Wall clock time and date at job start Sun Mar 7 2021 06:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81408 * 102.99806 * 2 1 4 4 C 1.52992 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.08999 * 112.90986 * 43.74622 * 4 3 2 6 6 C 1.53787 * 113.61317 * 174.99615 * 4 3 2 7 7 C 1.53787 * 87.08023 * 139.98140 * 6 4 3 8 8 H 1.09006 * 113.61103 * 219.93710 * 7 6 4 9 9 N 1.46492 * 113.61444 * 89.11688 * 7 6 4 10 10 C 1.34779 * 119.99828 * 154.99908 * 9 7 6 11 11 O 1.21572 * 119.99947 * 359.97438 * 10 9 7 12 12 C 1.47725 * 119.99941 * 180.02562 * 10 9 7 13 13 C 1.39709 * 120.02420 * 180.02562 * 12 10 9 14 14 C 1.37666 * 119.97543 * 179.97438 * 13 12 10 15 15 C 1.39503 * 120.02442 * 359.97438 * 14 13 12 16 16 C 1.48273 * 119.97478 * 179.97438 * 15 14 13 17 17 C 1.39400 * 120.12540 * 180.02562 * 16 15 14 18 18 C 1.38004 * 119.86767 * 179.74551 * 17 16 15 19 19 C 1.38332 * 120.13189 * 0.23969 * 18 17 16 20 20 C 1.50692 * 119.87273 * 180.02562 * 19 18 17 21 21 O 1.42896 * 109.47609 * 64.99572 * 20 19 18 22 22 Si 1.86305 * 109.47069 * 184.99918 * 20 19 18 23 23 C 1.38338 * 120.25295 * 0.02562 * 19 18 17 24 24 C 1.37998 * 120.12513 * 359.97438 * 23 19 18 25 25 C 1.39504 * 120.04703 * 0.28095 * 15 14 13 26 26 C 1.37672 * 120.02547 * 359.43919 * 25 15 14 27 27 C 1.53784 * 113.61454 * 272.49231 * 4 3 2 28 28 H 1.09005 * 109.47267 * 299.99694 * 1 2 3 29 29 H 1.09002 * 109.47637 * 60.00186 * 1 2 3 30 30 H 1.09011 * 109.47086 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47372 * 59.99902 * 3 2 1 32 32 H 1.09006 * 109.46543 * 299.99866 * 3 2 1 33 33 H 1.09001 * 113.61140 * 25.43253 * 6 4 3 34 34 H 1.08999 * 113.61358 * 254.52514 * 6 4 3 35 35 H 0.97002 * 120.00532 * 335.00004 * 9 7 6 36 36 H 1.08007 * 120.01172 * 359.95324 * 13 12 10 37 37 H 1.07997 * 119.98543 * 180.02562 * 14 13 12 38 38 H 1.08002 * 120.06765 * 0.03163 * 17 16 15 39 39 H 1.07999 * 119.93347 * 180.25189 * 18 17 16 40 40 H 1.09004 * 109.47549 * 304.99479 * 20 19 18 41 41 H 0.96707 * 113.99885 * 59.99697 * 21 20 19 42 42 H 1.48498 * 110.00175 * 179.97438 * 22 20 19 43 43 H 1.48498 * 109.99618 * 301.31545 * 22 20 19 44 44 H 1.07994 * 119.93328 * 179.97438 * 23 19 18 45 45 H 1.08004 * 120.06112 * 179.97438 * 24 23 19 46 46 H 1.08000 * 119.98436 * 179.70410 * 25 15 14 47 47 H 1.07998 * 120.00992 * 180.27374 * 26 25 15 48 48 H 1.08997 * 113.61284 * 105.47598 * 27 4 3 49 49 H 1.08995 * 113.61190 * 334.57284 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7422 1.9400 -0.0006 5 1 4.2452 1.2672 -0.6952 6 6 4.1960 3.4042 -0.1236 7 6 5.2874 3.0703 0.9071 8 1 5.4527 3.8605 1.6395 9 7 6.5312 2.5813 0.3072 10 6 7.6983 2.7228 0.9662 11 8 7.7189 3.2567 2.0582 12 6 8.9527 2.2303 0.3610 13 6 10.1627 2.3762 1.0438 14 6 11.3310 1.9164 0.4792 15 6 11.3068 1.3043 -0.7742 16 6 12.5658 0.8099 -1.3816 17 6 12.5453 0.1983 -2.6341 18 6 13.7210 -0.2552 -3.1968 19 6 14.9175 -0.1083 -2.5183 20 6 16.1979 -0.6050 -3.1384 21 8 16.4788 0.1483 -4.3197 22 14 17.5962 -0.4005 -1.9243 23 6 14.9431 0.4930 -1.2726 24 6 13.7737 0.9502 -0.7001 25 6 10.0998 1.1628 -1.4593 26 6 8.9295 1.6168 -0.8939 27 6 4.3618 1.9484 1.4068 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0278 0.0005 31 1 1.8031 2.2372 0.8899 32 1 1.8030 2.2371 -0.8901 33 1 3.4590 4.1215 0.2377 34 1 4.5885 3.6585 -1.1082 35 1 6.5148 2.1556 -0.5643 36 1 10.1817 2.8500 2.0143 37 1 12.2664 2.0287 1.0071 38 1 11.6119 0.0837 -3.1651 39 1 13.7070 -0.7255 -4.1689 40 1 16.0919 -1.6588 -3.3962 41 1 16.5859 1.0969 -4.1651 42 1 18.8646 -0.8874 -2.5237 43 1 17.7306 1.0277 -1.5405 44 1 15.8801 0.6046 -0.7473 45 1 13.7949 1.4191 0.2726 46 1 10.0829 0.6931 -2.4316 47 1 7.9946 1.5031 -1.4226 48 1 4.8881 1.0275 1.6576 49 1 3.6702 2.2677 2.1864 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535148_13158362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:36:01 Heat of formation + Delta-G solvation = 11.042454 kcal Electronic energy + Delta-G solvation = -28876.517768 eV Core-core repulsion = 24861.750480 eV Total energy + Delta-G solvation = -4014.767288 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.139 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.63353 -40.97326 -39.98395 -38.89990 -37.64050 -34.86251 -33.95534 -32.65222 -31.67027 -31.19078 -30.35999 -29.69418 -27.07577 -26.83143 -24.87145 -24.73532 -23.72324 -22.65248 -22.44339 -21.40347 -20.34510 -19.31365 -18.54623 -17.87061 -17.41323 -17.16328 -16.87765 -16.40507 -16.34246 -16.17411 -16.08015 -15.74767 -15.51157 -15.44200 -15.17289 -15.01129 -14.98428 -14.91619 -14.47631 -14.32481 -14.23018 -14.09672 -14.00301 -13.70120 -13.52245 -13.42113 -13.25164 -12.88436 -12.80751 -12.63891 -12.19657 -12.07377 -11.98674 -11.60427 -11.57638 -11.31291 -10.96159 -10.93777 -10.78682 -10.61687 -10.11999 -10.10409 -10.03459 -9.12665 -8.67028 -4.99970 -0.71683 0.28496 0.32605 0.47947 0.66166 1.23550 1.54999 1.59197 1.83530 1.92568 2.01870 2.57278 2.96275 3.29574 3.32502 3.39440 3.43298 3.52147 3.58893 3.62609 3.71023 3.75686 3.78855 3.89955 3.94742 4.13604 4.14587 4.17223 4.19465 4.20539 4.27803 4.28590 4.41801 4.47269 4.56241 4.60389 4.61551 4.63687 4.72620 4.74128 4.80540 4.84649 4.93638 4.97879 4.98197 5.06060 5.09001 5.13720 5.23007 5.35295 5.42016 5.52424 5.58715 5.74420 5.84545 6.34639 6.42323 7.17670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.264 6.264 3 C -0.075 4.075 4 C -0.096 4.096 5 H 0.098 0.902 6 C -0.136 4.136 7 C 0.120 3.880 8 H 0.108 0.892 9 N -0.710 5.710 10 C 0.562 3.438 11 O -0.532 6.532 12 C -0.136 4.136 13 C -0.053 4.053 14 C -0.118 4.118 15 C -0.017 4.017 16 C -0.049 4.049 17 C -0.105 4.105 18 C -0.090 4.090 19 C -0.112 4.112 20 C -0.076 4.076 21 O -0.529 6.529 22 Si 0.685 3.315 23 C -0.116 4.116 24 C -0.100 4.100 25 C -0.118 4.118 26 C -0.081 4.081 27 C -0.142 4.142 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.400 0.600 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.376 0.624 42 H -0.257 1.257 43 H -0.260 1.260 44 H 0.130 0.870 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.128 0.872 48 H 0.076 0.924 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.196 -0.496 -1.347 2.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.039 6.039 3 C -0.223 4.223 4 C -0.116 4.116 5 H 0.116 0.884 6 C -0.175 4.175 7 C 0.014 3.986 8 H 0.126 0.874 9 N -0.361 5.361 10 C 0.350 3.650 11 O -0.409 6.409 12 C -0.139 4.139 13 C -0.072 4.072 14 C -0.136 4.136 15 C -0.017 4.017 16 C -0.049 4.049 17 C -0.123 4.123 18 C -0.108 4.108 19 C -0.112 4.112 20 C -0.186 4.186 21 O -0.335 6.335 22 Si 0.587 3.413 23 C -0.133 4.133 24 C -0.118 4.118 25 C -0.136 4.136 26 C -0.100 4.100 27 C -0.181 4.181 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.236 0.764 36 H 0.158 0.842 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.137 0.863 41 H 0.224 0.776 42 H -0.182 1.182 43 H -0.185 1.185 44 H 0.148 0.852 45 H 0.149 0.851 46 H 0.151 0.849 47 H 0.145 0.855 48 H 0.095 0.905 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.808 -1.203 -0.665 1.595 hybrid contribution -1.271 1.654 -1.269 2.442 sum -2.079 0.451 -1.934 2.875 Atomic orbital electron populations 1.23396 0.94025 1.06736 1.04945 1.87033 1.07535 1.11235 1.98049 1.23425 0.99286 0.94567 1.05044 1.22390 0.92636 0.97494 0.99031 0.88361 1.23407 0.97825 0.96259 1.00053 1.21830 0.82741 0.97537 0.96493 0.87440 1.45574 1.06284 1.61737 1.22534 1.18268 0.83358 0.78505 0.84820 1.90802 1.86757 1.43049 1.20243 1.19949 0.93801 1.03933 0.96256 1.21232 0.90600 0.95712 0.99676 1.21247 0.98678 0.98732 0.94916 1.18993 0.92342 0.96418 0.93976 1.18821 0.92190 0.99138 0.94714 1.21318 0.98643 0.97670 0.94624 1.20979 0.91306 0.98746 0.99776 1.20389 0.95983 0.99706 0.95132 1.25051 1.00331 0.99015 0.94215 1.86612 1.92563 1.23532 1.30822 0.94941 0.77478 0.84504 0.84390 1.21010 0.98434 0.98780 0.95115 1.21223 0.91376 0.99243 0.99966 1.21163 0.91419 1.00632 1.00368 1.21195 0.98484 0.96306 0.94019 1.23506 0.98482 0.99810 0.96307 0.90436 0.90468 0.87970 0.89789 0.89847 0.88231 0.90349 0.76364 0.84196 0.84728 0.85284 0.85285 0.86297 0.77616 1.18158 1.18491 0.85239 0.85055 0.84891 0.85452 0.90531 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.16 10.76 101.05 1.09 1.25 16 2 S -0.26 -0.18 22.37 -107.50 -2.40 -2.58 16 3 C -0.08 0.12 5.78 37.15 0.21 0.33 16 4 C -0.10 0.19 3.53 -89.81 -0.32 -0.13 16 5 H 0.10 -0.17 8.13 -51.93 -0.42 -0.59 16 6 C -0.14 0.36 7.39 -25.91 -0.19 0.17 16 7 C 0.12 -0.07 4.32 -67.12 -0.29 -0.36 16 8 H 0.11 0.11 7.46 -51.93 -0.39 -0.27 16 9 N -0.71 0.30 5.21 -53.99 -0.28 0.02 16 10 C 0.56 1.38 7.77 -12.38 -0.10 1.28 16 11 O -0.53 -3.27 15.93 5.30 0.08 -3.18 16 12 C -0.14 -0.15 5.88 -104.92 -0.62 -0.77 16 13 C -0.05 -0.06 9.58 -39.24 -0.38 -0.44 16 14 C -0.12 0.00 9.41 -39.32 -0.37 -0.37 16 15 C -0.02 0.00 5.88 -104.83 -0.62 -0.62 16 16 C -0.05 0.00 5.88 -104.91 -0.62 -0.62 16 17 C -0.10 0.05 9.43 -39.23 -0.37 -0.32 16 18 C -0.09 0.02 9.67 -39.63 -0.38 -0.37 16 19 C -0.11 0.04 5.36 -104.55 -0.56 -0.52 16 20 C -0.08 0.05 2.80 36.00 0.10 0.15 16 21 O -0.53 -0.48 12.83 -35.23 -0.45 -0.93 16 22 Si 0.69 -0.86 29.87 -169.99 -5.08 -5.94 16 23 C -0.12 0.10 8.65 -39.63 -0.34 -0.25 16 24 C -0.10 0.06 9.43 -39.24 -0.37 -0.31 16 25 C -0.12 0.10 9.41 -39.32 -0.37 -0.27 16 26 C -0.08 0.08 9.52 -39.24 -0.37 -0.29 16 27 C -0.14 0.11 7.43 -25.92 -0.19 -0.08 16 28 H 0.08 -0.15 8.14 -51.92 -0.42 -0.57 16 29 H 0.08 -0.16 8.14 -51.92 -0.42 -0.58 16 30 H 0.10 -0.17 8.14 -51.92 -0.42 -0.60 16 31 H 0.08 -0.16 7.84 -51.93 -0.41 -0.57 16 32 H 0.08 -0.18 8.14 -51.92 -0.42 -0.60 16 33 H 0.10 -0.33 8.10 -51.93 -0.42 -0.75 16 34 H 0.08 -0.24 8.14 -51.93 -0.42 -0.67 16 35 H 0.40 -1.13 6.72 -40.82 -0.27 -1.41 16 36 H 0.14 0.18 7.64 -52.48 -0.40 -0.23 16 37 H 0.13 -0.26 6.19 -52.49 -0.32 -0.59 16 38 H 0.13 -0.29 6.19 -52.49 -0.33 -0.62 16 39 H 0.13 -0.11 8.06 -52.49 -0.42 -0.53 16 40 H 0.12 -0.16 7.96 -51.93 -0.41 -0.57 16 41 H 0.38 -0.69 8.70 45.56 0.40 -0.29 16 42 H -0.26 -0.55 7.11 56.52 0.40 -0.15 16 43 H -0.26 -0.16 7.00 56.52 0.40 0.24 16 44 H 0.13 -0.30 4.82 -52.49 -0.25 -0.56 16 45 H 0.13 -0.32 6.19 -52.48 -0.33 -0.64 16 46 H 0.13 -0.37 6.19 -52.49 -0.32 -0.70 16 47 H 0.13 -0.47 6.39 -52.49 -0.34 -0.80 16 48 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 49 H 0.09 -0.10 7.90 -51.93 -0.41 -0.51 16 LS Contribution 411.51 15.07 6.20 6.20 Total: 0.00 -8.10 411.51 -13.77 -21.87 By element: Atomic # 1 Polarization: -6.15 SS G_CDS: -6.79 Total: -12.94 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -5.05 Total: -2.52 kcal Atomic # 7 Polarization: 0.30 SS G_CDS: -0.28 Total: 0.02 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -0.37 Total: -4.12 kcal Atomic # 14 Polarization: -0.86 SS G_CDS: -5.08 Total: -5.94 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -2.40 Total: -2.58 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -8.10 -13.77 -21.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_13158362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.911 kcal (2) G-P(sol) polarization free energy of solvation -8.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds