Wall clock time and date at job start Sun Mar 7 2021 06:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81397 * 103.00119 * 2 1 4 4 C 1.53008 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.84905 * 316.19512 * 4 3 2 6 6 C 1.53776 * 113.61215 * 87.50558 * 4 3 2 7 7 C 1.53779 * 87.08169 * 139.98209 * 6 4 3 8 8 H 1.08999 * 113.69023 * 220.00555 * 7 6 4 9 9 N 1.46502 * 113.61523 * 89.11073 * 7 6 4 10 10 C 1.34779 * 119.99782 * 107.50455 * 9 7 6 11 11 O 1.21580 * 119.99673 * 0.02562 * 10 9 7 12 12 C 1.47659 * 120.00104 * 179.97438 * 10 9 7 13 13 C 1.40002 * 120.45669 * 6.02829 * 12 10 9 14 14 N 1.31309 * 121.38299 * 180.02562 * 13 12 10 15 15 C 1.32825 * 121.89041 * 359.69794 * 14 13 12 16 16 N 1.37145 * 132.96854 * 179.58360 * 15 14 13 17 17 C 1.36942 * 110.11767 * 180.49108 * 16 15 14 18 18 C 1.34184 * 109.95070 * 0.25632 * 17 16 15 19 19 C 1.50703 * 126.59709 * 180.02562 * 18 17 16 20 20 O 1.42898 * 109.46982 * 254.97729 * 19 18 17 21 21 Si 1.86299 * 109.47286 * 14.97732 * 19 18 17 22 22 C 1.41022 * 120.07593 * 0.58259 * 15 14 13 23 23 C 1.39286 * 119.62036 * 359.42927 * 22 15 14 24 24 C 1.50706 * 121.03108 * 180.25115 * 23 22 15 25 25 C 1.53778 * 113.61340 * 185.00441 * 4 3 2 26 26 H 1.08998 * 109.47100 * 59.99546 * 1 2 3 27 27 H 1.09002 * 109.46936 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46741 * 299.99925 * 1 2 3 29 29 H 1.09006 * 109.46878 * 60.00552 * 3 2 1 30 30 H 1.08988 * 109.47464 * 299.99892 * 3 2 1 31 31 H 1.09000 * 113.61953 * 25.43076 * 6 4 3 32 32 H 1.09003 * 113.61341 * 254.52805 * 6 4 3 33 33 H 0.96996 * 120.00365 * 287.50390 * 9 7 6 34 34 H 1.08008 * 119.30887 * 359.97438 * 13 12 10 35 35 H 0.97007 * 124.93841 * 0.74658 * 16 15 14 36 36 H 1.08003 * 125.02646 * 180.26509 * 17 16 15 37 37 H 1.08999 * 109.46955 * 134.97844 * 19 18 17 38 38 H 0.96698 * 114.00654 * 180.02562 * 20 19 18 39 39 H 1.48503 * 109.99717 * 178.68197 * 21 19 18 40 40 H 1.48492 * 110.00049 * 299.99961 * 21 19 18 41 41 H 1.08998 * 109.46847 * 96.29529 * 24 23 22 42 42 H 1.08994 * 109.47528 * 216.29864 * 24 23 22 43 43 H 1.09001 * 109.47163 * 336.30313 * 24 23 22 44 44 H 1.08996 * 113.61614 * 105.47334 * 25 4 3 45 45 H 1.09005 * 113.68832 * 334.57407 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 1 4.2444 1.2674 0.6962 6 6 4.3620 1.9482 -1.4068 7 6 5.2876 3.0700 -0.9071 8 1 5.4530 3.8601 -1.6396 9 7 6.5314 2.5810 -0.3071 10 6 7.6986 2.7224 -0.9661 11 8 7.7192 3.2563 -2.0582 12 6 8.9524 2.2300 -0.3611 13 6 8.9256 1.5042 0.8357 14 7 10.0294 1.0582 1.3898 15 6 11.2222 1.2661 0.8438 16 7 12.4951 0.9194 1.2187 17 6 13.3996 1.3875 0.3032 18 6 12.7610 2.0462 -0.6759 19 6 13.3926 2.7112 -1.8718 20 8 13.3860 4.1282 -1.6875 21 14 15.1486 2.1172 -2.0573 22 6 11.3318 1.9942 -0.3590 23 6 10.1821 2.4825 -0.9752 24 6 10.2617 3.2596 -2.2640 25 6 4.1962 3.4040 0.1236 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8032 2.2371 0.8901 30 1 1.8032 2.2371 -0.8899 31 1 3.6704 2.2675 -2.1865 32 1 4.8882 1.0272 -1.6576 33 1 6.5150 2.1554 0.5643 34 1 7.9772 1.3077 1.3138 35 1 12.7214 0.4129 2.0144 36 1 14.4690 1.2471 0.3608 37 1 12.8270 2.4588 -2.7687 38 1 13.7780 4.6221 -2.4207 39 1 15.7724 2.7415 -3.2517 40 1 15.9303 2.4553 -0.8409 41 1 10.0834 2.5888 -3.1044 42 1 9.5077 4.0466 -2.2610 43 1 11.2519 3.7054 -2.3589 44 1 4.5887 3.6583 1.1082 45 1 3.4601 4.1225 -0.2372 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535148_12890568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:35:57 Heat of formation + Delta-G solvation = 35.372717 kcal Electronic energy + Delta-G solvation = -27858.512702 eV Core-core repulsion = 23970.400913 eV Total energy + Delta-G solvation = -3888.111789 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.129 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.78972 -41.31306 -39.75469 -38.49020 -37.83401 -35.15934 -34.52596 -32.02867 -31.39680 -30.27630 -29.64676 -28.69872 -26.77470 -26.48114 -24.89535 -24.16333 -23.41273 -21.95878 -20.40296 -20.26804 -19.17262 -18.67071 -18.49706 -17.58899 -17.37261 -17.00023 -16.62906 -16.37560 -16.08228 -15.91291 -15.58405 -15.32051 -15.18936 -15.07368 -14.97546 -14.64840 -14.40543 -14.12496 -13.99680 -13.91014 -13.65232 -13.58898 -13.45580 -13.36530 -13.21172 -12.84717 -12.76468 -12.65929 -12.11097 -12.00413 -11.54591 -11.26130 -11.02895 -10.95810 -10.89964 -10.44126 -10.20388 -10.02586 -9.53294 -9.08493 -8.63264 -5.01082 -0.18636 0.00081 0.69944 1.22890 1.40718 1.52657 1.62955 1.66573 1.89973 1.95681 2.08766 2.88755 3.28388 3.35478 3.40422 3.49109 3.60590 3.64440 3.72332 3.76559 3.80143 3.85368 4.11186 4.16463 4.17211 4.17959 4.23413 4.31982 4.34828 4.46482 4.50534 4.65861 4.68540 4.70649 4.75667 4.77568 4.83109 4.95869 4.98798 5.03664 5.09566 5.13197 5.25969 5.41415 5.53361 5.64406 5.82171 6.15340 6.47093 6.50193 6.90486 7.27695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.264 6.264 3 C -0.075 4.075 4 C -0.096 4.096 5 H 0.099 0.901 6 C -0.142 4.142 7 C 0.122 3.878 8 H 0.108 0.892 9 N -0.711 5.711 10 C 0.576 3.424 11 O -0.528 6.528 12 C -0.234 4.234 13 C 0.180 3.820 14 N -0.503 5.503 15 C 0.309 3.691 16 N -0.569 5.569 17 C 0.072 3.928 18 C -0.133 4.133 19 C -0.044 4.044 20 O -0.534 6.534 21 Si 0.682 3.318 22 C -0.148 4.148 23 C 0.085 3.915 24 C -0.131 4.131 25 C -0.136 4.136 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.399 0.601 34 H 0.162 0.838 35 H 0.426 0.574 36 H 0.184 0.816 37 H 0.077 0.923 38 H 0.379 0.621 39 H -0.258 1.258 40 H -0.253 1.253 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.176 -1.435 0.639 1.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.038 6.038 3 C -0.223 4.223 4 C -0.116 4.116 5 H 0.117 0.883 6 C -0.181 4.181 7 C 0.017 3.983 8 H 0.126 0.874 9 N -0.363 5.363 10 C 0.364 3.636 11 O -0.406 6.406 12 C -0.241 4.241 13 C 0.011 3.989 14 N -0.216 5.216 15 C 0.075 3.925 16 N -0.175 5.175 17 C -0.054 4.054 18 C -0.141 4.141 19 C -0.154 4.154 20 O -0.341 6.341 21 Si 0.582 3.418 22 C -0.155 4.155 23 C 0.077 3.923 24 C -0.186 4.186 25 C -0.176 4.176 26 H 0.095 0.905 27 H 0.120 0.880 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.235 0.765 34 H 0.179 0.821 35 H 0.265 0.735 36 H 0.201 0.799 37 H 0.095 0.905 38 H 0.226 0.774 39 H -0.182 1.182 40 H -0.177 1.177 41 H 0.101 0.899 42 H 0.116 0.884 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.520 -2.415 1.262 3.120 hybrid contribution -1.088 1.996 -0.061 2.274 sum 0.433 -0.419 1.201 1.344 Atomic orbital electron populations 1.23393 0.94106 1.06703 1.04922 1.87038 1.07447 1.11292 1.98046 1.23430 0.99381 0.94510 1.05003 1.22394 0.92558 0.97531 0.99075 0.88289 1.23504 0.98493 0.99871 0.96242 1.21796 0.82689 0.97447 0.96407 0.87442 1.45556 1.06207 1.62042 1.22504 1.17857 0.82785 0.78270 0.84678 1.90753 1.86229 1.43350 1.20221 1.20394 0.93822 1.09643 1.00258 1.22494 0.95102 0.90823 0.90436 1.66437 0.96106 1.24501 1.34511 1.18474 0.86180 0.96068 0.91738 1.41486 1.03029 1.49033 1.23913 1.21724 0.95113 0.99272 0.89308 1.19419 0.90704 1.05348 0.98603 1.24112 1.10572 0.83686 0.97063 1.86641 1.83168 1.16409 1.47875 0.95186 0.74330 0.91645 0.80622 1.19464 0.93659 1.04811 0.97593 1.19877 0.89194 0.88976 0.94253 1.21231 1.04280 1.00572 0.92557 1.23407 0.97862 0.96215 1.00135 0.90462 0.88000 0.90485 0.89876 0.89831 0.88818 0.90513 0.76508 0.82133 0.73515 0.79919 0.90472 0.77356 1.18232 1.17710 0.89944 0.88356 0.90431 0.90326 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.14 10.76 101.05 1.09 1.23 16 2 S -0.26 -0.24 22.37 -107.50 -2.40 -2.64 16 3 C -0.08 0.10 5.78 37.16 0.21 0.32 16 4 C -0.10 0.17 3.53 -89.81 -0.32 -0.15 16 5 H 0.10 -0.15 8.13 -51.93 -0.42 -0.57 16 6 C -0.14 0.11 7.43 -25.92 -0.19 -0.08 16 7 C 0.12 -0.07 4.32 -67.12 -0.29 -0.36 16 8 H 0.11 0.10 7.46 -51.93 -0.39 -0.29 16 9 N -0.71 0.20 5.21 -54.01 -0.28 -0.08 16 10 C 0.58 1.54 7.72 -12.41 -0.10 1.45 16 11 O -0.53 -2.88 13.09 5.30 0.07 -2.81 16 12 C -0.23 -0.62 5.89 -104.83 -0.62 -1.23 16 13 C 0.18 0.27 10.67 -17.11 -0.18 0.08 16 14 N -0.50 -1.57 10.37 -11.96 -0.12 -1.69 16 15 C 0.31 0.91 8.42 -155.72 -1.31 -0.40 16 16 N -0.57 0.01 6.04 -12.12 -0.07 -0.06 16 17 C 0.07 -0.04 10.44 -16.70 -0.17 -0.22 16 18 C -0.13 -0.18 5.61 -102.73 -0.58 -0.76 16 19 C -0.04 0.01 1.87 36.01 0.07 0.08 16 20 O -0.53 -0.52 11.64 -35.23 -0.41 -0.93 16 21 Si 0.68 -1.32 30.80 -169.99 -5.24 -6.55 16 22 C -0.15 -0.49 6.16 -105.13 -0.65 -1.14 16 23 C 0.09 0.30 5.98 -103.67 -0.62 -0.32 16 24 C -0.13 -0.37 8.46 36.01 0.30 -0.07 16 25 C -0.14 0.34 7.39 -25.92 -0.19 0.15 16 26 H 0.08 -0.13 8.14 -51.93 -0.42 -0.56 16 27 H 0.10 -0.15 8.14 -51.92 -0.42 -0.58 16 28 H 0.08 -0.14 8.14 -51.92 -0.42 -0.56 16 29 H 0.08 -0.16 8.14 -51.92 -0.42 -0.58 16 30 H 0.08 -0.15 7.84 -51.93 -0.41 -0.56 16 31 H 0.09 -0.10 7.90 -51.93 -0.41 -0.51 16 32 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 33 H 0.40 -1.02 6.78 -40.82 -0.28 -1.30 16 34 H 0.16 -0.33 6.43 -52.48 -0.34 -0.67 16 35 H 0.43 -1.17 8.96 -40.82 -0.37 -1.54 16 36 H 0.18 -0.68 6.31 -52.48 -0.33 -1.01 16 37 H 0.08 -0.09 7.13 -51.93 -0.37 -0.46 16 38 H 0.38 -1.12 8.74 45.56 0.40 -0.72 16 39 H -0.26 -0.10 7.11 56.52 0.40 0.31 16 40 H -0.25 -0.09 7.04 56.52 0.40 0.31 16 41 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.10 0.42 5.95 -51.93 -0.31 0.11 16 43 H 0.08 0.17 4.79 -51.93 -0.25 -0.08 16 44 H 0.08 -0.22 8.14 -51.93 -0.42 -0.65 16 45 H 0.10 -0.31 8.10 -51.93 -0.42 -0.73 16 LS Contribution 375.61 15.07 5.66 5.66 Total: 0.00 -9.38 375.61 -12.39 -21.77 By element: Atomic # 1 Polarization: -5.19 SS G_CDS: -6.05 Total: -11.24 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -3.54 Total: -1.43 kcal Atomic # 7 Polarization: -1.35 SS G_CDS: -0.48 Total: -1.83 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: -0.34 Total: -3.73 kcal Atomic # 14 Polarization: -1.32 SS G_CDS: -5.24 Total: -6.55 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -2.40 Total: -2.64 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -9.38 -12.39 -21.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_12890568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.144 kcal (2) G-P(sol) polarization free energy of solvation -9.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds