Wall clock time and date at job start Sun Mar 7 2021 06:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36416 * 125.80153 * 2 1 4 4 C 1.47375 * 127.19415 * 0.05057 * 3 2 1 5 5 O 1.21617 * 119.99766 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00591 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00636 * 179.97438 * 6 4 3 8 8 H 1.09009 * 112.84496 * 23.80195 * 7 6 4 9 9 C 1.53776 * 113.61954 * 155.00146 * 7 6 4 10 10 C 1.53776 * 87.08370 * 89.11721 * 9 7 6 11 11 H 1.09001 * 113.61794 * 270.88769 * 10 9 7 12 12 C 1.52999 * 113.61598 * 139.98286 * 10 9 7 13 13 C 1.47200 * 109.47161 * 175.00084 * 12 10 9 14 14 N 9.14589 * 116.36335 * 334.51449 * 2 1 3 15 15 C 1.53776 * 87.08230 * 25.43395 * 10 9 7 16 16 C 1.47026 * 105.61875 * 180.02562 * 3 2 1 17 17 C 1.34185 * 105.94931 * 0.02562 * 16 3 2 18 18 C 1.50700 * 125.43527 * 179.97438 * 17 16 3 19 19 O 1.42905 * 109.47251 * 300.00064 * 18 17 16 20 20 Si 1.86295 * 109.47250 * 180.02562 * 18 17 16 21 21 O 1.33659 * 125.80371 * 180.02562 * 2 1 3 22 22 H 1.09004 * 109.47359 * 89.99714 * 1 2 3 23 23 H 1.09002 * 109.46592 * 209.99464 * 1 2 3 24 24 H 1.08998 * 109.46838 * 329.99224 * 1 2 3 25 25 H 0.97009 * 119.99726 * 359.97438 * 6 4 3 26 26 H 1.09000 * 113.61723 * 203.66618 * 9 7 6 27 27 H 1.09008 * 113.61112 * 334.48257 * 9 7 6 28 28 H 1.08996 * 109.46813 * 295.00303 * 12 10 9 29 29 H 1.09006 * 109.46700 * 55.00356 * 12 10 9 30 30 H 1.09006 * 113.61896 * 220.02227 * 15 10 9 31 31 H 1.09000 * 113.61763 * 89.11057 * 15 10 9 32 32 H 1.07999 * 127.02436 * 179.74046 * 16 3 2 33 33 H 1.09006 * 109.47194 * 59.99671 * 18 17 16 34 34 H 0.96693 * 113.99693 * 300.00230 * 19 18 17 35 35 H 1.48499 * 110.00210 * 58.67905 * 20 18 17 36 36 H 1.48499 * 110.00117 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1064 0.0000 4 6 1.8740 2.5157 0.0010 5 8 0.6890 2.7892 0.0016 6 7 2.7930 3.5016 0.0014 7 6 2.3646 4.9025 0.0019 8 1 1.3618 5.0383 0.4073 9 6 3.4055 5.8649 0.5976 10 6 3.9877 5.9880 -0.8203 11 1 4.7503 5.2424 -1.0455 12 6 4.4193 7.4099 -1.1844 13 6 5.0691 7.4025 -2.5052 14 7 5.5683 7.3973 -3.5260 15 6 2.5897 5.6160 -1.3417 16 6 3.6850 0.5991 -0.0006 17 6 3.5859 -0.7391 -0.0015 18 6 4.7459 -1.7010 -0.0030 19 8 5.5419 -1.4858 -1.1701 20 14 4.1028 -3.4494 -0.0046 21 8 2.2889 -1.0840 -0.0005 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3632 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5140 25 1 3.7382 3.2835 0.0014 26 1 2.9763 6.7929 0.9755 27 1 4.0817 5.3907 1.3092 28 1 3.5441 8.0589 -1.2136 29 1 5.1209 7.7794 -0.4364 30 1 2.6080 4.9405 -2.1971 31 1 1.9374 6.4759 -1.4940 32 1 4.5928 1.1841 -0.0047 33 1 5.3543 -1.5381 0.8867 34 1 5.0641 -1.6136 -2.0010 35 1 3.2462 -3.6745 -1.1966 36 1 5.2370 -4.4079 -0.0054 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_13308374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:07:59 Heat of formation + Delta-G solvation = -2.048449 kcal Electronic energy + Delta-G solvation = -20862.461521 eV Core-core repulsion = 17508.921257 eV Total energy + Delta-G solvation = -3353.540264 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.77441 -41.19445 -39.46283 -38.17680 -37.47673 -34.80157 -33.97501 -33.08943 -31.06087 -29.36052 -26.59983 -26.12482 -24.83987 -23.74064 -22.29939 -20.87866 -20.08051 -19.07864 -18.54849 -17.95997 -17.72867 -16.95737 -16.77967 -16.15979 -16.06849 -15.86848 -15.71428 -15.40685 -14.93351 -14.57292 -14.24160 -14.12572 -14.00862 -13.93791 -13.83104 -13.66053 -13.31566 -13.07413 -12.94575 -12.82970 -12.34804 -12.19460 -11.86299 -11.44282 -11.16897 -11.09941 -10.95941 -10.74902 -10.06883 -9.57993 -4.95076 0.22325 0.81190 1.17153 1.41757 1.69420 1.82208 1.87218 1.90800 2.15699 2.23963 3.08926 3.15403 3.37544 3.55539 3.71986 3.73772 3.76780 3.94196 3.98795 4.11329 4.38494 4.41895 4.47254 4.58855 4.63627 4.70294 4.75567 4.80120 4.89181 4.95384 4.97832 5.12437 5.13272 5.20687 5.21911 5.30648 5.67149 5.88216 6.31143 6.49465 6.67260 7.17415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.085 3.915 3 C -0.270 4.270 4 C 0.590 3.410 5 O -0.573 6.573 6 N -0.696 5.696 7 C 0.106 3.894 8 H 0.091 0.909 9 C -0.116 4.116 10 C -0.102 4.102 11 H 0.092 0.908 12 C -0.014 4.014 13 C 0.233 3.767 14 N -0.519 5.519 15 C -0.154 4.154 16 C -0.147 4.147 17 C -0.059 4.059 18 C -0.032 4.032 19 O -0.534 6.534 20 Si 0.770 3.230 21 O -0.172 6.172 22 H 0.094 0.906 23 H 0.101 0.899 24 H 0.099 0.901 25 H 0.412 0.588 26 H 0.127 0.873 27 H 0.089 0.911 28 H 0.138 0.862 29 H 0.145 0.855 30 H 0.047 0.953 31 H 0.110 0.890 32 H 0.177 0.823 33 H 0.159 0.841 34 H 0.389 0.611 35 H -0.296 1.296 36 H -0.282 1.282 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.276 0.517 7.269 7.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.031 3.969 3 C -0.274 4.274 4 C 0.379 3.621 5 O -0.454 6.454 6 N -0.347 5.347 7 C 0.001 3.999 8 H 0.109 0.891 9 C -0.153 4.153 10 C -0.121 4.121 11 H 0.110 0.890 12 C -0.053 4.053 13 C -0.083 4.083 14 N -0.198 5.198 15 C -0.193 4.193 16 C -0.167 4.167 17 C -0.107 4.107 18 C -0.142 4.142 19 O -0.342 6.342 20 Si 0.675 3.325 21 O -0.070 6.070 22 H 0.112 0.888 23 H 0.120 0.880 24 H 0.118 0.882 25 H 0.248 0.752 26 H 0.145 0.855 27 H 0.108 0.892 28 H 0.156 0.844 29 H 0.162 0.838 30 H 0.066 0.934 31 H 0.128 0.872 32 H 0.194 0.806 33 H 0.176 0.824 34 H 0.239 0.761 35 H -0.223 1.223 36 H -0.209 1.209 Dipole moment (debyes) X Y Z Total from point charges 0.002 -0.208 5.762 5.765 hybrid contribution 0.484 0.362 -1.274 1.410 sum 0.486 0.154 4.488 4.517 Atomic orbital electron populations 1.20714 0.82586 1.05809 1.05000 1.23247 0.94796 0.83014 0.95810 1.21245 0.94192 0.93631 1.18370 1.17342 0.85275 0.84387 0.75081 1.90755 1.17922 1.84497 1.52268 1.45404 1.09810 1.05278 1.74205 1.21990 1.00211 0.79714 0.97992 0.89080 1.23339 0.96622 1.00135 0.95241 1.22534 0.96373 0.95679 0.97559 0.88951 1.19728 1.02239 0.98931 0.84439 1.30181 0.91848 0.91085 0.95203 1.81333 1.12629 1.10883 1.14921 1.23658 0.97773 1.01131 0.96743 1.22791 0.96406 0.93636 1.03821 1.22834 0.82854 0.95968 1.09005 1.24499 0.90129 1.06982 0.92571 1.86641 1.39418 1.91717 1.16455 0.93537 0.78772 0.72232 0.87998 1.83677 1.16796 1.35044 1.71442 0.88759 0.88012 0.88246 0.75181 0.85532 0.89243 0.84440 0.83755 0.93416 0.87193 0.80565 0.82373 0.76062 1.22333 1.20884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.00 9.89 71.24 0.70 0.71 16 2 C 0.08 0.27 7.37 25.26 0.19 0.45 16 3 C -0.27 -0.90 6.31 -18.99 -0.12 -1.02 16 4 C 0.59 2.89 7.81 86.65 0.68 3.57 16 5 O -0.57 -6.38 14.44 -4.08 -0.06 -6.44 16 6 N -0.70 1.38 5.26 -443.34 -2.33 -0.95 16 7 C 0.11 -0.48 4.32 45.52 0.20 -0.28 16 8 H 0.09 -0.05 7.46 -2.38 -0.02 -0.07 16 9 C -0.12 1.41 7.39 31.12 0.23 1.64 16 10 C -0.10 1.05 3.49 -10.27 -0.04 1.02 16 11 H 0.09 -0.83 8.12 -2.39 -0.02 -0.85 16 12 C -0.01 0.17 5.54 28.79 0.16 0.33 16 13 C 0.23 -0.03 15.42 89.44 1.38 1.35 16 14 N -0.52 -5.08 18.54 20.01 0.37 -4.71 16 15 C -0.15 0.86 7.43 31.12 0.23 1.09 16 16 C -0.15 0.09 10.46 23.65 0.25 0.33 16 17 C -0.06 0.02 6.20 24.76 0.15 0.18 16 18 C -0.03 0.11 2.98 71.24 0.21 0.32 16 19 O -0.53 0.50 12.86 -148.98 -1.92 -1.41 16 20 Si 0.77 -1.98 32.08 68.60 2.20 0.22 16 21 O -0.17 -0.33 8.89 4.46 0.04 -0.29 16 22 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 23 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 24 H 0.10 0.28 6.48 -2.39 -0.02 0.26 16 25 H 0.41 -2.69 7.87 -92.70 -0.73 -3.42 16 26 H 0.13 -2.02 8.10 -2.39 -0.02 -2.04 16 27 H 0.09 -1.17 8.14 -2.38 -0.02 -1.18 16 28 H 0.14 -2.24 7.84 -2.39 -0.02 -2.26 16 29 H 0.14 -2.51 8.14 -2.38 -0.02 -2.53 16 30 H 0.05 0.00 8.14 -2.38 -0.02 -0.02 16 31 H 0.11 -0.88 7.90 -2.39 -0.02 -0.90 16 32 H 0.18 -0.94 7.74 -2.91 -0.02 -0.97 16 33 H 0.16 -1.20 7.96 -2.38 -0.02 -1.22 16 34 H 0.39 -2.09 8.70 -74.06 -0.64 -2.74 16 35 H -0.30 -1.22 7.11 99.48 0.71 -0.51 16 36 H -0.28 -0.87 7.11 99.48 0.71 -0.16 16 Total: 0.00 -25.39 319.79 2.32 -23.08 By element: Atomic # 1 Polarization: -18.96 SS G_CDS: -0.21 Total: -19.17 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 4.22 Total: 9.68 kcal Atomic # 7 Polarization: -3.70 SS G_CDS: -1.96 Total: -5.66 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -1.94 Total: -8.15 kcal Atomic # 14 Polarization: -1.98 SS G_CDS: 2.20 Total: 0.22 kcal Total: -25.39 2.32 -23.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_13308374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.028 kcal (2) G-P(sol) polarization free energy of solvation -25.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds