Wall clock time and date at job start Sun Mar 7 2021 06:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47153 * 23.20114 * 3 2 1 5 5 H 1.08998 * 112.91124 * 316.25024 * 4 3 2 6 6 C 1.53784 * 113.61319 * 185.00013 * 4 3 2 7 7 C 1.53779 * 87.07893 * 220.02322 * 6 4 3 8 8 H 1.09002 * 113.61198 * 140.06878 * 7 6 4 9 9 N 1.46502 * 113.61551 * 270.88299 * 7 6 4 10 10 C 1.34780 * 120.00370 * 203.47539 * 9 7 6 11 11 O 1.21280 * 119.99433 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99859 * 179.97438 * 10 9 7 13 13 C 1.53043 * 109.18720 * 180.77342 * 12 10 9 14 14 C 1.53549 * 108.56183 * 190.25917 * 13 12 10 15 15 N 1.47033 * 107.64616 * 60.96313 * 14 13 12 16 16 C 1.38925 * 118.88258 * 316.31881 * 15 14 13 17 17 C 1.31115 * 121.84993 * 13.31784 * 16 15 14 18 18 C 1.50697 * 118.54612 * 179.59011 * 17 16 15 19 19 O 1.42899 * 109.46960 * 110.00040 * 18 17 16 20 20 Si 1.86299 * 109.47121 * 350.00299 * 18 17 16 21 21 C 1.53777 * 87.17689 * 25.47504 * 7 6 4 22 22 H 1.09003 * 109.46492 * 263.20473 * 3 2 1 23 23 H 1.08991 * 109.46870 * 143.20496 * 3 2 1 24 24 H 1.08997 * 113.61387 * 105.47536 * 6 4 3 25 25 H 1.09003 * 113.61156 * 334.57120 * 6 4 3 26 26 H 0.97002 * 119.99470 * 23.47092 * 9 7 6 27 27 H 1.09001 * 109.33224 * 300.34525 * 12 10 9 28 28 H 1.08994 * 109.62178 * 309.98351 * 13 12 10 29 29 H 1.08998 * 109.61867 * 70.53716 * 13 12 10 30 30 H 1.09001 * 109.83868 * 301.42244 * 14 13 12 31 31 H 1.08996 * 109.81740 * 180.49236 * 14 13 12 32 32 H 0.96995 * 120.55166 * 136.59811 * 15 14 13 33 33 H 1.08004 * 119.07101 * 193.29217 * 16 15 14 34 34 H 1.09003 * 109.47230 * 229.99988 * 18 17 16 35 35 H 0.96697 * 114.00457 * 299.99934 * 19 18 17 36 36 H 1.48502 * 109.99956 * 180.02562 * 20 18 17 37 37 H 1.48500 * 110.00042 * 301.31537 * 20 18 17 38 38 H 1.09000 * 113.61430 * 89.07100 * 21 7 6 39 39 H 1.09001 * 113.61353 * 219.97923 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.3249 -0.5683 5 1 2.5767 -2.1886 -0.1830 6 6 4.6474 -1.4764 -0.4999 7 6 4.5677 -2.1161 -1.8960 8 1 5.3747 -1.8116 -2.5625 9 7 4.3718 -3.5676 -1.8661 10 6 4.7444 -4.3199 -2.9206 11 8 5.2416 -3.7950 -3.8943 12 6 4.5433 -5.8130 -2.8895 13 6 5.0667 -6.4183 -4.1941 14 6 4.6269 -7.8879 -4.2621 15 7 3.1569 -7.9142 -4.2498 16 6 2.4784 -7.0889 -3.3618 17 6 3.0811 -6.1145 -2.7244 18 6 2.2710 -5.2587 -1.7852 19 8 2.6606 -5.5303 -0.4374 20 14 0.4609 -5.6450 -1.9982 21 6 3.2665 -1.3229 -2.1017 22 1 2.9712 0.1224 1.0205 23 1 2.9709 0.8237 -0.6155 24 1 4.9838 -2.1634 0.2766 25 1 5.1801 -0.5255 -0.4850 26 1 3.9738 -3.9873 -1.0874 27 1 5.0955 -6.2341 -2.0493 28 1 4.6533 -5.8729 -5.0424 29 1 6.1550 -6.3606 -4.2136 30 1 5.0136 -8.4300 -3.3991 31 1 4.9970 -8.3422 -5.1811 32 1 2.6693 -8.5010 -4.8487 33 1 1.4247 -7.2544 -3.1921 34 1 2.4468 -4.2065 -2.0092 35 1 2.5315 -6.4501 -0.1684 36 1 -0.3490 -4.8070 -1.0778 37 1 0.0506 -5.3969 -3.4036 38 1 3.4223 -0.3302 -2.5240 39 1 2.4887 -1.8862 -2.6175 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_15608500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:08:27 Heat of formation + Delta-G solvation = 9.210267 kcal Electronic energy + Delta-G solvation = -22581.600705 eV Core-core repulsion = 19298.955840 eV Total energy + Delta-G solvation = -3282.644865 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.82300 -40.26273 -38.96996 -37.68340 -37.44026 -34.65810 -33.33918 -32.68341 -31.00525 -27.33926 -26.68714 -26.12159 -24.09329 -23.27872 -21.97493 -20.27030 -19.29603 -19.04511 -18.63666 -17.97454 -17.27551 -16.98021 -16.64730 -16.12862 -15.91379 -15.79432 -15.43327 -15.19675 -14.87930 -14.58091 -14.40798 -14.22802 -14.13008 -13.93949 -13.58025 -13.36156 -13.21322 -13.14098 -12.60660 -12.41071 -12.27769 -11.98204 -11.94101 -11.87229 -11.49899 -11.36406 -11.15389 -10.80739 -10.32544 -9.91524 -8.45164 -5.11629 1.21402 1.30385 1.53842 1.68310 1.75418 1.80463 1.94453 2.27962 2.66169 3.02719 3.43487 3.51568 3.67576 3.69966 3.83192 3.86579 3.94223 3.96607 4.20745 4.30445 4.35029 4.38623 4.53835 4.62883 4.69998 4.73085 4.79153 4.81302 4.84969 4.90465 4.91941 5.06386 5.14571 5.19692 5.26387 5.29858 5.42866 5.66839 6.30958 6.53755 6.60159 6.91157 6.96292 7.27573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C 0.232 3.768 3 C -0.014 4.014 4 C -0.104 4.104 5 H 0.086 0.914 6 C -0.114 4.114 7 C 0.099 3.901 8 H 0.087 0.913 9 N -0.707 5.707 10 C 0.518 3.482 11 O -0.586 6.586 12 C -0.033 4.033 13 C -0.121 4.121 14 C 0.123 3.877 15 N -0.745 5.745 16 C 0.167 3.833 17 C -0.301 4.301 18 C -0.056 4.056 19 O -0.554 6.554 20 Si 0.751 3.249 21 C -0.157 4.157 22 H 0.147 0.853 23 H 0.140 0.860 24 H 0.087 0.913 25 H 0.129 0.871 26 H 0.420 0.580 27 H 0.113 0.887 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.414 0.586 33 H 0.150 0.850 34 H 0.100 0.900 35 H 0.400 0.600 36 H -0.311 1.311 37 H -0.301 1.301 38 H 0.112 0.888 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.500 -5.930 3.124 8.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C -0.084 4.084 3 C -0.053 4.053 4 C -0.124 4.124 5 H 0.105 0.895 6 C -0.152 4.152 7 C -0.007 4.007 8 H 0.105 0.895 9 N -0.363 5.363 10 C 0.306 3.694 11 O -0.466 6.466 12 C -0.054 4.054 13 C -0.160 4.160 14 C -0.001 4.001 15 N -0.375 5.375 16 C 0.044 3.956 17 C -0.312 4.312 18 C -0.169 4.169 19 O -0.363 6.363 20 Si 0.661 3.339 21 C -0.195 4.195 22 H 0.165 0.835 23 H 0.158 0.842 24 H 0.106 0.894 25 H 0.147 0.853 26 H 0.262 0.738 27 H 0.130 0.870 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.250 0.750 33 H 0.167 0.833 34 H 0.117 0.883 35 H 0.251 0.749 36 H -0.240 1.240 37 H -0.229 1.229 38 H 0.130 0.870 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.656 -4.657 2.251 5.815 hybrid contribution 0.016 0.246 -0.384 0.457 sum 2.672 -4.411 1.867 5.485 Atomic orbital electron populations 1.81298 1.15839 1.10907 1.11577 1.30174 0.96235 0.91111 0.90895 1.19741 0.78207 0.99931 1.07451 1.22576 0.97670 0.97069 0.95061 0.89528 1.23313 0.94086 1.03053 0.94715 1.21992 0.98242 0.80121 1.00310 0.89487 1.46306 1.62740 1.07167 1.20050 1.21146 0.75829 0.90481 0.81930 1.90669 1.45899 1.75378 1.34656 1.19681 0.95362 0.89833 1.00494 1.21709 1.01345 0.96897 0.96055 1.21698 0.80086 0.94704 1.03604 1.44706 1.06049 1.45289 1.41444 1.20556 0.96083 0.89554 0.89374 1.20411 0.95533 1.03925 1.11358 1.24906 1.07536 1.00672 0.83754 1.86264 1.88357 1.35719 1.25929 0.94639 0.73918 0.89065 0.76277 1.23730 0.97304 1.01874 0.96636 0.83530 0.84184 0.89419 0.85293 0.73791 0.86952 0.93122 0.90286 0.90433 0.88431 0.74983 0.83323 0.88299 0.74880 1.24016 1.22947 0.86984 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -6.47 18.54 20.01 0.37 -6.10 16 2 C 0.23 0.68 15.42 89.44 1.38 2.06 16 3 C -0.01 0.12 5.54 28.79 0.16 0.28 16 4 C -0.10 0.61 3.51 -10.17 -0.04 0.58 16 5 H 0.09 -0.25 8.12 -2.39 -0.02 -0.27 16 6 C -0.11 0.93 7.38 31.12 0.23 1.16 16 7 C 0.10 -0.03 4.29 45.52 0.20 0.16 16 8 H 0.09 0.30 7.50 -2.39 -0.02 0.28 16 9 N -0.71 -1.33 3.57 -440.04 -1.57 -2.90 16 10 C 0.52 3.48 6.82 87.65 0.60 4.08 16 11 O -0.59 -8.79 15.40 -3.03 -0.05 -8.84 16 12 C -0.03 -0.03 2.75 -12.43 -0.03 -0.06 16 13 C -0.12 -0.10 4.91 30.79 0.15 0.05 16 14 C 0.12 -0.69 7.16 86.46 0.62 -0.07 16 15 N -0.74 4.32 5.83 -345.88 -2.02 2.30 16 16 C 0.17 -0.70 9.61 83.41 0.80 0.10 16 17 C -0.30 0.45 5.03 -16.76 -0.08 0.37 16 18 C -0.06 0.07 1.69 71.23 0.12 0.19 16 19 O -0.55 2.79 11.42 -148.98 -1.70 1.09 16 20 Si 0.75 -0.33 29.72 68.60 2.04 1.71 16 21 C -0.16 0.22 7.45 31.21 0.23 0.45 16 22 H 0.15 -2.13 8.14 -2.39 -0.02 -2.15 16 23 H 0.14 -1.92 7.85 -2.39 -0.02 -1.94 16 24 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 25 H 0.13 -1.66 8.10 -2.39 -0.02 -1.68 16 26 H 0.42 -0.26 5.33 -92.71 -0.49 -0.75 16 27 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.05 0.35 7.74 -2.39 -0.02 0.33 16 29 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 32 H 0.41 -3.95 8.96 -92.71 -0.83 -4.78 16 33 H 0.15 -1.22 4.49 -2.91 -0.01 -1.23 16 34 H 0.10 0.28 5.32 -2.39 -0.01 0.27 16 35 H 0.40 -5.13 8.70 -74.06 -0.64 -5.77 16 36 H -0.31 -2.81 7.11 99.48 0.71 -2.10 16 37 H -0.30 -1.95 7.11 99.48 0.71 -1.25 16 38 H 0.11 -0.51 7.90 -2.39 -0.02 -0.53 16 39 H 0.04 0.18 8.14 -2.39 -0.02 0.16 16 Total: 0.00 -27.82 317.25 0.58 -27.24 By element: Atomic # 1 Polarization: -23.03 SS G_CDS: -0.83 Total: -23.86 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 4.33 Total: 9.36 kcal Atomic # 7 Polarization: -3.48 SS G_CDS: -3.22 Total: -6.70 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -1.75 Total: -7.75 kcal Atomic # 14 Polarization: -0.33 SS G_CDS: 2.04 Total: 1.71 kcal Total: -27.82 0.58 -27.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_15608500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.454 kcal (2) G-P(sol) polarization free energy of solvation -27.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds