0.837 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.255 0.745 33 H 0.156 0.844 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.128 0.872 37 H 0.192 0.808 38 H 0.173 0.827 39 H 0.169 0.831 40 H 0.117 0.883 41 H 0.238 0.762 42 H -0.209 1.209 43 H -0.217 1.217 44 H 0.155 0.845 45 H 0.168 0.832 46 H 0.138 0.862 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.870 -2.493 -6.199 7.722 hybrid contribution -0.381 0.692 0.236 0.825 sum 3.490 -1.801 -5.963 7.140 Atomic orbital electron populations 1.81322 1.15888 1.11053 1.11486 1.30146 0.96167 0.91080 0.90868 1.19736 0.78231 1.02228 1.05349 1.22584 0.97379 0.98293 0.93609 0.88325 1.23694 0.97530 1.01513 0.96862 1.21895 0.98054 0.81406 0.98568 0.90095 1.45620 1.63375 1.10373 1.16183 1.20970 0.76682 0.90627 0.81502 1.90749 1.45216 1.60802 1.49113 1.20765 1.05977 0.92543 0.94518 1.19567 0.93911 0.98295 0.94841 1.21005 1.00455 0.98973 0.91451 1.20917 0.94514 0.99721 0.97873 1.17727 0.93980 1.02588 0.82845 1.41556 1.24902 1.30116 1.10216 1.22322 0.94032 1.03092 0.95134 1.21176 1.02713 1.01361 0.97028 1.20983 0.99251 1.04565 0.98078 1.21277 1.01412 0.98300 0.91824 1.25004 0.95184 1.03537 0.92601 1.86480 1.52293 1.70316 1.26225 0.93031 0.84909 0.76735 0.74171 1.21165 0.99995 1.01088 0.91548 1.21124 0.95219 0.97989 0.96827 1.23309 0.94270 1.04863 0.92882 0.84831 0.83716 0.93230 0.87996 0.74535 0.84428 0.85594 0.84905 0.87184 0.80793 0.82748 0.83101 0.88343 0.76174 1.20915 1.21674 0.84471 0.83239 0.86196 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -4.64 18.54 20.01 0.37 -4.27 16 2 C 0.23 -0.23 15.42 89.44 1.38 1.15 16 3 C -0.02 0.21 5.54 28.79 0.16 0.37 16 4 C -0.10 1.18 3.51 -10.18 -0.04 1.15 16 5 H 0.10 -1.15 8.12 -2.38 -0.02 -1.17 16 6 C -0.16 1.02 7.45 31.21 0.23 1.25 16 7 C 0.11 -0.66 4.30 45.52 0.20 -0.47 16 8 H 0.08 -0.06 7.50 -2.39 -0.02 -0.08 16 9 N -0.70 4.73 5.26 -440.01 -2.32 2.41 16 10 C 0.51 -0.24 7.82 87.66 0.69 0.44 16 11 O -0.58 -5.92 15.65 -3.05 -0.05 -5.96 16 12 C -0.10 0.59 5.83 29.10 0.17 0.76 16 13 C -0.07 -0.06 4.37 -19.85 -0.09 -0.14 16 14 C -0.10 -0.41 9.69 22.25 0.22 -0.19 16 15 C -0.11 -0.78 8.62 22.38 0.19 -0.58 16 16 C 0.12 0.74 4.67 38.08 0.18 0.92 16 17 N -0.39 -2.63 2.84 -333.41 -0.95 -3.58 16 18 C -0.02 -0.10 11.21 83.18 0.93 0.83 16 19 C -0.20 -1.01 10.86 22.15 0.24 -0.77 16 20 C -0.20 -1.05 9.39 22.15 0.21 -0.84 16 21 C -0.02 -0.10 6.12 41.05 0.25 0.15 16 22 C -0.05 -0.15 2.49 71.24 0.18 0.03 16 23 O -0.55 -1.22 11.01 -148.98 -1.64 -2.86 16 24 Si 0.81 -0.57 30.94 68.60 2.12 1.55 16 25 C -0.12 -0.36 9.76 22.38 0.22 -0.14 16 26 C -0.09 -0.06 9.69 22.25 0.22 0.16 16 27 C -0.12 1.58 7.38 31.12 0.23 1.81 16 28 H 0.13 -2.18 7.85 -2.39 -0.02 -2.20 16 29 H 0.15 -2.63 8.14 -2.39 -0.02 -2.65 16 30 H 0.05 -0.07 8.14 -2.38 -0.02 -0.09 16 31 H 0.10 -0.78 7.90 -2.39 -0.02 -0.80 16 32 H 0.42 -5.47 8.70 -92.71 -0.81 -6.27 16 33 H 0.14 -1.66 8.08 -2.39 -0.02 -1.68 16 34 H 0.13 -1.25 8.08 -2.39 -0.02 -1.27 16 35 H 0.13 0.18 8.06 -2.91 -0.02 0.16 16 36 H 0.11 0.89 8.06 -2.91 -0.02 0.87 16 37 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 38 H 0.15 0.22 8.06 -2.91 -0.02 0.19 16 39 H 0.15 0.36 6.43 -2.91 -0.02 0.35 16 40 H 0.10 0.44 7.96 -2.38 -0.02 0.43 16 41 H 0.39 -1.72 8.60 -74.06 -0.64 -2.36 16 42 H -0.28 -1.12 6.86 99.48 0.68 -0.44 16 43 H -0.29 -1.47 7.11 99.48 0.71 -0.76 16 44 H 0.14 0.05 8.06 -2.91 -0.02 0.03 16 45 H 0.15 -0.65 8.06 -2.91 -0.02 -0.68 16 46 H 0.12 -1.97 8.10 -2.39 -0.02 -1.98 16 47 H 0.09 -1.46 8.14 -2.39 -0.02 -1.48 16 Total: 0.00 -31.25 402.44 2.88 -28.37 By element: Atomic # 1 Polarization: -21.11 SS G_CDS: -0.42 Total: -21.53 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 5.76 Total: 5.88 kcal Atomic # 7 Polarization: -2.55 SS G_CDS: -2.89 Total: -5.44 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -1.69 Total: -8.83 kcal Atomic # 14 Polarization: -0.57 SS G_CDS: 2.12 Total: 1.55 kcal Total: -31.25 2.88 -28.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_13287746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.005 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds