Wall clock time and date at job start Sun Mar 7 2021 06:09:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.35962 * 117.00173 * 2 1
4 4 C 1.39450 * 120.12498 * 179.97438 * 3 2 1
5 5 O 1.34771 * 133.23912 * 0.39140 * 4 3 2
6 6 C 1.34931 * 110.84001 * 180.09765 * 5 4 3
7 7 C 1.46996 * 125.13942 * 179.81338 * 6 5 4
8 8 O 1.21651 * 119.99854 * 179.69992 * 7 6 5
9 9 N 1.34776 * 120.00035 * 359.70433 * 7 6 5
10 10 C 1.46499 * 119.99999 * 179.97438 * 9 7 6
11 11 H 1.08993 * 112.84964 * 23.80229 * 10 9 7
12 12 C 1.53783 * 113.61210 * 154.99616 * 10 9 7
13 13 C 1.53786 * 87.08050 * 89.20097 * 12 10 9
14 14 H 1.09002 * 113.61357 * 270.88070 * 13 12 10
15 15 C 1.53003 * 113.61503 * 140.06140 * 13 12 10
16 16 C 1.47202 * 109.46984 * 176.52528 * 15 13 12
17 17 N 9.24715 * 132.37205 * 211.41189 * 2 1 3
18 18 C 1.53781 * 87.17350 * 25.47154 * 13 12 10
19 19 C 1.35810 * 109.71772 * 359.55727 * 6 5 4
20 20 C 1.40607 * 119.14030 * 180.02562 * 4 3 2
21 21 C 1.39783 * 120.11594 * 0.02562 * 20 4 3
22 22 C 1.50702 * 120.08881 * 179.97438 * 21 20 4
23 23 O 1.42901 * 109.47076 * 284.99038 * 22 21 20
24 24 Si 1.86305 * 109.46869 * 164.99719 * 22 21 20
25 25 C 1.36631 * 119.81573 * 359.97438 * 21 20 4
26 26 C 1.38262 * 120.11921 * 0.02710 * 3 2 1
27 27 H 1.08999 * 109.47208 * 60.00138 * 1 2 3
28 28 H 1.08999 * 109.47401 * 179.97438 * 1 2 3
29 29 H 1.08996 * 109.47212 * 299.99878 * 1 2 3
30 30 H 0.96999 * 119.99974 * 359.97438 * 9 7 6
31 31 H 1.08992 * 113.61796 * 334.64954 * 12 10 9
32 32 H 1.09005 * 113.68996 * 203.75566 * 12 10 9
33 33 H 1.08997 * 109.46971 * 296.52802 * 15 13 12
34 34 H 1.09004 * 109.46713 * 56.53041 * 15 13 12
35 35 H 1.08999 * 113.61567 * 89.07405 * 18 13 12
36 36 H 1.08998 * 113.61196 * 219.97759 * 18 13 12
37 37 H 1.08004 * 126.95163 * 180.28730 * 19 6 5
38 38 H 1.08994 * 109.47904 * 44.99513 * 22 21 20
39 39 H 0.96707 * 114.00254 * 300.00761 * 23 22 21
40 40 H 1.48499 * 109.99945 * 179.97438 * 24 22 21
41 41 H 1.48503 * 109.99975 * 301.31674 * 24 22 21
42 42 H 1.07996 * 119.75462 * 180.02562 * 25 21 20
43 43 H 1.07998 * 119.66065 * 359.97438 * 26 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0462 1.2114 0.0000
4 6 3.4387 1.2874 0.0005
5 8 4.4140 0.3574 -0.0056
6 6 5.6317 0.9387 0.0004
7 6 6.9131 0.2185 0.0002
8 8 7.9595 0.8389 0.0005
9 7 6.9287 -1.1292 -0.0003
10 6 8.2058 -1.8470 -0.0011
11 1 9.0251 -1.2534 0.4042
12 6 8.1172 -3.2623 0.5940
13 6 7.7823 -3.7526 -0.8246
14 1 6.7160 -3.7401 -1.0505
15 6 8.4511 -5.0799 -1.1882
16 6 8.0050 -5.5040 -2.5254
17 7 7.6610 -5.8304 -3.5606
18 6 8.5372 -2.5190 -1.3471
19 6 5.4943 2.2898 0.0010
20 6 4.0554 2.5510 0.0011
21 6 3.2765 3.7117 0.0016
22 6 3.9381 5.0656 0.0028
23 8 4.4599 5.3397 1.3046
24 14 2.6866 6.3688 -0.4515
25 6 1.9136 3.6151 0.0011
26 6 1.2957 2.3726 0.0006
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 6.0943 -1.6239 -0.0002
31 1 7.2995 -3.3872 1.3036
32 1 9.0676 -3.6383 0.9728
33 1 9.5336 -4.9528 -1.1896
34 1 8.1751 -5.8384 -0.4556
35 1 9.6028 -2.6909 -1.4985
36 1 8.0582 -2.0443 -2.2034
37 1 6.2874 3.0231 0.0009
38 1 4.7508 5.0736 -0.7235
39 1 3.7908 5.3484 2.0028
40 1 3.3265 7.7088 -0.4533
41 1 2.1130 6.0775 -1.7899
42 1 1.3127 4.5125 0.0011
43 1 0.2174 2.3119 0.0006
There are 62 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 62
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_16534922_6672420.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 06:09:35
Heat of formation + Delta-G solvation = -14.781479 kcal
Electronic energy + Delta-G solvation = -28971.824853 eV
Core-core repulsion = 24758.834212 eV
Total energy + Delta-G solvation = -4212.990642 eV
No. of doubly occupied orbitals = 62
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 343.130 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-43.79651 -41.42470 -40.63352 -39.61066 -39.08312 -37.46270 -37.01137 -34.85409
-33.68995 -31.99503 -31.42294 -30.66850 -28.54822 -26.64834 -26.38271 -25.67147
-24.01960 -23.92379 -22.16074 -21.81058 -20.34674 -19.92010 -19.08780 -18.65557
-18.39413 -17.85219 -17.73313 -17.19277 -16.93088 -16.62485 -16.25811 -16.18764
-16.03715 -15.78233 -15.59474 -15.47478 -14.84948 -14.59922 -14.54547 -14.44321
-14.19049 -14.04703 -13.73414 -13.58438 -13.42973 -13.36881 -13.28468 -13.12073
-12.42777 -12.39744 -12.30371 -12.10179 -11.97746 -11.92200 -11.60021 -11.51618
-11.15126 -11.05209 -10.45370 -10.29824 -9.85237 -9.02814 -5.00980 -0.71280
0.07850 0.57264 1.13693 1.29551 1.67630 1.79383 1.83274 1.84963
1.87009 1.99754 2.12052 2.37795 3.06581 3.14639 3.40402 3.49391
3.61187 3.67246 3.68392 3.78525 3.84425 3.86008 3.94110 3.96194
4.15600 4.32323 4.38723 4.39725 4.42211 4.43569 4.62966 4.71160
4.76211 4.79688 4.82070 4.84631 4.88851 4.94859 5.02341 5.07395
5.11293 5.19569 5.19933 5.32152 5.51314 5.59253 6.16508 6.26837
6.66115 6.78495 6.79049
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.013 3.987
2 O -0.334 6.334
3 C 0.136 3.864
4 C 0.020 3.980
5 O -0.181 6.181
6 C -0.034 4.034
7 C 0.604 3.396
8 O -0.544 6.544
9 N -0.687 5.687
10 C 0.100 3.900
11 H 0.099 0.901
12 C -0.114 4.114
13 C -0.104 4.104
14 H 0.090 0.910
15 C -0.013 4.013
16 C 0.232 3.768
17 N -0.520 5.520
18 C -0.153 4.153
19 C -0.116 4.116
20 C -0.099 4.099
21 C -0.108 4.108
22 C -0.080 4.080
23 O -0.554 6.554
24 Si 0.797 3.203
25 C -0.079 4.079
26 C -0.165 4.165
27 H 0.074 0.926
28 H 0.114 0.886
29 H 0.079 0.921
30 H 0.416 0.584
31 H 0.089 0.911
32 H 0.133 0.867
33 H 0.141 0.859
34 H 0.146 0.854
35 H 0.116 0.884
36 H 0.049 0.951
37 H 0.169 0.831
38 H 0.096 0.904
39 H 0.396 0.604
40 H -0.301 1.301
41 H -0.281 1.281
42 H 0.176 0.824
43 H 0.184 0.816
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.596 -0.812 7.030 9.674
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.080 4.080
2 O -0.248 6.248
3 C 0.090 3.910
4 C -0.029 4.029
5 O -0.083 6.083
6 C -0.084 4.084
7 C 0.389 3.611
8 O -0.423 6.423
9 N -0.337 5.337
10 C -0.004 4.004
11 H 0.117 0.883
12 C -0.151 4.151
13 C -0.124 4.124
14 H 0.109 0.891
15 C -0.052 4.052
16 C -0.084 4.084
17 N -0.198 5.198
18 C -0.192 4.192
19 C -0.137 4.137
20 C -0.100 4.100
21 C -0.109 4.109
22 C -0.189 4.189
23 O -0.362 6.362
24 Si 0.701 3.299
25 C -0.096 4.096
26 C -0.183 4.183
27 H 0.092 0.908
28 H 0.133 0.867
29 H 0.097 0.903
30 H 0.253 0.747
31 H 0.107 0.893
32 H 0.151 0.849
33 H 0.158 0.842
34 H 0.163 0.837
35 H 0.134 0.866
36 H 0.067 0.933
37 H 0.187 0.813
38 H 0.114 0.886
39 H 0.246 0.754
40 H -0.229 1.229
41 H -0.208 1.208
42 H 0.193 0.807
43 H 0.201 0.799
Dipole moment (debyes) X Y Z Total
from point charges -5.987 -0.773 4.594 7.586
hybrid contribution 0.300 -0.285 -0.316 0.521
sum -5.688 -1.059 4.279 7.196
Atomic orbital electron populations
1.23493 0.75249 1.06012 1.03266 1.86142 1.24380 1.25848 1.88457
1.18005 0.86041 0.86955 1.00022 1.19233 0.88315 0.87062 1.08240
1.84005 1.12696 1.35061 1.76525 1.21979 0.84129 0.92723 1.09578
1.16646 0.84874 0.82923 0.76614 1.90890 1.31345 1.68270 1.51831
1.45569 1.11018 1.04644 1.72489 1.22215 0.85361 0.94145 0.98695
0.88311 1.23352 1.05590 0.90931 0.95273 1.22561 1.00149 0.92142
0.97554 0.89130 1.19725 1.03539 0.98141 0.83810 1.30281 0.91508
0.91255 0.95313 1.81427 1.11725 1.11737 1.14930 1.23714 1.02664
0.96431 0.96359 1.22847 0.95467 0.94499 1.00870 1.19600 0.92308
0.92970 1.05126 1.19693 0.93795 0.93928 1.03496 1.25356 1.05827
0.98617 0.89068 1.86505 1.39668 1.93358 1.16709 0.93844 0.80314
0.73113 0.82622 1.20798 0.92421 0.98630 0.97730 1.21438 1.01994
0.89524 1.05386 0.90782 0.86746 0.90276 0.74682 0.89288 0.84914
0.84161 0.83687 0.86578 0.93252 0.81341 0.88594 0.75406 1.22891
1.20772 0.80717 0.79898
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 -0.10 9.81 113.37 1.11 1.01 16
2 O -0.33 -0.75 10.50 -93.13 -0.98 -1.72 16
3 C 0.14 0.38 6.70 22.57 0.15 0.53 16
4 C 0.02 0.15 7.35 23.14 0.17 0.32 16
5 O -0.18 -1.53 10.28 -13.39 -0.14 -1.67 16
6 C -0.03 -0.29 7.07 24.00 0.17 -0.12 16
7 C 0.60 4.83 7.80 86.54 0.67 5.51 16
8 O -0.54 -7.68 16.42 -4.19 -0.07 -7.75 16
9 N -0.69 -0.48 5.26 -443.28 -2.33 -2.81 16
10 C 0.10 -0.34 4.33 45.61 0.20 -0.15 16
11 H 0.10 -0.04 7.46 -2.39 -0.02 -0.06 16
12 C -0.11 1.29 7.39 31.12 0.23 1.52 16
13 C -0.10 0.98 3.48 -10.26 -0.04 0.94 16
14 H 0.09 -0.67 8.13 -2.39 -0.02 -0.69 16
15 C -0.01 0.15 5.53 28.79 0.16 0.31 16
16 C 0.23 0.12 15.43 89.41 1.38 1.50 16
17 N -0.52 -5.45 18.56 20.04 0.37 -5.07 16
18 C -0.15 0.74 7.45 31.21 0.23 0.98 16
19 C -0.12 -1.04 10.68 23.79 0.25 -0.78 16
20 C -0.10 -0.67 6.16 -20.25 -0.12 -0.80 16
21 C -0.11 -0.14 5.26 -19.87 -0.10 -0.25 16
22 C -0.08 -0.04 2.71 71.24 0.19 0.16 16
23 O -0.55 -0.73 12.88 -148.98 -1.92 -2.65 16
24 Si 0.80 -3.01 29.93 68.60 2.05 -0.96 16
25 C -0.08 0.35 8.62 22.02 0.19 0.54 16
26 C -0.16 0.66 9.03 22.40 0.20 0.86 16
27 H 0.07 -0.75 7.66 -2.39 -0.02 -0.77 16
28 H 0.11 -1.09 8.14 -2.39 -0.02 -1.11 16
29 H 0.08 -0.87 7.66 -2.39 -0.02 -0.88 16
30 H 0.42 -1.02 8.42 -92.71 -0.78 -1.81 16
31 H 0.09 -1.04 8.14 -2.39 -0.02 -1.06 16
32 H 0.13 -2.11 8.10 -2.38 -0.02 -2.12 16
33 H 0.14 -2.28 7.88 -2.39 -0.02 -2.30 16
34 H 0.15 -2.45 8.14 -2.38 -0.02 -2.47 16
35 H 0.12 -0.93 7.92 -2.39 -0.02 -0.95 16
36 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16
37 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16
38 H 0.10 0.32 7.96 -2.39 -0.02 0.31 16
39 H 0.40 -3.06 8.70 -74.05 -0.64 -3.71 16
40 H -0.30 -1.32 7.11 99.48 0.71 -0.61 16
41 H -0.28 -0.19 7.11 99.48 0.71 0.52 16
42 H 0.18 -2.09 5.07 -2.91 -0.01 -2.11 16
43 H 0.18 -2.10 6.26 -2.91 -0.02 -2.12 16
Total: 0.00 -32.79 374.67 1.74 -31.04
By element:
Atomic # 1 Polarization: -20.18 SS G_CDS: -0.29 Total: -20.47 kcal
Atomic # 6 Polarization: 7.01 SS G_CDS: 5.05 Total: 12.06 kcal
Atomic # 7 Polarization: -5.92 SS G_CDS: -1.96 Total: -7.89 kcal
Atomic # 8 Polarization: -10.69 SS G_CDS: -3.10 Total: -13.79 kcal
Atomic # 14 Polarization: -3.01 SS G_CDS: 2.05 Total: -0.96 kcal
Total: -32.79 1.74 -31.04 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16534922_6672420.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.263 kcal
(2) G-P(sol) polarization free energy of solvation -32.788 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.525 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.044 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.781 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds