Wall clock time and date at job start Sun Mar 7 2021 06:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81408 * 102.99806 * 2 1 4 4 C 1.52992 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.08999 * 112.90986 * 43.74622 * 4 3 2 6 6 C 1.53787 * 113.61317 * 174.99615 * 4 3 2 7 7 C 1.53787 * 87.08023 * 139.98140 * 6 4 3 8 8 H 1.09006 * 113.61103 * 219.93710 * 7 6 4 9 9 N 1.46492 * 113.61444 * 89.11688 * 7 6 4 10 10 C 1.34779 * 119.99828 * 154.99908 * 9 7 6 11 11 O 1.21572 * 119.99947 * 359.97438 * 10 9 7 12 12 C 1.47725 * 119.99941 * 180.02562 * 10 9 7 13 13 C 1.39709 * 120.02420 * 180.02562 * 12 10 9 14 14 C 1.37666 * 119.97543 * 179.97438 * 13 12 10 15 15 C 1.39503 * 120.02442 * 359.97438 * 14 13 12 16 16 C 1.48273 * 119.97478 * 179.97438 * 15 14 13 17 17 C 1.39400 * 120.12540 * 180.02562 * 16 15 14 18 18 C 1.38004 * 119.86767 * 179.74551 * 17 16 15 19 19 C 1.38332 * 120.13189 * 0.23969 * 18 17 16 20 20 C 1.50692 * 119.87273 * 180.02562 * 19 18 17 21 21 O 1.42896 * 109.47609 * 64.99572 * 20 19 18 22 22 Si 1.86305 * 109.47069 * 184.99918 * 20 19 18 23 23 C 1.38338 * 120.25295 * 0.02562 * 19 18 17 24 24 C 1.37998 * 120.12513 * 359.97438 * 23 19 18 25 25 C 1.39504 * 120.04703 * 0.28095 * 15 14 13 26 26 C 1.37672 * 120.02547 * 359.43919 * 25 15 14 27 27 C 1.53784 * 113.61454 * 272.49231 * 4 3 2 28 28 H 1.09005 * 109.47267 * 299.99694 * 1 2 3 29 29 H 1.09002 * 109.47637 * 60.00186 * 1 2 3 30 30 H 1.09011 * 109.47086 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47372 * 59.99902 * 3 2 1 32 32 H 1.09006 * 109.46543 * 299.99866 * 3 2 1 33 33 H 1.09001 * 113.61140 * 25.43253 * 6 4 3 34 34 H 1.08999 * 113.61358 * 254.52514 * 6 4 3 35 35 H 0.97002 * 120.00532 * 335.00004 * 9 7 6 36 36 H 1.08007 * 120.01172 * 359.95324 * 13 12 10 37 37 H 1.07997 * 119.98543 * 180.02562 * 14 13 12 38 38 H 1.08002 * 120.06765 * 0.03163 * 17 16 15 39 39 H 1.07999 * 119.93347 * 180.25189 * 18 17 16 40 40 H 1.09004 * 109.47549 * 304.99479 * 20 19 18 41 41 H 0.96707 * 113.99885 * 59.99697 * 21 20 19 42 42 H 1.48498 * 110.00175 * 179.97438 * 22 20 19 43 43 H 1.48498 * 109.99618 * 301.31545 * 22 20 19 44 44 H 1.07994 * 119.93328 * 179.97438 * 23 19 18 45 45 H 1.08004 * 120.06112 * 179.97438 * 24 23 19 46 46 H 1.08000 * 119.98436 * 179.70410 * 25 15 14 47 47 H 1.07998 * 120.00992 * 180.27374 * 26 25 15 48 48 H 1.08997 * 113.61284 * 105.47598 * 27 4 3 49 49 H 1.08995 * 113.61190 * 334.57284 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7422 1.9400 -0.0006 5 1 4.2452 1.2672 -0.6952 6 6 4.1960 3.4042 -0.1236 7 6 5.2874 3.0703 0.9071 8 1 5.4527 3.8605 1.6395 9 7 6.5312 2.5813 0.3072 10 6 7.6983 2.7228 0.9662 11 8 7.7189 3.2567 2.0582 12 6 8.9527 2.2303 0.3610 13 6 10.1627 2.3762 1.0438 14 6 11.3310 1.9164 0.4792 15 6 11.3068 1.3043 -0.7742 16 6 12.5658 0.8099 -1.3816 17 6 12.5453 0.1983 -2.6341 18 6 13.7210 -0.2552 -3.1968 19 6 14.9175 -0.1083 -2.5183 20 6 16.1979 -0.6050 -3.1384 21 8 16.4788 0.1483 -4.3197 22 14 17.5962 -0.4005 -1.9243 23 6 14.9431 0.4930 -1.2726 24 6 13.7737 0.9502 -0.7001 25 6 10.0998 1.1628 -1.4593 26 6 8.9295 1.6168 -0.8939 27 6 4.3618 1.9484 1.4068 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0278 0.0005 31 1 1.8031 2.2372 0.8899 32 1 1.8030 2.2371 -0.8901 33 1 3.4590 4.1215 0.2377 34 1 4.5885 3.6585 -1.1082 35 1 6.5148 2.1556 -0.5643 36 1 10.1817 2.8500 2.0143 37 1 12.2664 2.0287 1.0071 38 1 11.6119 0.0837 -3.1651 39 1 13.7070 -0.7255 -4.1689 40 1 16.0919 -1.6588 -3.3962 41 1 16.5859 1.0969 -4.1651 42 1 18.8646 -0.8874 -2.5237 43 1 17.7306 1.0277 -1.5405 44 1 15.8801 0.6046 -0.7473 45 1 13.7949 1.4191 0.2726 46 1 10.0829 0.6931 -2.4316 47 1 7.9946 1.5031 -1.4226 48 1 4.8881 1.0275 1.6576 49 1 3.6702 2.2677 2.1864 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_13158362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:35:59 Heat of formation + Delta-G solvation = 16.648348 kcal Electronic energy + Delta-G solvation = -28876.274678 eV Core-core repulsion = 24861.750480 eV Total energy + Delta-G solvation = -4014.524198 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.139 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.66521 -40.91146 -39.94141 -38.96321 -37.63569 -34.95124 -33.91567 -32.57869 -31.60114 -31.14598 -30.28065 -29.58604 -27.04448 -26.72130 -24.84865 -24.66811 -23.66445 -22.58685 -22.43205 -21.38657 -20.31225 -19.28922 -18.53252 -17.85098 -17.39234 -17.17854 -16.83430 -16.36878 -16.30426 -16.22752 -16.06849 -15.69854 -15.45089 -15.40037 -15.10605 -15.01861 -14.92714 -14.84995 -14.37820 -14.27565 -14.19375 -14.04298 -13.89270 -13.61841 -13.52368 -13.33449 -13.20302 -12.83758 -12.77993 -12.59632 -12.11190 -12.06123 -11.94489 -11.52881 -11.52094 -11.24321 -11.14192 -10.88484 -10.77828 -10.59017 -10.15684 -10.07106 -9.95030 -9.08359 -8.69246 -4.93001 -0.69931 0.34219 0.40875 0.49504 0.74598 1.30113 1.58173 1.68286 1.75784 1.94617 2.00217 2.59411 3.00045 3.37322 3.42301 3.45697 3.54982 3.62569 3.63959 3.72640 3.78095 3.82845 3.87322 4.01322 4.04733 4.25956 4.27731 4.28053 4.30504 4.33650 4.37190 4.42322 4.52272 4.54880 4.64383 4.68220 4.73213 4.76533 4.82156 4.87098 4.89517 4.91882 5.01138 5.04631 5.08646 5.12696 5.16299 5.20492 5.26386 5.41418 5.50067 5.55106 5.65300 5.79083 5.93514 6.41413 6.46478 7.09273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.323 6.323 3 C -0.062 4.062 4 C -0.088 4.088 5 H 0.099 0.901 6 C -0.118 4.118 7 C 0.110 3.890 8 H 0.088 0.912 9 N -0.695 5.695 10 C 0.558 3.442 11 O -0.580 6.580 12 C -0.152 4.152 13 C -0.070 4.070 14 C -0.122 4.122 15 C -0.022 4.022 16 C -0.060 4.060 17 C -0.108 4.108 18 C -0.101 4.101 19 C -0.115 4.115 20 C -0.082 4.082 21 O -0.548 6.548 22 Si 0.763 3.237 23 C -0.122 4.122 24 C -0.107 4.107 25 C -0.120 4.120 26 C -0.075 4.075 27 C -0.143 4.143 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.414 0.586 36 H 0.129 0.871 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.386 0.614 42 H -0.305 1.305 43 H -0.282 1.282 44 H 0.143 0.857 45 H 0.146 0.854 46 H 0.156 0.844 47 H 0.155 0.845 48 H 0.058 0.942 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.098 -0.550 -2.655 4.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.098 6.098 3 C -0.210 4.210 4 C -0.107 4.107 5 H 0.117 0.883 6 C -0.158 4.158 7 C 0.005 3.995 8 H 0.106 0.894 9 N -0.347 5.347 10 C 0.348 3.652 11 O -0.460 6.460 12 C -0.156 4.156 13 C -0.089 4.089 14 C -0.140 4.140 15 C -0.022 4.022 16 C -0.060 4.060 17 C -0.125 4.125 18 C -0.119 4.119 19 C -0.116 4.116 20 C -0.191 4.191 21 O -0.356 6.356 22 Si 0.669 3.331 23 C -0.139 4.139 24 C -0.125 4.125 25 C -0.138 4.138 26 C -0.093 4.093 27 C -0.181 4.181 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.122 0.878 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.129 0.871 34 H 0.109 0.891 35 H 0.252 0.748 36 H 0.146 0.854 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.151 0.849 40 H 0.144 0.856 41 H 0.235 0.765 42 H -0.233 1.233 43 H -0.209 1.209 44 H 0.160 0.840 45 H 0.163 0.837 46 H 0.173 0.827 47 H 0.173 0.827 48 H 0.077 0.923 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.755 -1.270 -2.001 2.949 hybrid contribution -0.957 1.660 -0.888 2.112 sum -2.712 0.390 -2.889 3.981 Atomic orbital electron populations 1.23402 0.91806 1.07132 1.05717 1.87222 1.10198 1.14153 1.98187 1.23425 0.99301 0.92395 1.05859 1.22329 0.92503 0.98016 0.97899 0.88308 1.23348 0.96712 0.95881 0.99879 1.21898 0.83086 0.97251 0.97280 0.89429 1.45484 1.05664 1.60815 1.22723 1.18570 0.84419 0.77908 0.84342 1.90770 1.87468 1.45475 1.22335 1.19977 0.93078 1.05139 0.97358 1.21268 0.91422 0.96548 0.99650 1.21393 0.98811 0.98547 0.95206 1.19153 0.92901 0.96207 0.93952 1.18933 0.92318 0.99613 0.95109 1.21525 0.99294 0.97172 0.94531 1.21117 0.91546 0.99112 1.00114 1.20446 0.95987 0.99788 0.95347 1.25209 1.00609 0.99322 0.93982 1.86579 1.92657 1.24543 1.31830 0.94059 0.74275 0.81893 0.82907 1.21171 0.98995 0.98626 0.95100 1.21470 0.91308 0.99064 1.00617 1.21468 0.90964 1.00202 1.01150 1.21453 0.99795 0.95009 0.93046 1.23494 0.98491 0.98811 0.97349 0.89780 0.89530 0.87824 0.89231 0.88662 0.87071 0.89072 0.74785 0.85354 0.83322 0.83633 0.84909 0.85640 0.76502 1.23330 1.20877 0.84010 0.83682 0.82668 0.82704 0.92282 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.36 10.76 113.37 1.22 1.58 16 2 S -0.32 -0.44 22.37 -56.49 -1.26 -1.70 16 3 C -0.06 0.25 5.78 71.98 0.42 0.67 16 4 C -0.09 0.40 3.53 -10.27 -0.04 0.37 16 5 H 0.10 -0.42 8.13 -2.39 -0.02 -0.44 16 6 C -0.12 0.77 7.39 31.12 0.23 1.00 16 7 C 0.11 -0.07 4.32 45.52 0.20 0.13 16 8 H 0.09 0.33 7.46 -2.38 -0.02 0.31 16 9 N -0.70 0.33 5.21 -443.01 -2.31 -1.98 16 10 C 0.56 3.54 7.77 86.75 0.67 4.22 16 11 O -0.58 -8.66 15.93 -3.94 -0.06 -8.73 16 12 C -0.15 -0.46 5.88 -20.06 -0.12 -0.58 16 13 C -0.07 -0.27 9.58 22.49 0.22 -0.05 16 14 C -0.12 -0.05 9.41 22.44 0.21 0.16 16 15 C -0.02 0.01 5.88 -20.00 -0.12 -0.11 16 16 C -0.06 0.04 5.88 -20.05 -0.12 -0.08 16 17 C -0.11 0.20 9.43 22.49 0.21 0.42 16 18 C -0.10 0.10 9.67 22.24 0.21 0.32 16 19 C -0.12 0.14 5.36 -19.82 -0.11 0.03 16 20 C -0.08 0.12 2.80 71.23 0.20 0.32 16 21 O -0.55 -0.99 12.83 -148.98 -1.91 -2.90 16 22 Si 0.76 -1.83 29.87 68.60 2.05 0.22 16 23 C -0.12 0.27 8.65 22.24 0.19 0.46 16 24 C -0.11 0.19 9.43 22.49 0.21 0.41 16 25 C -0.12 0.35 9.41 22.44 0.21 0.56 16 26 C -0.07 0.21 9.52 22.49 0.21 0.42 16 27 C -0.14 0.14 7.43 31.12 0.23 0.37 16 28 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 29 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H 0.10 -0.38 8.14 -2.38 -0.02 -0.40 16 31 H 0.09 -0.44 7.84 -2.39 -0.02 -0.46 16 32 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H 0.11 -0.92 8.10 -2.39 -0.02 -0.94 16 34 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 35 H 0.41 -2.66 6.72 -92.71 -0.62 -3.28 16 36 H 0.13 0.68 7.64 -2.91 -0.02 0.66 16 37 H 0.15 -0.54 6.19 -2.91 -0.02 -0.55 16 38 H 0.15 -0.90 6.19 -2.91 -0.02 -0.92 16 39 H 0.13 -0.30 8.06 -2.91 -0.02 -0.32 16 40 H 0.13 -0.39 7.96 -2.38 -0.02 -0.40 16 41 H 0.39 -1.37 8.70 -74.05 -0.64 -2.01 16 42 H -0.30 -1.74 7.11 99.48 0.71 -1.03 16 43 H -0.28 -0.33 7.00 99.48 0.70 0.36 16 44 H 0.14 -0.77 4.82 -2.91 -0.01 -0.78 16 45 H 0.15 -0.79 6.19 -2.91 -0.02 -0.80 16 46 H 0.16 -1.22 6.19 -2.91 -0.02 -1.24 16 47 H 0.16 -1.43 6.39 -2.91 -0.02 -1.45 16 48 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 49 H 0.10 -0.15 7.90 -2.39 -0.02 -0.16 16 Total: 0.00 -21.05 411.51 0.61 -20.44 By element: Atomic # 1 Polarization: -15.71 SS G_CDS: -0.24 Total: -15.95 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 4.35 Total: 10.61 kcal Atomic # 7 Polarization: 0.33 SS G_CDS: -2.31 Total: -1.98 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -1.97 Total: -11.63 kcal Atomic # 14 Polarization: -1.83 SS G_CDS: 2.05 Total: 0.22 kcal Atomic # 16 Polarization: -0.44 SS G_CDS: -1.26 Total: -1.70 kcal Total: -21.05 0.61 -20.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_13158362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.084 kcal (2) G-P(sol) polarization free energy of solvation -21.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds