Wall clock time and date at job start Sun Mar 7 2021 06:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81403 * 103.00185 * 2 1 4 4 C 1.53002 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.09005 * 112.84505 * 316.19215 * 4 3 2 6 6 C 1.53775 * 113.61647 * 87.50062 * 4 3 2 7 7 C 1.53781 * 87.08009 * 139.98169 * 6 4 3 8 8 H 1.09007 * 113.68514 * 220.00991 * 7 6 4 9 9 N 1.46499 * 113.61527 * 89.11759 * 7 6 4 10 10 C 1.34776 * 119.99718 * 107.50329 * 9 7 6 11 11 O 1.21560 * 120.00215 * 359.97438 * 10 9 7 12 12 C 1.47731 * 119.99504 * 180.02562 * 10 9 7 13 13 C 1.39639 * 120.11659 * 180.29188 * 12 10 9 14 14 C 1.37854 * 119.87793 * 180.24975 * 13 12 10 15 15 C 1.50696 * 119.93689 * 179.75349 * 14 13 12 16 16 O 1.42903 * 109.47131 * 254.72074 * 15 14 13 17 17 Si 1.86305 * 109.47185 * 134.72615 * 15 14 13 18 18 C 1.38637 * 120.11751 * 359.47982 * 14 13 12 19 19 F 1.35103 * 119.87874 * 180.25556 * 18 14 13 20 20 C 1.38672 * 120.24058 * 0.22527 * 18 14 13 21 21 C 1.37819 * 120.11907 * 0.05366 * 20 18 14 22 22 C 1.53782 * 87.08300 * 334.56507 * 7 6 4 23 23 H 1.09001 * 109.47260 * 299.99908 * 1 2 3 24 24 H 1.08992 * 109.47306 * 59.99931 * 1 2 3 25 25 H 1.09003 * 109.47296 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46754 * 60.00049 * 3 2 1 27 27 H 1.09002 * 109.46719 * 300.00410 * 3 2 1 28 28 H 1.09003 * 113.61099 * 25.43171 * 6 4 3 29 29 H 1.09001 * 113.61605 * 254.53421 * 6 4 3 30 30 H 0.97000 * 119.99757 * 287.50407 * 9 7 6 31 31 H 1.08000 * 120.05644 * 0.02562 * 13 12 10 32 32 H 1.08999 * 109.47358 * 14.72434 * 15 14 13 33 33 H 0.96700 * 114.00311 * 300.00591 * 16 15 14 34 34 H 1.48497 * 110.00233 * 179.97438 * 17 15 14 35 35 H 1.48492 * 109.99800 * 301.31995 * 17 15 14 36 36 H 1.07997 * 119.94244 * 180.02562 * 20 18 14 37 37 H 1.07998 * 120.06034 * 179.97438 * 21 20 18 38 38 H 1.09000 * 113.61636 * 139.97571 * 22 7 6 39 39 H 1.08991 * 113.61699 * 270.88723 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.2448 1.2672 0.6945 6 6 4.3608 1.9485 -1.4085 7 6 5.2868 3.0702 -0.9094 8 1 5.4515 3.8605 -1.6420 9 7 6.5311 2.5811 -0.3106 10 6 7.6977 2.7228 -0.9705 11 8 7.7173 3.2559 -2.0628 12 6 8.9524 2.2290 -0.3669 13 6 10.1633 2.3799 -1.0457 14 6 11.3304 1.9128 -0.4801 15 6 12.6372 2.0699 -1.2140 16 8 13.0365 0.8075 -1.7515 17 14 13.9422 2.6832 -0.0342 18 6 11.3049 1.3038 0.7651 19 9 12.4524 0.8523 1.3171 20 6 10.1060 1.1568 1.4462 21 6 8.9325 1.6151 0.8875 22 6 4.1962 3.4042 0.1221 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8031 2.2371 0.8900 27 1 1.8031 2.2371 -0.8900 28 1 3.6685 2.2679 -2.1876 29 1 4.8868 1.0275 -1.6600 30 1 6.5153 2.1554 0.5608 31 1 10.1848 2.8585 -2.0136 32 1 12.5144 2.7877 -2.0250 33 1 13.1647 0.1189 -1.0847 34 1 15.2360 2.8418 -0.7456 35 1 13.5242 3.9801 0.5559 36 1 10.0917 0.6820 2.4161 37 1 7.9992 1.4998 1.4186 38 1 4.5894 3.6582 1.1065 39 1 3.4591 4.1215 -0.2384 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_12496548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:35:42 Heat of formation + Delta-G solvation = -55.441544 kcal Electronic energy + Delta-G solvation = -22983.565056 eV Core-core repulsion = 19320.440630 eV Total energy + Delta-G solvation = -3663.124426 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.36082 -41.68955 -40.35442 -39.17018 -37.70131 -34.93633 -32.88587 -32.03520 -30.46765 -29.60864 -27.02304 -26.71742 -25.44299 -23.61823 -23.51895 -21.71549 -20.35175 -19.27176 -18.69590 -17.91676 -17.83195 -17.38186 -17.02174 -16.86124 -16.35677 -16.24059 -16.00196 -15.54830 -15.42360 -15.18212 -15.07364 -14.95405 -14.46136 -14.29794 -14.22619 -14.02727 -13.88873 -13.64247 -13.39089 -13.33082 -12.96896 -12.80896 -12.49645 -12.10314 -11.99940 -11.51865 -11.27548 -11.23780 -10.88101 -10.70752 -10.26625 -10.13039 -9.85386 -8.68634 -4.92566 -0.54317 -0.01666 0.75089 1.14522 1.48340 1.58202 1.68563 1.84375 1.94836 2.51918 2.91310 3.24798 3.42552 3.49001 3.53940 3.55348 3.58355 3.73398 3.81862 3.93341 4.07050 4.24973 4.28461 4.30557 4.34157 4.42820 4.52577 4.59870 4.72676 4.73396 4.77207 4.82707 4.86415 4.87376 4.97122 5.01376 5.04321 5.07395 5.15473 5.52572 5.59244 6.37992 6.57078 7.05321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.322 6.322 3 C -0.063 4.063 4 C -0.087 4.087 5 H 0.102 0.898 6 C -0.144 4.144 7 C 0.111 3.889 8 H 0.087 0.913 9 N -0.692 5.692 10 C 0.561 3.439 11 O -0.579 6.579 12 C -0.156 4.156 13 C -0.032 4.032 14 C -0.165 4.165 15 C -0.075 4.075 16 O -0.549 6.549 17 Si 0.748 3.252 18 C 0.122 3.878 19 F -0.099 7.099 20 C -0.141 4.141 21 C -0.042 4.042 22 C -0.118 4.118 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.416 0.584 31 H 0.129 0.871 32 H 0.111 0.889 33 H 0.393 0.607 34 H -0.287 1.287 35 H -0.285 1.285 36 H 0.183 0.817 37 H 0.175 0.825 38 H 0.094 0.906 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.714 -1.294 7.927 9.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.097 6.097 3 C -0.211 4.211 4 C -0.107 4.107 5 H 0.120 0.880 6 C -0.183 4.183 7 C 0.005 3.995 8 H 0.105 0.895 9 N -0.343 5.343 10 C 0.349 3.651 11 O -0.459 6.459 12 C -0.159 4.159 13 C -0.052 4.052 14 C -0.166 4.166 15 C -0.184 4.184 16 O -0.357 6.357 17 Si 0.652 3.348 18 C 0.103 3.897 19 F -0.077 7.077 20 C -0.159 4.159 21 C -0.060 4.060 22 C -0.158 4.158 23 H 0.105 0.895 24 H 0.102 0.898 25 H 0.122 0.878 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.255 0.745 31 H 0.147 0.853 32 H 0.129 0.871 33 H 0.242 0.758 34 H -0.214 1.214 35 H -0.211 1.211 36 H 0.200 0.800 37 H 0.192 0.808 38 H 0.112 0.888 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.514 -0.863 6.822 7.722 hybrid contribution -1.045 0.913 -0.567 1.499 sum -4.559 0.051 6.254 7.740 Atomic orbital electron populations 1.23400 0.91899 1.07119 1.05699 1.87203 1.10115 1.14153 1.98183 1.23437 0.99451 0.92381 1.05814 1.22341 0.92410 0.98065 0.97842 0.87980 1.23499 0.98507 0.98848 0.97404 1.21897 0.83029 0.97222 0.97328 0.89526 1.45433 1.05478 1.60687 1.22746 1.18410 0.84304 0.78014 0.84351 1.90792 1.87390 1.45408 1.22344 1.19964 0.92822 1.05480 0.97623 1.21000 0.90208 0.94879 0.99068 1.20279 0.97223 1.03616 0.95528 1.25077 0.98092 0.90883 1.04380 1.86524 1.90151 1.20699 1.38334 0.93866 0.75550 0.82665 0.82693 1.17884 0.83214 0.97136 0.91500 1.91194 1.46501 1.85443 1.84607 1.21470 0.89572 1.02152 1.02681 1.21548 0.99969 0.92413 0.92112 1.23345 0.96625 0.95860 0.99946 0.89513 0.89845 0.87849 0.88624 0.89396 0.88725 0.92178 0.74495 0.85272 0.87100 0.75767 1.21425 1.21123 0.79970 0.80818 0.88775 0.87239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.42 10.76 113.37 1.22 1.64 16 2 S -0.32 -0.17 22.37 -56.49 -1.26 -1.44 16 3 C -0.06 0.31 5.78 71.98 0.42 0.73 16 4 C -0.09 0.53 3.53 -10.27 -0.04 0.49 16 5 H 0.10 -0.65 8.13 -2.38 -0.02 -0.67 16 6 C -0.14 0.31 7.43 31.12 0.23 0.54 16 7 C 0.11 -0.24 4.32 45.52 0.20 -0.05 16 8 H 0.09 0.23 7.46 -2.38 -0.02 0.21 16 9 N -0.69 1.98 5.21 -443.02 -2.31 -0.33 16 10 C 0.56 2.46 7.77 86.75 0.67 3.13 16 11 O -0.58 -8.03 15.94 -3.91 -0.06 -8.10 16 12 C -0.16 -0.11 5.87 -20.08 -0.12 -0.23 16 13 C -0.03 -0.13 9.21 22.52 0.21 0.08 16 14 C -0.17 -0.21 4.78 -19.86 -0.09 -0.31 16 15 C -0.07 -0.19 2.81 71.23 0.20 0.01 16 16 O -0.55 -1.81 12.88 -148.98 -1.92 -3.73 16 17 Si 0.75 1.23 29.57 68.60 2.03 3.26 16 18 C 0.12 -0.38 6.63 22.47 0.15 -0.23 16 19 F -0.10 0.50 13.46 44.97 0.61 1.11 16 20 C -0.14 1.05 10.01 22.27 0.22 1.27 16 21 C -0.04 0.29 9.54 22.52 0.21 0.51 16 22 C -0.12 0.94 7.39 31.12 0.23 1.17 16 23 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 24 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 25 H 0.10 -0.43 8.14 -2.39 -0.02 -0.44 16 26 H 0.10 -0.67 8.14 -2.39 -0.02 -0.69 16 27 H 0.09 -0.49 7.84 -2.39 -0.02 -0.51 16 28 H 0.09 -0.21 7.90 -2.39 -0.02 -0.23 16 29 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.42 -4.06 6.73 -92.71 -0.62 -4.69 16 31 H 0.13 0.88 7.58 -2.91 -0.02 0.86 16 32 H 0.11 0.41 7.76 -2.39 -0.02 0.39 16 33 H 0.39 -1.80 8.41 -74.06 -0.62 -2.42 16 34 H -0.29 -2.32 7.11 99.48 0.71 -1.62 16 35 H -0.28 -1.91 7.11 99.48 0.71 -1.21 16 36 H 0.18 -2.50 8.06 -2.91 -0.02 -2.53 16 37 H 0.17 -2.55 6.40 -2.91 -0.02 -2.57 16 38 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 39 H 0.11 -1.02 8.10 -2.39 -0.02 -1.04 16 Total: 0.00 -20.13 342.68 0.67 -19.46 By element: Atomic # 1 Polarization: -18.89 SS G_CDS: -0.13 Total: -19.02 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 3.71 Total: 8.77 kcal Atomic # 7 Polarization: 1.98 SS G_CDS: -2.31 Total: -0.33 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -1.98 Total: -11.82 kcal Atomic # 9 Polarization: 0.50 SS G_CDS: 0.61 Total: 1.11 kcal Atomic # 14 Polarization: 1.23 SS G_CDS: 2.03 Total: 3.26 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -1.26 Total: -1.44 kcal Total: -20.13 0.67 -19.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_12496548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.978 kcal (2) G-P(sol) polarization free energy of solvation -20.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds