Wall clock time and date at job start Sun Mar 7 2021 06:08:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13609 * 1
3 3 C 1.47192 * 179.97438 * 2 1
4 4 C 1.53003 * 109.47083 * 302.48605 * 3 2 1
5 5 H 1.09004 * 112.85164 * 316.19322 * 4 3 2
6 6 C 1.53787 * 113.61385 * 185.00379 * 4 3 2
7 7 C 1.53784 * 87.07923 * 220.01697 * 6 4 3
8 8 H 1.08993 * 113.61313 * 139.97752 * 7 6 4
9 9 N 1.46501 * 113.61123 * 270.88223 * 7 6 4
10 10 C 1.34781 * 119.99552 * 204.99529 * 9 7 6
11 11 O 1.21550 * 120.00427 * 0.02562 * 10 9 7
12 12 C 1.47849 * 119.99616 * 179.97438 * 10 9 7
13 13 C 1.39552 * 120.14030 * 180.02562 * 12 10 9
14 14 C 1.37984 * 119.85244 * 179.97438 * 13 12 10
15 15 C 1.50698 * 119.92981 * 180.02562 * 14 13 12
16 16 O 1.42901 * 109.46895 * 90.00088 * 15 14 13
17 17 C 1.35905 * 116.99731 * 179.97438 * 16 15 14
18 18 C 1.38707 * 120.05203 * 179.97438 * 17 16 15
19 19 C 1.38173 * 119.94159 * 180.02562 * 18 17 16
20 20 C 1.50697 * 119.97120 * 180.02562 * 19 18 17
21 21 O 1.42889 * 109.47485 * 300.00211 * 20 19 18
22 22 Si 1.86305 * 109.46987 * 179.97438 * 20 19 18
23 23 C 1.38245 * 120.05560 * 0.02562 * 19 18 17
24 24 C 1.38292 * 120.11219 * 0.02562 * 23 19 18
25 25 C 1.38124 * 120.05209 * 359.68765 * 24 23 19
26 26 C 1.38340 * 120.14078 * 359.97438 * 14 13 12
27 27 C 1.38380 * 120.29317 * 0.02562 * 26 14 13
28 28 C 1.37932 * 120.14724 * 359.74214 * 27 26 14
29 29 C 1.53778 * 113.61726 * 87.50629 * 4 3 2
30 30 H 1.08996 * 109.47111 * 182.48669 * 3 2 1
31 31 H 1.09005 * 109.47589 * 62.48252 * 3 2 1
32 32 H 1.09004 * 113.61202 * 334.56449 * 6 4 3
33 33 H 1.08994 * 113.61447 * 105.46881 * 6 4 3
34 34 H 0.96998 * 120.00259 * 25.00269 * 9 7 6
35 35 H 1.08001 * 120.08002 * 359.96226 * 13 12 10
36 36 H 1.08995 * 109.47050 * 210.00474 * 15 14 13
37 37 H 1.09000 * 109.46843 * 330.00403 * 15 14 13
38 38 H 1.07995 * 120.03331 * 359.97438 * 18 17 16
39 39 H 1.09005 * 109.46952 * 60.00347 * 20 19 18
40 40 H 0.96701 * 114.00289 * 300.00276 * 21 20 19
41 41 H 1.48498 * 109.99773 * 179.97438 * 22 20 19
42 42 H 1.48493 * 110.00269 * 301.32331 * 22 20 19
43 43 H 1.08000 * 119.94563 * 180.02562 * 23 19 18
44 44 H 1.07990 * 119.97248 * 179.97438 * 24 23 19
45 45 H 1.08005 * 120.02889 * 180.32286 * 25 24 23
46 46 H 1.08000 * 119.85294 * 180.02562 * 26 14 13
47 47 H 1.08008 * 119.92415 * 180.02562 * 27 26 14
48 48 H 1.07997 * 120.07861 * 180.27780 * 28 27 26
49 49 H 1.08999 * 113.61111 * 254.53134 * 29 4 3
50 50 H 1.08999 * 113.61280 * 25.34517 * 29 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1361 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 6 3.1183 -0.7739 1.2168
5 1 2.5759 -0.5317 2.1307
6 6 4.6471 -0.7302 1.3780
7 6 4.5678 -2.2113 1.7842
8 1 5.3743 -2.8199 1.3754
9 7 4.3712 -2.4159 3.2215
10 6 4.7721 -3.5656 3.7995
11 8 5.2971 -4.4324 3.1284
12 6 4.5742 -3.7718 5.2501
13 6 4.9886 -4.9608 5.8518
14 6 4.8015 -5.1468 7.2062
15 6 5.2488 -6.4299 7.8578
16 8 6.5988 -6.2912 8.3054
17 6 7.1583 -7.3663 8.9205
18 6 8.4656 -7.3014 9.3796
19 6 9.0323 -8.3959 10.0041
20 6 10.4523 -8.3259 10.5037
21 8 11.3303 -8.0602 9.4081
22 14 10.9144 -9.9501 11.2909
23 6 8.2978 -9.5551 10.1709
24 6 6.9946 -9.6227 9.7131
25 6 6.4216 -8.5293 9.0935
26 6 4.2051 -4.1575 7.9673
27 6 3.7919 -2.9762 7.3768
28 6 3.9774 -2.7756 6.0248
29 6 3.2666 -2.2841 0.9680
30 1 2.9709 1.0275 0.0446
31 1 2.9716 -0.4740 -0.9114
32 1 5.1802 -0.5620 0.4423
33 1 4.9828 -0.0745 2.1814
34 1 3.9525 -1.7240 3.7571
35 1 5.4545 -5.7338 5.2587
36 1 4.6044 -6.6489 8.7091
37 1 5.1872 -7.2445 7.1362
38 1 9.0403 -6.3965 9.2484
39 1 10.5392 -7.5276 11.2409
40 1 11.3054 -8.7313 8.7124
41 1 12.3129 -9.8942 11.7872
42 1 9.9888 -10.2528 12.4119
43 1 8.7424 -10.4094 10.6597
44 1 6.4230 -10.5295 9.8442
45 1 5.4021 -8.5807 8.7407
46 1 4.0613 -4.3078 9.0271
47 1 3.3273 -2.2076 7.9768
48 1 3.6586 -1.8515 5.5660
49 1 2.4878 -2.8829 1.4402
50 1 3.4208 -2.5409 -0.0801
There are 69 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 69
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_16534922_4549630.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 06:08:47
Heat of formation + Delta-G solvation = 5.738736 kcal
Electronic energy + Delta-G solvation = -32001.594552 eV
Core-core repulsion = 27540.648407 eV
Total energy + Delta-G solvation = -4460.946145 eV
No. of doubly occupied orbitals = 69
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 379.162 amu
Computer time = 1.53 seconds
Orbital eigenvalues (eV)
-41.69547 -41.30345 -40.33124 -39.37485 -38.78056 -37.47408 -37.25265 -34.91693
-33.38399 -32.45983 -32.27309 -31.15604 -30.79826 -27.76507 -26.62996 -26.61021
-25.66640 -23.91636 -23.66264 -23.15297 -22.22276 -21.45162 -20.30064 -19.22651
-19.01883 -18.41239 -17.83440 -17.50594 -17.22949 -17.15353 -16.92823 -16.80905
-16.27026 -16.14754 -16.13329 -15.72677 -15.67177 -15.43460 -15.26581 -14.92615
-14.82399 -14.57809 -14.43122 -14.20007 -14.04568 -13.90662 -13.75859 -13.49975
-13.46766 -13.31765 -13.07666 -12.92564 -12.80605 -12.59814 -12.35155 -12.17983
-11.99563 -11.98086 -11.86529 -11.64932 -11.45343 -11.14060 -11.09606 -10.51940
-10.25765 -10.05546 -9.93812 -9.92403 -9.26969 -4.98454 -0.28923 0.13334
0.19982 0.39216 1.29935 1.64439 1.65768 1.83652 1.88787 1.95234
2.01530 2.24214 2.66991 2.85046 3.09313 3.44790 3.52563 3.55776
3.57496 3.67186 3.72273 3.75280 3.83898 3.91984 3.96225 3.99298
4.07109 4.08328 4.16765 4.22704 4.24488 4.39750 4.42237 4.46560
4.51822 4.64368 4.65234 4.72846 4.77537 4.86854 4.87649 4.93162
4.97352 4.97467 5.11078 5.15944 5.20107 5.24632 5.26470 5.28693
5.36402 5.37509 5.43868 5.63480 5.70708 5.76349 6.35796 6.43089
6.68511 6.73674 7.10784
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.518 5.518
2 C 0.233 3.767
3 C -0.015 4.015
4 C -0.100 4.100
5 H 0.098 0.902
6 C -0.116 4.116
7 C 0.102 3.898
8 H 0.086 0.914
9 N -0.695 5.695
10 C 0.558 3.442
11 O -0.580 6.580
12 C -0.156 4.156
13 C -0.054 4.054
14 C -0.114 4.114
15 C 0.099 3.901
16 O -0.328 6.328
17 C 0.116 3.884
18 C -0.147 4.147
19 C -0.084 4.084
20 C -0.082 4.082
21 O -0.557 6.557
22 Si 0.789 3.211
23 C -0.159 4.159
24 C -0.072 4.072
25 C -0.208 4.208
26 C -0.070 4.070
27 C -0.127 4.127
28 C -0.069 4.069
29 C -0.154 4.154
30 H 0.145 0.855
31 H 0.136 0.864
32 H 0.125 0.875
33 H 0.091 0.909
34 H 0.414 0.586
35 H 0.120 0.880
36 H 0.094 0.906
37 H 0.080 0.920
38 H 0.118 0.882
39 H 0.104 0.896
40 H 0.395 0.605
41 H -0.299 1.299
42 H -0.281 1.281
43 H 0.148 0.852
44 H 0.157 0.843
45 H 0.148 0.852
46 H 0.148 0.852
47 H 0.163 0.837
48 H 0.159 0.841
49 H 0.050 0.950
50 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.127 1.427 0.738 1.612
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.197 5.197
2 C -0.083 4.083
3 C -0.055 4.055
4 C -0.119 4.119
5 H 0.116 0.884
6 C -0.154 4.154
7 C -0.003 4.003
8 H 0.104 0.896
9 N -0.346 5.346
10 C 0.347 3.653
11 O -0.461 6.461
12 C -0.159 4.159
13 C -0.073 4.073
14 C -0.114 4.114
15 C 0.025 3.975
16 O -0.242 6.242
17 C 0.071 3.929
18 C -0.166 4.166
19 C -0.084 4.084
20 C -0.191 4.191
21 O -0.365 6.365
22 Si 0.694 3.306
23 C -0.177 4.177
24 C -0.090 4.090
25 C -0.227 4.227
26 C -0.089 4.089
27 C -0.144 4.144
28 C -0.087 4.087
29 C -0.193 4.193
30 H 0.163 0.837
31 H 0.154 0.846
32 H 0.143 0.857
33 H 0.110 0.890
34 H 0.253 0.747
35 H 0.138 0.862
36 H 0.112 0.888
37 H 0.098 0.902
38 H 0.136 0.864
39 H 0.122 0.878
40 H 0.245 0.755
41 H -0.228 1.228
42 H -0.207 1.207
43 H 0.165 0.835
44 H 0.175 0.825
45 H 0.166 0.834
46 H 0.166 0.834
47 H 0.181 0.819
48 H 0.176 0.824
49 H 0.069 0.931
50 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges -0.754 1.164 1.255 1.870
hybrid contribution -0.268 0.655 0.216 0.740
sum -1.021 1.819 1.471 2.553
Atomic orbital electron populations
1.81323 1.15857 1.11510 1.10973 1.30126 0.96149 0.90879 0.91113
1.19724 0.78264 1.06041 1.01427 1.22543 0.97215 0.94101 0.98075
0.88409 1.23348 0.94520 0.93033 1.04470 1.22016 0.98725 0.99839
0.79756 0.89601 1.45487 1.61445 1.18048 1.09647 1.18513 0.77236
0.82064 0.87498 1.90770 1.45271 1.44421 1.65629 1.19918 1.05987
0.97149 0.92878 1.21180 0.95181 0.96479 0.94484 1.19527 1.01930
0.96871 0.93076 1.21737 0.80916 0.95464 0.99376 1.86132 1.29575
1.36447 1.72085 1.19186 0.92954 0.87043 0.93712 1.20295 0.93073
1.00107 1.03151 1.20227 0.96556 0.93545 0.98118 1.25364 0.86945
1.12932 0.93863 1.86466 1.62696 1.53793 1.33561 0.93494 0.75836
0.79403 0.81882 1.21188 0.95620 0.97472 1.03376 1.21290 0.94674
0.98579 0.94481 1.21579 1.01782 0.93421 1.05893 1.21642 0.93998
0.92321 1.00897 1.21516 1.00036 0.98039 0.94833 1.21687 0.94640
0.98005 0.94372 1.23652 0.97077 0.96814 1.01760 0.83702 0.84608
0.85716 0.88998 0.74721 0.86201 0.88770 0.90229 0.86431 0.87825
0.75485 1.22757 1.20741 0.83452 0.82489 0.83437 0.83379 0.81947
0.82360 0.93080 0.87362
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.52 -4.54 18.54 20.00 0.37 -4.17 16
2 C 0.23 -0.25 15.42 89.44 1.38 1.12 16
3 C -0.02 0.20 5.54 28.79 0.16 0.35 16
4 C -0.10 1.14 3.49 -10.27 -0.04 1.10 16
5 H 0.10 -1.09 8.12 -2.39 -0.02 -1.10 16
6 C -0.12 1.46 7.39 31.12 0.23 1.69 16
7 C 0.10 -0.45 4.32 45.52 0.20 -0.26 16
8 H 0.09 0.05 7.46 -2.39 -0.02 0.03 16
9 N -0.69 1.98 5.21 -442.90 -2.31 -0.33 16
10 C 0.56 3.01 7.77 86.79 0.67 3.68 16
11 O -0.58 -8.34 15.95 -3.87 -0.06 -8.40 16
12 C -0.16 -0.43 5.87 -20.09 -0.12 -0.55 16
13 C -0.05 -0.27 9.24 22.53 0.21 -0.07 16
14 C -0.11 -0.19 5.50 -19.90 -0.11 -0.30 16
15 C 0.10 0.03 4.86 71.24 0.35 0.38 16
16 O -0.33 -2.03 10.12 -92.48 -0.94 -2.97 16
17 C 0.12 0.60 6.69 22.51 0.15 0.75 16
18 C -0.15 -0.92 9.55 22.37 0.21 -0.71 16
19 C -0.08 -0.22 5.39 -19.88 -0.11 -0.32 16
20 C -0.08 -0.13 2.82 71.23 0.20 0.07 16
21 O -0.56 -1.62 12.77 -148.98 -1.90 -3.52 16
22 Si 0.79 -1.37 29.79 68.60 2.04 0.68 16
23 C -0.16 0.13 8.67 22.28 0.19 0.32 16
24 C -0.07 0.12 10.04 22.26 0.22 0.35 16
25 C -0.21 -0.11 9.04 22.37 0.20 0.09 16
26 C -0.07 0.16 9.69 22.33 0.22 0.37 16
27 C -0.13 0.62 10.03 22.23 0.22 0.84 16
28 C -0.07 0.27 9.54 22.52 0.21 0.49 16
29 C -0.15 0.93 7.43 31.12 0.23 1.16 16
30 H 0.15 -2.62 8.14 -2.39 -0.02 -2.64 16
31 H 0.14 -2.26 7.84 -2.38 -0.02 -2.28 16
32 H 0.12 -1.98 8.10 -2.39 -0.02 -2.00 16
33 H 0.09 -1.28 8.14 -2.39 -0.02 -1.30 16
34 H 0.41 -3.81 6.74 -92.71 -0.62 -4.43 16
35 H 0.12 0.95 7.65 -2.91 -0.02 0.93 16
36 H 0.09 -0.39 7.59 -2.39 -0.02 -0.40 16
37 H 0.08 -0.09 7.62 -2.39 -0.02 -0.11 16
38 H 0.12 0.98 8.06 -2.91 -0.02 0.96 16
39 H 0.10 0.32 7.96 -2.38 -0.02 0.30 16
40 H 0.40 -2.07 8.70 -74.06 -0.64 -2.72 16
41 H -0.30 -1.71 7.11 99.48 0.71 -1.00 16
42 H -0.28 -0.59 7.11 99.48 0.71 0.12 16
43 H 0.15 -0.80 4.87 -2.91 -0.01 -0.81 16
44 H 0.16 -1.15 8.06 -2.92 -0.02 -1.18 16
45 H 0.15 -0.56 6.30 -2.91 -0.02 -0.58 16
46 H 0.15 -0.91 8.06 -2.91 -0.02 -0.93 16
47 H 0.16 -1.71 8.06 -2.91 -0.02 -1.74 16
48 H 0.16 -1.76 6.41 -2.91 -0.02 -1.78 16
49 H 0.05 -0.06 8.14 -2.39 -0.02 -0.07 16
50 H 0.11 -0.87 7.89 -2.39 -0.02 -0.89 16
Total: 0.00 -33.63 424.80 1.87 -31.76
By element:
Atomic # 1 Polarization: -23.40 SS G_CDS: -0.23 Total: -23.63 kcal
Atomic # 6 Polarization: 5.69 SS G_CDS: 4.89 Total: 10.58 kcal
Atomic # 7 Polarization: -2.56 SS G_CDS: -1.94 Total: -4.50 kcal
Atomic # 8 Polarization: -11.99 SS G_CDS: -2.90 Total: -14.89 kcal
Atomic # 14 Polarization: -1.37 SS G_CDS: 2.04 Total: 0.68 kcal
Total: -33.63 1.87 -31.76 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16534922_4549630.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.500 kcal
(2) G-P(sol) polarization free energy of solvation -33.630 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.870 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.761 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.739 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.54 seconds