Wall clock time and date at job start Sun Mar 7 2021 06:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81403 * 103.00262 * 2 1 4 4 C 1.52999 * 109.47118 * 180.02562 * 3 2 1 5 5 H 1.08994 * 112.85117 * 43.80021 * 4 3 2 6 6 C 1.53781 * 113.61357 * 174.99964 * 4 3 2 7 7 C 1.53783 * 87.08289 * 140.06178 * 6 4 3 8 8 H 1.08997 * 113.61185 * 219.93488 * 7 6 4 9 9 N 1.46495 * 113.61024 * 89.11205 * 7 6 4 10 10 C 1.34782 * 119.99946 * 155.00034 * 9 7 6 11 11 O 1.21654 * 119.99478 * 0.02562 * 10 9 7 12 12 C 1.47056 * 120.00473 * 180.02562 * 10 9 7 13 13 C 1.35859 * 125.42815 * 179.97438 * 12 10 9 14 14 C 1.41593 * 107.72847 * 180.02562 * 13 12 10 15 15 C 1.40067 * 133.38464 * 180.02562 * 14 13 12 16 16 C 1.36477 * 119.82888 * 180.02562 * 15 14 13 17 17 C 1.38889 * 120.61774 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.67682 * 180.02562 * 17 16 15 19 19 O 1.42896 * 109.47533 * 120.00100 * 18 17 16 20 20 Si 1.86296 * 109.47026 * 359.97438 * 18 17 16 21 21 C 1.37718 * 120.65183 * 359.97438 * 17 16 15 22 22 C 1.39183 * 119.80111 * 0.02562 * 21 17 16 23 23 N 1.37495 * 133.17893 * 179.97438 * 22 21 17 24 24 C 1.53781 * 113.68828 * 272.53057 * 4 3 2 25 25 H 1.09005 * 109.46955 * 300.00428 * 1 2 3 26 26 H 1.09005 * 109.47088 * 59.99954 * 1 2 3 27 27 H 1.08997 * 109.47447 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46969 * 59.99764 * 3 2 1 29 29 H 1.09001 * 109.46733 * 300.00204 * 3 2 1 30 30 H 1.09005 * 113.61340 * 25.51108 * 6 4 3 31 31 H 1.08997 * 113.61619 * 254.61437 * 6 4 3 32 32 H 0.97000 * 120.00401 * 335.00270 * 9 7 6 33 33 H 1.08002 * 126.13434 * 359.97438 * 13 12 10 34 34 H 1.08003 * 120.08353 * 359.97082 * 15 14 13 35 35 H 1.08003 * 119.68882 * 179.97438 * 16 15 14 36 36 H 1.08999 * 109.46858 * 239.99936 * 18 17 16 37 37 H 0.96703 * 114.00309 * 180.02562 * 19 18 17 38 38 H 1.48501 * 109.99818 * 60.00575 * 20 18 17 39 39 H 1.48505 * 109.99973 * 181.32098 * 20 18 17 40 40 H 1.07997 * 120.09761 * 180.02562 * 21 17 16 41 41 H 0.96994 * 125.60764 * 0.26592 * 23 22 21 42 42 H 1.09008 * 113.60900 * 105.46128 * 24 4 3 43 43 H 1.09001 * 113.61777 * 334.56264 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 1 4.2443 1.2673 -0.6961 6 6 4.1963 3.4040 -0.1235 7 6 5.2890 3.0695 0.9055 8 1 5.4554 3.8593 1.6380 9 7 6.5319 2.5805 0.3036 10 6 7.7000 2.7215 0.9610 11 8 7.7221 3.2544 2.0544 12 6 8.9478 2.2312 0.3566 13 6 10.1816 2.3160 0.9190 14 6 11.1063 1.7317 0.0198 15 6 12.4926 1.5353 0.0580 16 6 13.1209 0.9252 -0.9887 17 6 12.3984 0.4955 -2.0943 18 6 13.1137 -0.1762 -3.2381 19 8 12.5932 -1.4949 -3.4169 20 14 14.9353 -0.2728 -2.8602 21 6 11.0344 0.6762 -2.1551 22 6 10.3710 1.2957 -1.1001 23 7 9.0520 1.6109 -0.8734 24 6 4.3639 1.9476 1.4059 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8032 2.2371 0.8899 29 1 1.8032 2.2371 -0.8900 30 1 3.4599 4.1213 0.2391 31 1 4.5873 3.6588 -1.1085 32 1 6.5142 2.1552 -0.5680 33 1 10.4153 2.7517 1.8792 34 1 13.0629 1.8665 0.9133 35 1 14.1900 0.7753 -0.9570 36 1 12.9623 0.4009 -4.1503 37 1 13.0087 -1.9874 -4.1379 38 1 15.1555 -1.0570 -1.6184 39 1 15.6565 -0.9045 -3.9943 40 1 10.4814 0.3382 -3.0190 41 1 8.3153 1.4254 -1.4765 42 1 4.8904 1.0263 1.6556 43 1 3.6734 2.2666 2.1867 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535148_13158378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:36:04 Heat of formation + Delta-G solvation = 20.657338 kcal Electronic energy + Delta-G solvation = -25018.985978 eV Core-core repulsion = 21351.199612 eV Total energy + Delta-G solvation = -3667.786366 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.119 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.66371 -41.23505 -39.55515 -38.75125 -37.06922 -34.83492 -33.26986 -31.41659 -30.57186 -30.37577 -29.76798 -26.98644 -26.89659 -24.79185 -23.69898 -23.07937 -21.90311 -21.23317 -20.45133 -19.58120 -18.54977 -17.99061 -17.44068 -17.23259 -16.86514 -16.47665 -16.41515 -16.09098 -15.73087 -15.61234 -15.20398 -14.99865 -14.97168 -14.85178 -14.65073 -14.43649 -14.22178 -14.06250 -13.84945 -13.73193 -13.47712 -13.45077 -13.00700 -12.67161 -12.30920 -12.26637 -12.10153 -11.67045 -11.65233 -11.38846 -11.25199 -10.97933 -10.90334 -10.48810 -10.25679 -9.27379 -8.77391 -8.70503 -4.94119 -0.29843 0.57171 0.62578 1.02613 1.28765 1.55712 1.61261 1.77022 1.89945 1.98813 2.26880 2.77318 3.25141 3.32945 3.36565 3.52501 3.57006 3.63772 3.67640 3.85749 4.05703 4.09120 4.11866 4.15980 4.21591 4.22532 4.33056 4.36644 4.40829 4.49015 4.54229 4.57225 4.59993 4.69496 4.70751 4.85745 4.91656 4.94118 4.97432 5.00720 5.32250 5.43048 5.44993 5.59011 5.65272 6.00311 6.20606 6.35905 6.41703 6.99439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.265 6.265 3 C -0.075 4.075 4 C -0.096 4.096 5 H 0.097 0.903 6 C -0.135 4.135 7 C 0.120 3.880 8 H 0.111 0.889 9 N -0.712 5.712 10 C 0.589 3.411 11 O -0.515 6.515 12 C 0.011 3.989 13 C -0.097 4.097 14 C -0.117 4.117 15 C -0.050 4.050 16 C -0.143 4.143 17 C -0.041 4.041 18 C -0.076 4.076 19 O -0.537 6.537 20 Si 0.687 3.313 21 C -0.103 4.103 22 C 0.117 3.883 23 N -0.579 5.579 24 C -0.142 4.142 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.396 0.604 33 H 0.159 0.841 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.077 0.923 37 H 0.380 0.620 38 H -0.254 1.254 39 H -0.263 1.263 40 H 0.125 0.875 41 H 0.417 0.583 42 H 0.076 0.924 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.353 2.414 -4.287 5.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.039 6.039 3 C -0.223 4.223 4 C -0.116 4.116 5 H 0.115 0.885 6 C -0.175 4.175 7 C 0.015 3.985 8 H 0.129 0.871 9 N -0.363 5.363 10 C 0.376 3.624 11 O -0.389 6.389 12 C -0.097 4.097 13 C -0.124 4.124 14 C -0.122 4.122 15 C -0.069 4.069 16 C -0.161 4.161 17 C -0.043 4.043 18 C -0.186 4.186 19 O -0.344 6.344 20 Si 0.588 3.412 21 C -0.124 4.124 22 C 0.007 3.993 23 N -0.184 5.184 24 C -0.181 4.181 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.120 0.880 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.231 0.769 33 H 0.177 0.823 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.095 0.905 37 H 0.228 0.772 38 H -0.178 1.178 39 H -0.188 1.188 40 H 0.143 0.857 41 H 0.254 0.746 42 H 0.095 0.905 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.550 1.597 -2.897 3.353 hybrid contribution -1.904 -0.381 -1.579 2.503 sum -2.454 1.216 -4.476 5.247 Atomic orbital electron populations 1.23397 0.93934 1.06766 1.04973 1.87044 1.07640 1.11169 1.98052 1.23420 0.99196 0.94634 1.05099 1.22389 0.92745 0.97441 0.99004 0.88490 1.23409 0.97770 0.96319 0.99987 1.21861 0.82452 0.97649 0.96558 0.87128 1.45544 1.06537 1.61943 1.22264 1.17180 0.81784 0.78688 0.84786 1.90884 1.85928 1.42710 1.19400 1.20040 0.95409 1.06166 0.88132 1.20974 0.89511 1.01704 1.00223 1.18218 0.94002 1.04834 0.95116 1.20352 0.91843 0.96509 0.98157 1.20414 0.99435 1.02448 0.93842 1.18928 0.92851 0.97881 0.94630 1.24821 1.09418 0.85185 0.99171 1.86595 1.63639 1.26307 1.57839 0.94923 0.74663 0.91137 0.80514 1.19825 0.93578 1.01510 0.97476 1.18279 0.83402 1.00719 0.96936 1.41876 1.07385 1.51884 1.17228 1.23513 0.98448 0.99749 0.96375 0.90396 0.90450 0.87950 0.89722 0.89822 0.88058 0.90375 0.76949 0.82335 0.84863 0.85264 0.90497 0.77223 1.17847 1.18796 0.85672 0.74551 0.90503 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.17 10.76 101.05 1.09 1.25 16 2 S -0.27 -0.17 22.37 -107.50 -2.40 -2.57 16 3 C -0.08 0.13 5.78 37.16 0.21 0.35 16 4 C -0.10 0.22 3.53 -89.81 -0.32 -0.10 16 5 H 0.10 -0.19 8.13 -51.93 -0.42 -0.61 16 6 C -0.13 0.42 7.39 -25.92 -0.19 0.23 16 7 C 0.12 -0.13 4.32 -67.12 -0.29 -0.42 16 8 H 0.11 0.04 7.46 -51.93 -0.39 -0.35 16 9 N -0.71 0.67 5.26 -54.21 -0.29 0.39 16 10 C 0.59 1.28 7.80 -12.68 -0.10 1.18 16 11 O -0.51 -2.96 16.44 5.23 0.09 -2.87 16 12 C 0.01 0.02 6.96 -82.29 -0.57 -0.55 16 13 C -0.10 -0.23 10.53 -39.16 -0.41 -0.64 16 14 C -0.12 -0.26 6.16 -106.93 -0.66 -0.92 16 15 C -0.05 -0.05 10.06 -39.53 -0.40 -0.44 16 16 C -0.14 -0.09 8.59 -39.98 -0.34 -0.44 16 17 C -0.04 -0.05 5.43 -104.57 -0.57 -0.62 16 18 C -0.08 0.02 2.80 36.01 0.10 0.12 16 19 O -0.54 -0.51 12.73 -35.23 -0.45 -0.95 16 20 Si 0.69 -0.70 29.75 -169.99 -5.06 -5.76 16 21 C -0.10 -0.14 9.61 -39.42 -0.38 -0.52 16 22 C 0.12 0.20 7.25 -83.97 -0.61 -0.41 16 23 N -0.58 0.09 6.07 -7.36 -0.04 0.05 16 24 C -0.14 0.16 7.43 -25.92 -0.19 -0.03 16 25 H 0.08 -0.15 8.14 -51.92 -0.42 -0.58 16 26 H 0.08 -0.16 8.14 -51.92 -0.42 -0.58 16 27 H 0.10 -0.17 8.14 -51.93 -0.42 -0.60 16 28 H 0.08 -0.18 7.85 -51.93 -0.41 -0.59 16 29 H 0.08 -0.19 8.14 -51.92 -0.42 -0.62 16 30 H 0.10 -0.38 8.10 -51.93 -0.42 -0.80 16 31 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 32 H 0.40 -1.35 7.76 -40.82 -0.32 -1.67 16 33 H 0.16 0.25 8.06 -52.49 -0.42 -0.18 16 34 H 0.13 -0.17 8.06 -52.48 -0.42 -0.59 16 35 H 0.13 -0.17 4.82 -52.48 -0.25 -0.42 16 36 H 0.08 -0.16 7.96 -51.93 -0.41 -0.57 16 37 H 0.38 -1.14 8.74 45.56 0.40 -0.75 16 38 H -0.25 -0.57 7.11 56.52 0.40 -0.17 16 39 H -0.26 -0.26 7.11 56.52 0.40 0.14 16 40 H 0.13 0.02 8.06 -52.49 -0.42 -0.40 16 41 H 0.42 -1.34 8.12 -40.82 -0.33 -1.67 16 42 H 0.08 0.03 8.14 -51.92 -0.42 -0.39 16 43 H 0.10 -0.14 7.90 -51.93 -0.41 -0.55 16 LS Contribution 371.12 15.07 5.59 5.59 Total: 0.00 -8.58 371.12 -12.16 -20.74 By element: Atomic # 1 Polarization: -6.67 SS G_CDS: -5.97 Total: -12.64 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -3.63 Total: -1.96 kcal Atomic # 7 Polarization: 0.76 SS G_CDS: -0.33 Total: 0.43 kcal Atomic # 8 Polarization: -3.47 SS G_CDS: -0.36 Total: -3.83 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: -5.06 Total: -5.76 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -2.40 Total: -2.57 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -8.58 -12.16 -20.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_13158378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.396 kcal (2) G-P(sol) polarization free energy of solvation -8.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds