Wall clock time and date at job start Sun Mar 7 2021 06:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81400 * 103.00166 * 2 1 4 4 C 1.52996 * 109.47353 * 179.97438 * 3 2 1 5 5 H 1.09006 * 112.84569 * 316.19641 * 4 3 2 6 6 C 1.53777 * 113.69194 * 87.46222 * 4 3 2 7 7 C 1.53783 * 87.08134 * 139.99517 * 6 4 3 8 8 H 1.09006 * 113.68585 * 220.01144 * 7 6 4 9 9 N 1.46497 * 113.61289 * 89.11972 * 7 6 4 10 10 C 1.34781 * 120.00117 * 107.50736 * 9 7 6 11 11 O 1.21589 * 119.99598 * 359.97438 * 10 9 7 12 12 C 1.47567 * 119.99718 * 179.97438 * 10 9 7 13 13 C 1.40202 * 120.19006 * 179.97438 * 12 10 9 14 14 N 1.39668 * 120.15405 * 0.04260 * 13 12 10 15 15 C 1.36659 * 125.68235 * 270.02127 * 14 13 12 16 16 C 1.50693 * 125.89988 * 359.97438 * 15 14 13 17 17 C 1.34806 * 108.19117 * 179.97438 * 15 14 13 18 18 C 1.40989 * 107.48854 * 0.02562 * 17 15 14 19 19 C 1.50706 * 126.25488 * 179.97438 * 18 17 15 20 20 O 1.42900 * 109.46941 * 104.97534 * 19 18 17 21 21 Si 1.86295 * 109.47197 * 344.97662 * 19 18 17 22 22 C 1.34799 * 107.48602 * 359.75433 * 18 17 15 23 23 C 1.50708 * 125.90503 * 180.27117 * 22 18 17 24 24 C 1.38763 * 119.69331 * 180.02562 * 13 12 10 25 25 C 1.38067 * 120.07036 * 0.02562 * 24 13 12 26 26 C 1.38529 * 120.39677 * 0.02562 * 25 24 13 27 27 C 1.37835 * 120.30825 * 359.97438 * 26 25 24 28 28 C 1.53784 * 113.61569 * 185.00131 * 4 3 2 29 29 H 1.08990 * 109.47425 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47190 * 300.00376 * 1 2 3 31 31 H 1.08997 * 109.47115 * 59.99501 * 1 2 3 32 32 H 1.09005 * 109.47121 * 59.99854 * 3 2 1 33 33 H 1.08994 * 109.47209 * 300.00121 * 3 2 1 34 34 H 1.09002 * 113.61178 * 25.44447 * 6 4 3 35 35 H 1.08999 * 113.61806 * 254.54228 * 6 4 3 36 36 H 0.97001 * 119.99681 * 287.49970 * 9 7 6 37 37 H 1.09002 * 109.47488 * 89.99982 * 16 15 14 38 38 H 1.09007 * 109.47151 * 209.99676 * 16 15 14 39 39 H 1.08998 * 109.47651 * 329.99805 * 16 15 14 40 40 H 1.08003 * 126.25241 * 179.97438 * 17 15 14 41 41 H 1.08997 * 109.47154 * 224.97397 * 19 18 17 42 42 H 0.96703 * 114.00284 * 179.97438 * 20 19 18 43 43 H 1.48499 * 109.99988 * 298.68085 * 21 19 18 44 44 H 1.48508 * 109.99895 * 59.99980 * 21 19 18 45 45 H 1.08997 * 109.47270 * 270.14353 * 23 22 18 46 46 H 1.08997 * 109.46755 * 30.13912 * 23 22 18 47 47 H 1.08999 * 109.47283 * 150.13974 * 23 22 18 48 48 H 1.07996 * 119.96473 * 180.02562 * 24 13 12 49 49 H 1.08009 * 119.80148 * 180.02562 * 25 24 13 50 50 H 1.08000 * 119.85077 * 180.27603 * 26 25 24 51 51 H 1.08002 * 120.03767 * 179.97438 * 27 26 25 52 52 H 1.08995 * 113.61501 * 105.38824 * 28 4 3 53 53 H 1.08994 * 113.69000 * 334.49088 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.2443 1.2673 0.6963 6 6 4.3639 1.9475 -1.4059 7 6 5.2890 3.0694 -0.9054 8 1 5.4554 3.8592 -1.6381 9 7 6.5319 2.5805 -0.3035 10 6 7.7000 2.7216 -0.9609 11 8 7.7221 3.2543 -2.0537 12 6 8.9521 2.2296 -0.3543 13 6 10.1694 2.3737 -1.0348 14 7 10.2033 2.9848 -2.2902 15 6 10.0683 2.3468 -3.4912 16 6 9.8585 0.8675 -3.6872 17 6 10.1552 3.2696 -4.4701 18 6 10.3515 4.5228 -3.8547 19 6 10.5050 5.8468 -4.5581 20 8 9.2991 6.6013 -4.4215 21 14 10.8528 5.5536 -6.3646 22 6 10.3718 4.3210 -2.5221 23 6 10.5518 5.3846 -1.4697 24 6 11.3404 1.9068 -0.4550 25 6 11.3049 1.3029 0.7861 26 6 10.1039 1.1577 1.4609 27 6 8.9311 1.6157 0.8999 28 6 4.1962 3.4041 0.1235 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8032 2.2371 0.8900 33 1 1.8032 2.2371 -0.8899 34 1 3.6735 2.2665 -2.1866 35 1 4.8904 1.0263 -1.6556 36 1 6.5141 2.1553 0.5681 37 1 8.7905 0.6497 -3.6939 38 1 10.2977 0.5609 -4.6366 39 1 10.3354 0.3218 -2.8731 40 1 10.0878 3.0828 -5.5317 41 1 11.3322 6.4004 -4.1140 42 1 9.3263 7.4674 -4.8508 43 1 12.1211 4.7973 -6.5214 44 1 9.7321 4.7995 -6.9818 45 1 11.6133 5.5065 -1.2540 46 1 10.1444 6.3280 -1.8333 47 1 10.0280 5.0888 -0.5608 48 1 12.2806 2.0160 -0.9751 49 1 12.2191 0.9414 1.2335 50 1 10.0869 0.6880 2.4332 51 1 7.9971 1.4999 1.4297 52 1 4.5873 3.6588 1.1085 53 1 3.4608 4.1224 -0.2386 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_12335856.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:35:20 Heat of formation + Delta-G solvation = 51.174789 kcal Electronic energy + Delta-G solvation = -34646.954075 eV Core-core repulsion = 30385.652047 eV Total energy + Delta-G solvation = -4261.302028 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.166 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.98037 -41.45364 -40.14563 -39.00008 -37.63272 -35.03924 -34.25047 -33.72563 -32.47630 -30.66942 -30.41227 -30.21418 -29.63520 -27.30836 -26.79444 -25.50529 -24.68627 -23.97772 -23.35860 -22.10037 -21.12859 -20.40006 -19.98048 -18.98843 -18.28017 -17.92683 -17.45605 -17.29573 -16.64179 -16.49808 -16.25667 -16.05181 -15.81998 -15.60598 -15.51178 -15.27764 -15.13724 -15.00558 -14.84584 -14.67020 -14.32149 -14.29251 -14.24453 -13.95559 -13.85572 -13.76871 -13.64112 -13.49090 -13.39736 -13.23388 -13.17389 -13.01079 -12.88404 -12.66395 -12.50732 -12.36574 -12.15297 -11.92921 -11.57736 -11.30688 -11.10195 -10.93189 -10.35201 -10.22521 -10.13110 -10.04403 -9.68684 -8.81469 -8.73307 -4.96577 -0.47808 -0.01329 0.70195 1.06603 1.39434 1.61528 1.63972 1.69454 1.76898 1.81921 1.92943 2.11084 2.54860 3.35836 3.46052 3.48638 3.56719 3.66018 3.66423 3.76634 3.80325 3.91586 3.94990 4.14021 4.15027 4.16005 4.18574 4.22644 4.27178 4.28460 4.29740 4.36019 4.37788 4.46320 4.48460 4.52493 4.55371 4.61299 4.64900 4.67358 4.70460 4.76541 4.81580 4.83861 4.91145 4.92975 4.97699 5.01557 5.09490 5.09878 5.14195 5.23584 5.27559 5.49510 5.58999 5.94080 6.10510 6.36089 6.52088 7.03691 7.08533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.322 6.322 3 C -0.062 4.062 4 C -0.083 4.083 5 H 0.101 0.899 6 C -0.142 4.142 7 C 0.116 3.884 8 H 0.078 0.922 9 N -0.695 5.695 10 C 0.543 3.457 11 O -0.546 6.546 12 C -0.143 4.143 13 C 0.139 3.861 14 N -0.389 5.389 15 C 0.035 3.965 16 C -0.076 4.076 17 C -0.225 4.225 18 C -0.183 4.183 19 C -0.040 4.040 20 O -0.567 6.567 21 Si 0.791 3.209 22 C 0.062 3.938 23 C -0.074 4.074 24 C -0.121 4.121 25 C -0.074 4.074 26 C -0.103 4.103 27 C -0.074 4.074 28 C -0.117 4.117 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.412 0.588 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.120 0.880 41 H 0.081 0.919 42 H 0.395 0.605 43 H -0.296 1.296 44 H -0.311 1.311 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.054 0.946 48 H 0.136 0.864 49 H 0.167 0.833 50 H 0.173 0.827 51 H 0.161 0.839 52 H 0.093 0.907 53 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.054 0.933 8.212 8.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.097 6.097 3 C -0.210 4.210 4 C -0.102 4.102 5 H 0.119 0.881 6 C -0.181 4.181 7 C 0.010 3.990 8 H 0.096 0.904 9 N -0.348 5.348 10 C 0.331 3.669 11 O -0.423 6.423 12 C -0.148 4.148 13 C 0.050 3.950 14 N -0.063 5.063 15 C -0.074 4.074 16 C -0.134 4.134 17 C -0.249 4.249 18 C -0.189 4.189 19 C -0.150 4.150 20 O -0.376 6.376 21 Si 0.698 3.302 22 C -0.049 4.049 23 C -0.131 4.131 24 C -0.140 4.140 25 C -0.092 4.092 26 C -0.121 4.121 27 C -0.093 4.093 28 C -0.157 4.157 29 H 0.123 0.877 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.250 0.750 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.137 0.863 41 H 0.099 0.901 42 H 0.245 0.755 43 H -0.224 1.224 44 H -0.240 1.240 45 H 0.104 0.896 46 H 0.102 0.898 47 H 0.073 0.927 48 H 0.154 0.846 49 H 0.185 0.815 50 H 0.190 0.810 51 H 0.178 0.822 52 H 0.111 0.889 53 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.523 -0.816 7.440 7.503 hybrid contribution -1.161 0.261 0.194 1.206 sum -0.638 -0.554 7.635 7.681 Atomic orbital electron populations 1.23404 0.91705 1.07181 1.05744 1.87197 1.10305 1.13991 1.98187 1.23417 0.99229 0.92524 1.05852 1.22287 0.92529 0.97866 0.97546 0.88130 1.23466 0.98464 0.98668 0.97480 1.21796 0.83157 0.96945 0.97110 0.90417 1.45419 1.05458 1.61304 1.22636 1.18505 0.84317 0.79071 0.85023 1.90955 1.86969 1.43238 1.21173 1.20210 0.92044 1.04907 0.97593 1.17859 0.93783 0.98354 0.85052 1.40995 1.56031 1.05990 1.03280 1.20406 1.07617 0.95761 0.83611 1.20272 1.01874 0.87667 1.03555 1.20463 1.13473 0.93452 0.97489 1.18811 1.13468 0.94044 0.92581 1.24126 0.89819 0.90418 1.10617 1.86534 1.36287 1.34404 1.80388 0.95198 0.74885 0.85742 0.74353 1.20372 1.05879 0.83385 0.95218 1.20272 1.02707 0.95458 0.94709 1.21471 0.96618 0.98794 0.97120 1.21708 1.00424 0.94719 0.92386 1.21717 0.91058 0.97791 1.01515 1.21623 1.01128 0.94626 0.91938 1.23328 0.96563 0.95939 0.99845 0.87741 0.89419 0.89856 0.88460 0.89464 0.89021 0.92561 0.74951 0.92102 0.89286 0.90916 0.86271 0.90066 0.75492 1.22411 1.24039 0.89563 0.89821 0.92661 0.84621 0.81537 0.80988 0.82167 0.88887 0.87311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.29 10.76 113.37 1.22 1.51 16 2 S -0.32 -0.70 22.37 -56.49 -1.26 -1.96 16 3 C -0.06 0.18 5.78 71.98 0.42 0.60 16 4 C -0.08 0.27 3.53 -10.27 -0.04 0.23 16 5 H 0.10 -0.35 8.13 -2.38 -0.02 -0.37 16 6 C -0.14 -0.21 7.43 31.12 0.23 0.02 16 7 C 0.12 0.23 4.32 45.52 0.20 0.42 16 8 H 0.08 0.65 7.46 -2.38 -0.02 0.63 16 9 N -0.70 -0.91 5.21 -443.15 -2.31 -3.22 16 10 C 0.54 4.72 7.77 86.70 0.67 5.39 16 11 O -0.55 -10.10 13.28 -4.00 -0.05 -10.15 16 12 C -0.14 -0.60 5.89 -20.00 -0.12 -0.71 16 13 C 0.14 0.93 4.52 38.50 0.17 1.11 16 14 N -0.39 -4.88 1.45 -319.53 -0.46 -5.35 16 15 C 0.04 0.53 6.00 41.02 0.25 0.78 16 16 C -0.08 -0.69 10.09 71.23 0.72 0.03 16 17 C -0.22 -4.02 9.27 22.16 0.21 -3.82 16 18 C -0.18 -2.91 5.39 -19.98 -0.11 -3.02 16 19 C -0.04 -0.36 2.49 71.24 0.18 -0.18 16 20 O -0.57 -5.19 12.86 -148.98 -1.92 -7.11 16 21 Si 0.79 5.19 30.84 68.60 2.12 7.31 16 22 C 0.06 0.86 5.99 41.02 0.25 1.10 16 23 C -0.07 -0.59 9.87 71.24 0.70 0.12 16 24 C -0.12 -0.10 9.96 22.35 0.22 0.12 16 25 C -0.07 0.42 10.03 22.30 0.22 0.65 16 26 C -0.10 0.79 10.02 22.24 0.22 1.01 16 27 C -0.07 0.33 9.53 22.52 0.21 0.54 16 28 C -0.12 0.55 7.39 31.12 0.23 0.78 16 29 H 0.10 -0.33 8.14 -2.40 -0.02 -0.35 16 30 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.09 -0.28 7.85 -2.39 -0.02 -0.30 16 34 H 0.09 0.16 7.90 -2.39 -0.02 0.14 16 35 H 0.06 0.29 8.14 -2.39 -0.02 0.28 16 36 H 0.41 -2.21 6.73 -92.71 -0.62 -2.83 16 37 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.09 0.56 8.14 -2.38 -0.02 0.55 16 39 H 0.07 0.44 7.83 -2.39 -0.02 0.42 16 40 H 0.12 2.17 6.55 -2.91 -0.02 2.15 16 41 H 0.08 0.33 7.96 -2.39 -0.02 0.31 16 42 H 0.40 -1.10 8.74 -74.06 -0.65 -1.75 16 43 H -0.30 -3.56 7.11 99.48 0.71 -2.85 16 44 H -0.31 -4.85 7.06 99.48 0.70 -4.15 16 45 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.08 0.68 7.87 -2.39 -0.02 0.66 16 47 H 0.05 0.44 7.83 -2.39 -0.02 0.42 16 48 H 0.14 0.05 8.06 -2.91 -0.02 0.03 16 49 H 0.17 -1.89 8.06 -2.91 -0.02 -1.91 16 50 H 0.17 -2.42 8.06 -2.91 -0.02 -2.44 16 51 H 0.16 -1.71 6.40 -2.91 -0.02 -1.73 16 52 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 53 H 0.11 -0.66 8.10 -2.39 -0.02 -0.68 16 Total: 0.00 -30.48 443.02 1.85 -28.62 By element: Atomic # 1 Polarization: -14.49 SS G_CDS: -0.32 Total: -14.81 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 6.06 Total: 6.67 kcal Atomic # 7 Polarization: -5.80 SS G_CDS: -2.77 Total: -8.57 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -1.97 Total: -17.26 kcal Atomic # 14 Polarization: 5.19 SS G_CDS: 2.12 Total: 7.31 kcal Atomic # 16 Polarization: -0.70 SS G_CDS: -1.26 Total: -1.96 kcal Total: -30.48 1.85 -28.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_12335856.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.799 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds