Wall clock time and date at job start Sun Mar 7 2021 06:09:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.35979 * 116.99841 * 2 1
4 4 C 1.38686 * 119.99795 * 180.02562 * 3 2 1
5 5 C 1.38153 * 119.99920 * 179.97438 * 4 3 2
6 6 C 1.50698 * 119.99660 * 180.02562 * 5 4 3
7 7 O 1.42900 * 109.46964 * 105.00222 * 6 5 4
8 8 Si 1.86293 * 109.47319 * 345.00169 * 6 5 4
9 9 C 1.38678 * 119.99937 * 359.76967 * 5 4 3
10 10 O 1.35980 * 119.99753 * 180.23788 * 9 5 4
11 11 C 1.42902 * 116.99994 * 180.25107 * 10 9 5
12 12 C 1.50700 * 109.47418 * 179.97438 * 11 10 9
13 13 O 1.21281 * 119.99554 * 359.97438 * 12 11 10
14 14 N 1.34776 * 119.99941 * 179.97438 * 12 11 10
15 15 C 1.46498 * 119.99883 * 179.97438 * 14 12 11
16 16 H 1.09009 * 112.84923 * 23.80885 * 15 14 12
17 17 C 1.53779 * 113.61605 * 155.00153 * 15 14 12
18 18 C 1.53773 * 87.08061 * 89.11879 * 17 15 14
19 19 H 1.09001 * 113.61837 * 270.79821 * 18 17 15
20 20 C 1.53003 * 113.61740 * 139.98450 * 18 17 15
21 21 C 1.47191 * 109.47624 * 175.00024 * 20 18 17
22 22 N 9.12472 * 123.99088 * 207.85935 * 10 1 2
23 23 C 1.53778 * 87.08446 * 25.43573 * 18 17 15
24 24 C 1.38717 * 120.00102 * 0.48328 * 9 5 4
25 25 C 1.38118 * 119.99870 * 359.49269 * 24 9 5
26 26 H 1.09001 * 109.47122 * 180.02562 * 1 2 3
27 27 H 1.08997 * 109.46869 * 300.00382 * 1 2 3
28 28 H 1.09002 * 109.47158 * 59.99687 * 1 2 3
29 29 H 1.08002 * 119.99739 * 359.95524 * 4 3 2
30 30 H 1.08996 * 109.46931 * 224.99628 * 6 5 4
31 31 H 0.96703 * 114.00295 * 179.97438 * 7 6 5
32 32 H 1.48508 * 109.99860 * 298.67835 * 8 6 5
33 33 H 1.48500 * 110.00345 * 59.99804 * 8 6 5
34 34 H 1.09003 * 109.46677 * 299.99594 * 11 10 9
35 35 H 1.09000 * 109.47111 * 59.98887 * 11 10 9
36 36 H 0.97003 * 120.00313 * 0.02562 * 14 12 11
37 37 H 1.08994 * 113.61705 * 203.66986 * 17 15 14
38 38 H 1.09004 * 113.61106 * 334.48389 * 17 15 14
39 39 H 1.08997 * 109.46888 * 295.00401 * 20 18 17
40 40 H 1.09001 * 109.46954 * 54.99993 * 20 18 17
41 41 H 1.09001 * 113.61552 * 220.02684 * 23 18 17
42 42 H 1.08995 * 113.61534 * 89.11322 * 23 18 17
43 43 H 1.08002 * 120.00341 * 179.77596 * 24 9 5
44 44 H 1.07999 * 120.00024 * 180.25004 * 25 24 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2116 0.0000
4 6 3.4313 1.2842 -0.0005
5 6 4.0585 2.5151 -0.0011
6 6 5.5634 2.5939 -0.0022
7 8 6.0198 2.9670 -1.3040
8 14 6.2727 0.9322 0.4518
9 6 3.3032 3.6782 -0.0059
10 8 3.9206 4.8897 -0.0113
11 6 3.0807 6.0459 -0.0105
12 6 3.9348 7.2874 -0.0164
13 8 5.1438 7.1915 -0.0203
14 7 3.3552 8.5041 -0.0172
15 6 4.1856 9.7110 -0.0223
16 1 5.1814 9.5380 -0.4305
17 6 3.4809 10.9411 -0.6182
18 6 2.9671 11.2363 0.8008
19 1 2.0153 10.7566 1.0292
20 6 2.9847 12.7229 1.1622
21 6 2.3668 12.9139 2.4844
22 7 1.8932 13.0619 3.5052
23 6 4.1898 10.4617 1.3199
24 6 1.9179 3.6056 -0.0001
25 6 1.2909 2.3750 0.0000
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5139 0.8899
28 1 -0.3633 0.5139 -0.8900
29 1 4.0195 0.3784 -0.0002
30 1 5.8888 3.3386 0.7241
31 1 6.9814 3.0376 -1.3784
32 1 5.8311 0.5473 1.8165
33 1 5.8364 -0.0920 -0.5309
34 1 2.4478 6.0357 -0.8979
35 1 2.4550 6.0398 0.8820
36 1 2.3882 8.5808 -0.0137
37 1 4.1683 11.6961 -0.9995
38 1 2.6912 10.6912 -1.3269
39 1 4.0147 13.0784 1.1876
40 1 2.4246 13.2851 0.4149
41 1 3.9715 9.8246 2.1770
42 1 5.0711 11.0856 1.4684
43 1 1.3297 4.5114 -0.0002
44 1 0.2124 2.3185 0.0004
There are 61 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 61
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_22_16534922_4974302.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 06:09:16
Heat of formation + Delta-G solvation = -48.054239 kcal
Electronic energy + Delta-G solvation = -27689.958909 eV
Core-core repulsion = 23576.440114 eV
Total energy + Delta-G solvation = -4113.518795 eV
No. of doubly occupied orbitals = 61
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 333.145 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-41.83376 -41.37975 -40.24331 -39.38595 -37.96109 -37.45480 -36.88597 -34.77984
-32.91592 -31.70224 -30.90930 -29.30147 -28.07759 -26.95575 -26.50673 -24.79146
-23.63462 -22.31458 -21.93456 -20.53210 -19.41837 -18.94297 -18.65704 -18.30997
-18.26418 -17.53939 -17.43220 -17.07078 -16.70480 -16.27600 -16.15602 -15.99893
-15.55699 -15.45203 -15.34501 -15.14070 -14.78353 -14.44843 -14.09952 -14.05220
-13.90629 -13.79206 -13.67723 -13.64303 -13.48435 -13.24805 -13.07667 -12.68553
-12.59205 -12.54246 -12.20322 -11.80899 -11.72775 -11.71482 -11.48657 -11.42856
-10.92843 -10.23548 -10.15866 -10.07579 -8.79019 -4.88111 0.05026 0.37948
1.38722 1.39355 1.43802 1.74090 1.76609 1.81199 2.06122 2.23572
2.51383 2.54825 2.83991 3.21566 3.37414 3.39067 3.49902 3.60008
3.63971 3.64730 3.75474 3.86151 3.88886 4.00663 4.02499 4.07393
4.15859 4.21120 4.28706 4.31949 4.37806 4.45811 4.50545 4.52215
4.52924 4.62633 4.66466 4.81905 4.83758 4.93439 5.03027 5.12089
5.18399 5.37822 5.41756 6.11623 6.27780 6.40000 6.57876 6.82433
7.04818
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.317 6.317
3 C 0.100 3.900
4 C -0.116 4.116
5 C -0.062 4.062
6 C -0.061 4.061
7 O -0.540 6.540
8 Si 0.682 3.318
9 C 0.119 3.881
10 O -0.276 6.276
11 C 0.038 3.962
12 C 0.520 3.480
13 O -0.506 6.506
14 N -0.713 5.713
15 C 0.121 3.879
16 H 0.109 0.891
17 C -0.136 4.136
18 C -0.111 4.111
19 H 0.097 0.903
20 C -0.018 4.018
21 C 0.202 3.798
22 N -0.435 5.435
23 C -0.150 4.150
24 C -0.169 4.169
25 C -0.161 4.161
26 H 0.103 0.897
27 H 0.056 0.944
28 H 0.057 0.943
29 H 0.138 0.862
30 H 0.078 0.922
31 H 0.381 0.619
32 H -0.254 1.254
33 H -0.248 1.248
34 H 0.094 0.906
35 H 0.092 0.908
36 H 0.402 0.598
37 H 0.105 0.895
38 H 0.080 0.920
39 H 0.112 0.888
40 H 0.113 0.887
41 H 0.074 0.926
42 H 0.099 0.901
43 H 0.135 0.865
44 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.678 2.241 -3.358 4.372
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.230 6.230
3 C 0.055 3.945
4 C -0.134 4.134
5 C -0.062 4.062
6 C -0.172 4.172
7 O -0.346 6.346
8 Si 0.583 3.417
9 C 0.073 3.927
10 O -0.188 6.188
11 C -0.041 4.041
12 C 0.305 3.695
13 O -0.378 6.378
14 N -0.367 5.367
15 C 0.016 3.984
16 H 0.127 0.873
17 C -0.174 4.174
18 C -0.130 4.130
19 H 0.115 0.885
20 C -0.058 4.058
21 C -0.116 4.116
22 N -0.112 5.112
23 C -0.189 4.189
24 C -0.188 4.188
25 C -0.180 4.180
26 H 0.121 0.879
27 H 0.075 0.925
28 H 0.075 0.925
29 H 0.155 0.845
30 H 0.096 0.904
31 H 0.229 0.771
32 H -0.178 1.178
33 H -0.173 1.173
34 H 0.112 0.888
35 H 0.110 0.890
36 H 0.237 0.763
37 H 0.123 0.877
38 H 0.099 0.901
39 H 0.130 0.870
40 H 0.131 0.869
41 H 0.092 0.908
42 H 0.118 0.882
43 H 0.153 0.847
44 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -2.012 1.394 -1.719 2.991
hybrid contribution -1.514 0.633 -0.302 1.669
sum -3.526 2.027 -2.021 4.542
Atomic orbital electron populations
1.23105 0.77977 1.04381 1.01392 1.86104 1.21647 1.26277 1.89018
1.18719 0.91709 0.84650 0.99432 1.20089 0.92021 0.96951 1.04361
1.18407 0.94076 0.89800 1.03965 1.24490 0.92419 1.10876 0.89392
1.86493 1.27196 1.92573 1.28310 0.95332 0.90606 0.75722 0.80021
1.18569 0.90457 0.84842 0.98800 1.86222 1.33186 1.10693 1.88734
1.22453 0.93262 0.84478 1.03873 1.19994 0.88853 0.84049 0.76626
1.90787 1.14089 1.86399 1.46561 1.45477 1.10180 1.04658 1.76340
1.21827 0.96185 0.83282 0.97131 0.87253 1.23386 1.00942 0.97302
0.95778 1.22636 0.99698 0.93416 0.97291 0.88459 1.19343 1.01935
0.97914 0.86574 1.29177 0.93817 0.93547 0.95015 1.81254 1.09487
1.08182 1.12227 1.23600 0.98284 0.99016 0.97986 1.21053 0.92858
0.98705 1.06193 1.21081 1.00322 0.91432 1.05124 0.87897 0.92530
0.92484 0.84510 0.90395 0.77125 1.17831 1.17346 0.88834 0.88991
0.76319 0.87666 0.90111 0.86979 0.86897 0.90772 0.88245 0.84688
0.84578
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 -0.03 9.81 101.05 0.99 0.96 16
2 O -0.32 -0.99 10.50 -19.67 -0.21 -1.20 16
3 C 0.10 0.34 6.69 -39.24 -0.26 0.08 16
4 C -0.12 -0.50 8.59 -39.45 -0.34 -0.84 16
5 C -0.06 -0.26 5.30 -104.49 -0.55 -0.81 16
6 C -0.06 -0.16 2.36 36.00 0.09 -0.07 16
7 O -0.54 -1.58 12.86 -35.23 -0.45 -2.04 16
8 Si 0.68 0.50 30.20 -169.99 -5.13 -4.63 16
9 C 0.12 0.40 6.66 -39.24 -0.26 0.14 16
10 O -0.28 -0.96 9.00 -39.59 -0.36 -1.32 16
11 C 0.04 -0.03 5.22 36.01 0.19 0.16 16
12 C 0.52 0.38 7.91 -10.99 -0.09 0.29 16
13 O -0.51 -2.79 16.10 -14.35 -0.23 -3.02 16
14 N -0.71 2.05 5.26 -53.01 -0.28 1.77 16
15 C 0.12 -0.37 4.32 -67.12 -0.29 -0.66 16
16 H 0.11 -0.12 7.46 -51.92 -0.39 -0.50 16
17 C -0.14 0.79 7.39 -25.92 -0.19 0.60 16
18 C -0.11 0.59 3.49 -89.81 -0.31 0.28 16
19 H 0.10 -0.51 8.12 -51.93 -0.42 -0.93 16
20 C -0.02 0.10 5.54 -29.52 -0.16 -0.07 16
21 C 0.20 -0.10 15.41 -20.80 -0.32 -0.42 16
22 N -0.43 -1.63 18.53 42.11 0.78 -0.84 16
23 C -0.15 0.53 7.43 -25.92 -0.19 0.34 16
24 C -0.17 -0.17 9.03 -39.45 -0.36 -0.53 16
25 C -0.16 -0.21 9.03 -39.45 -0.36 -0.56 16
26 H 0.10 -0.26 8.14 -51.93 -0.42 -0.68 16
27 H 0.06 -0.12 7.66 -51.93 -0.40 -0.52 16
28 H 0.06 -0.12 7.66 -51.93 -0.40 -0.51 16
29 H 0.14 0.57 4.90 -52.49 -0.26 0.32 16
30 H 0.08 0.18 7.83 -51.93 -0.41 -0.23 16
31 H 0.38 -0.76 8.74 45.56 0.40 -0.36 16
32 H -0.25 -0.79 7.11 56.52 0.40 -0.39 16
33 H -0.25 -0.83 6.75 56.52 0.38 -0.45 16
34 H 0.09 -0.30 7.66 -51.93 -0.40 -0.69 16
35 H 0.09 -0.31 7.66 -51.93 -0.40 -0.71 16
36 H 0.40 -2.36 8.70 -40.82 -0.36 -2.71 16
37 H 0.10 -0.72 8.10 -51.93 -0.42 -1.14 16
38 H 0.08 -0.50 8.14 -51.93 -0.42 -0.92 16
39 H 0.11 -0.78 7.84 -51.93 -0.41 -1.19 16
40 H 0.11 -0.83 8.14 -51.93 -0.42 -1.25 16
41 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16
42 H 0.10 -0.42 7.90 -51.93 -0.41 -0.83 16
43 H 0.14 -0.31 6.29 -52.49 -0.33 -0.64 16
44 H 0.14 -0.18 6.29 -52.49 -0.33 -0.51 16
LS Contribution 375.87 15.07 5.66 5.66
Total: 0.00 -13.69 375.87 -8.47 -22.16
By element:
Atomic # 1 Polarization: -9.60 SS G_CDS: -5.83 Total: -15.43 kcal
Atomic # 6 Polarization: 1.31 SS G_CDS: -2.42 Total: -1.12 kcal
Atomic # 7 Polarization: 0.43 SS G_CDS: 0.50 Total: 0.93 kcal
Atomic # 8 Polarization: -6.33 SS G_CDS: -1.25 Total: -7.57 kcal
Atomic # 14 Polarization: 0.50 SS G_CDS: -5.13 Total: -4.63 kcal
Total LS contribution 5.66 Total: 5.66 kcal
Total: -13.69 -8.47 -22.16 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16534922_4974302.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.895 kcal
(2) G-P(sol) polarization free energy of solvation -13.694 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.589 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.160 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.054 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds