Wall clock time and date at job start Sun Mar 7 2021 06:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81403 * 103.00262 * 2 1 4 4 C 1.52999 * 109.47118 * 180.02562 * 3 2 1 5 5 H 1.08994 * 112.85117 * 43.80021 * 4 3 2 6 6 C 1.53781 * 113.61357 * 174.99964 * 4 3 2 7 7 C 1.53783 * 87.08289 * 140.06178 * 6 4 3 8 8 H 1.08997 * 113.61185 * 219.93488 * 7 6 4 9 9 N 1.46495 * 113.61024 * 89.11205 * 7 6 4 10 10 C 1.34782 * 119.99946 * 155.00034 * 9 7 6 11 11 O 1.21654 * 119.99478 * 0.02562 * 10 9 7 12 12 C 1.47056 * 120.00473 * 180.02562 * 10 9 7 13 13 C 1.35859 * 125.42815 * 179.97438 * 12 10 9 14 14 C 1.41593 * 107.72847 * 180.02562 * 13 12 10 15 15 C 1.40067 * 133.38464 * 180.02562 * 14 13 12 16 16 C 1.36477 * 119.82888 * 180.02562 * 15 14 13 17 17 C 1.38889 * 120.61774 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.67682 * 180.02562 * 17 16 15 19 19 O 1.42896 * 109.47533 * 120.00100 * 18 17 16 20 20 Si 1.86296 * 109.47026 * 359.97438 * 18 17 16 21 21 C 1.37718 * 120.65183 * 359.97438 * 17 16 15 22 22 C 1.39183 * 119.80111 * 0.02562 * 21 17 16 23 23 N 1.37495 * 133.17893 * 179.97438 * 22 21 17 24 24 C 1.53781 * 113.68828 * 272.53057 * 4 3 2 25 25 H 1.09005 * 109.46955 * 300.00428 * 1 2 3 26 26 H 1.09005 * 109.47088 * 59.99954 * 1 2 3 27 27 H 1.08997 * 109.47447 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46969 * 59.99764 * 3 2 1 29 29 H 1.09001 * 109.46733 * 300.00204 * 3 2 1 30 30 H 1.09005 * 113.61340 * 25.51108 * 6 4 3 31 31 H 1.08997 * 113.61619 * 254.61437 * 6 4 3 32 32 H 0.97000 * 120.00401 * 335.00270 * 9 7 6 33 33 H 1.08002 * 126.13434 * 359.97438 * 13 12 10 34 34 H 1.08003 * 120.08353 * 359.97082 * 15 14 13 35 35 H 1.08003 * 119.68882 * 179.97438 * 16 15 14 36 36 H 1.08999 * 109.46858 * 239.99936 * 18 17 16 37 37 H 0.96703 * 114.00309 * 180.02562 * 19 18 17 38 38 H 1.48501 * 109.99818 * 60.00575 * 20 18 17 39 39 H 1.48505 * 109.99973 * 181.32098 * 20 18 17 40 40 H 1.07997 * 120.09761 * 180.02562 * 21 17 16 41 41 H 0.96994 * 125.60764 * 0.26592 * 23 22 21 42 42 H 1.09008 * 113.60900 * 105.46128 * 24 4 3 43 43 H 1.09001 * 113.61777 * 334.56264 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 1 4.2443 1.2673 -0.6961 6 6 4.1963 3.4040 -0.1235 7 6 5.2890 3.0695 0.9055 8 1 5.4554 3.8593 1.6380 9 7 6.5319 2.5805 0.3036 10 6 7.7000 2.7215 0.9610 11 8 7.7221 3.2544 2.0544 12 6 8.9478 2.2312 0.3566 13 6 10.1816 2.3160 0.9190 14 6 11.1063 1.7317 0.0198 15 6 12.4926 1.5353 0.0580 16 6 13.1209 0.9252 -0.9887 17 6 12.3984 0.4955 -2.0943 18 6 13.1137 -0.1762 -3.2381 19 8 12.5932 -1.4949 -3.4169 20 14 14.9353 -0.2728 -2.8602 21 6 11.0344 0.6762 -2.1551 22 6 10.3710 1.2957 -1.1001 23 7 9.0520 1.6109 -0.8734 24 6 4.3639 1.9476 1.4059 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8032 2.2371 0.8899 29 1 1.8032 2.2371 -0.8900 30 1 3.4599 4.1213 0.2391 31 1 4.5873 3.6588 -1.1085 32 1 6.5142 2.1552 -0.5680 33 1 10.4153 2.7517 1.8792 34 1 13.0629 1.8665 0.9133 35 1 14.1900 0.7753 -0.9570 36 1 12.9623 0.4009 -4.1503 37 1 13.0087 -1.9874 -4.1379 38 1 15.1555 -1.0570 -1.6184 39 1 15.6565 -0.9045 -3.9943 40 1 10.4814 0.3382 -3.0190 41 1 8.3153 1.4254 -1.4765 42 1 4.8904 1.0263 1.6556 43 1 3.6734 2.2666 2.1867 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_13158378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:36:03 Heat of formation + Delta-G solvation = 22.379890 kcal Electronic energy + Delta-G solvation = -25018.911282 eV Core-core repulsion = 21351.199612 eV Total energy + Delta-G solvation = -3667.711671 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.119 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.73685 -41.24564 -39.59946 -38.80361 -37.09533 -34.90328 -33.33104 -31.44097 -30.52664 -30.41044 -29.65652 -27.02356 -26.75725 -24.79418 -23.67171 -23.13457 -21.95472 -21.31622 -20.39583 -19.62691 -18.53982 -18.03576 -17.41842 -17.23939 -16.90272 -16.54490 -16.45944 -16.05869 -15.69358 -15.59806 -15.16744 -15.06271 -14.98741 -14.91547 -14.67099 -14.33875 -14.27996 -13.94742 -13.88860 -13.62321 -13.50057 -13.36883 -12.92063 -12.70683 -12.33074 -12.18257 -12.15841 -11.70367 -11.57060 -11.45499 -11.28665 -10.98721 -10.91769 -10.46373 -10.29415 -9.34349 -8.83787 -8.72876 -4.87296 -0.39270 0.51246 0.71503 0.91253 1.33397 1.64118 1.65226 1.70971 1.90684 2.00812 2.13006 2.72313 3.37161 3.39826 3.50427 3.52247 3.63860 3.69305 3.76858 3.85774 4.03471 4.21142 4.24209 4.27910 4.29551 4.30908 4.38064 4.42968 4.45150 4.49683 4.60835 4.69414 4.73990 4.78716 4.84499 4.87458 4.96437 4.97723 4.99241 5.07578 5.29355 5.38483 5.47540 5.53431 5.56918 5.96273 6.20675 6.39433 6.61281 6.89892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.327 6.327 3 C -0.061 4.061 4 C -0.090 4.090 5 H 0.096 0.904 6 C -0.117 4.117 7 C 0.112 3.888 8 H 0.095 0.905 9 N -0.696 5.696 10 C 0.589 3.411 11 O -0.557 6.557 12 C 0.009 3.991 13 C -0.115 4.115 14 C -0.136 4.136 15 C -0.057 4.057 16 C -0.149 4.149 17 C -0.052 4.052 18 C -0.083 4.083 19 O -0.558 6.558 20 Si 0.765 3.235 21 C -0.111 4.111 22 C 0.107 3.893 23 N -0.565 5.565 24 C -0.143 4.143 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.410 0.590 33 H 0.157 0.843 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.100 0.900 37 H 0.395 0.605 38 H -0.301 1.301 39 H -0.287 1.287 40 H 0.136 0.864 41 H 0.430 0.570 42 H 0.057 0.943 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.917 2.936 -5.758 6.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.101 6.101 3 C -0.209 4.209 4 C -0.109 4.109 5 H 0.114 0.886 6 C -0.157 4.157 7 C 0.007 3.993 8 H 0.113 0.887 9 N -0.347 5.347 10 C 0.376 3.624 11 O -0.435 6.435 12 C -0.101 4.101 13 C -0.142 4.142 14 C -0.140 4.140 15 C -0.076 4.076 16 C -0.167 4.167 17 C -0.054 4.054 18 C -0.192 4.192 19 O -0.368 6.368 20 Si 0.671 3.329 21 C -0.132 4.132 22 C -0.003 4.003 23 N -0.171 5.171 24 C -0.182 4.182 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.121 0.879 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.132 0.868 31 H 0.109 0.891 32 H 0.247 0.753 33 H 0.175 0.825 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.117 0.883 37 H 0.246 0.754 38 H -0.228 1.228 39 H -0.215 1.215 40 H 0.153 0.847 41 H 0.271 0.729 42 H 0.076 0.924 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.159 2.112 -4.435 5.047 hybrid contribution -1.727 -0.605 -1.115 2.143 sum -2.886 1.507 -5.550 6.435 Atomic orbital electron populations 1.23399 0.91681 1.07127 1.05772 1.87247 1.10352 1.14326 1.98196 1.23426 0.99273 0.92280 1.05953 1.22339 0.92554 0.98089 0.97943 0.88601 1.23353 0.96678 0.95812 0.99861 1.21942 0.82629 0.97377 0.97366 0.88699 1.45441 1.05865 1.60922 1.22455 1.17264 0.82553 0.78206 0.84328 1.90858 1.86559 1.44873 1.21243 1.19957 0.95048 1.06366 0.88722 1.21106 0.90139 1.02378 1.00570 1.18440 0.94741 1.05413 0.95432 1.20623 0.91644 0.96378 0.98931 1.20651 1.00298 1.02130 0.93640 1.19230 0.93109 0.97792 0.95237 1.24994 1.09465 0.85051 0.99702 1.86548 1.64401 1.26981 1.58913 0.94043 0.72896 0.89478 0.76505 1.19988 0.93868 1.01604 0.97723 1.18435 0.83926 1.00920 0.97045 1.41770 1.07460 1.51058 1.16767 1.23509 0.98506 0.98768 0.97379 0.89688 0.89502 0.87877 0.89059 0.88652 0.86765 0.89106 0.75335 0.82492 0.83190 0.83728 0.88254 0.75425 1.22829 1.21461 0.84650 0.72891 0.92369 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.36 10.76 113.37 1.22 1.58 16 2 S -0.33 -0.48 22.37 -56.49 -1.26 -1.74 16 3 C -0.06 0.27 5.78 71.98 0.42 0.69 16 4 C -0.09 0.46 3.53 -10.27 -0.04 0.42 16 5 H 0.10 -0.43 8.13 -2.39 -0.02 -0.45 16 6 C -0.12 0.88 7.39 31.12 0.23 1.11 16 7 C 0.11 -0.22 4.32 45.52 0.20 -0.02 16 8 H 0.09 0.17 7.46 -2.39 -0.02 0.16 16 9 N -0.70 1.05 5.26 -443.64 -2.33 -1.28 16 10 C 0.59 3.30 7.80 86.55 0.68 3.98 16 11 O -0.56 -7.56 16.44 -4.20 -0.07 -7.62 16 12 C 0.01 0.04 6.96 39.91 0.28 0.32 16 13 C -0.11 -0.71 10.53 22.55 0.24 -0.47 16 14 C -0.14 -0.73 6.16 -21.36 -0.13 -0.86 16 15 C -0.06 -0.14 10.06 22.30 0.22 0.09 16 16 C -0.15 -0.20 8.59 22.01 0.19 -0.01 16 17 C -0.05 -0.11 5.43 -19.83 -0.11 -0.22 16 18 C -0.08 0.12 2.80 71.24 0.20 0.32 16 19 O -0.56 -0.75 12.73 -148.98 -1.90 -2.65 16 20 Si 0.77 -1.81 29.75 68.60 2.04 0.23 16 21 C -0.11 -0.28 9.61 22.37 0.22 -0.07 16 22 C 0.11 0.40 7.25 39.13 0.28 0.68 16 23 N -0.56 0.03 6.07 -177.18 -1.08 -1.05 16 24 C -0.14 0.25 7.43 31.12 0.23 0.48 16 25 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 26 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 28 H 0.09 -0.50 7.85 -2.39 -0.02 -0.52 16 29 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 30 H 0.11 -1.08 8.10 -2.38 -0.02 -1.10 16 31 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 32 H 0.41 -2.95 7.76 -92.71 -0.72 -3.67 16 33 H 0.16 0.85 8.06 -2.91 -0.02 0.82 16 34 H 0.15 -0.32 8.06 -2.91 -0.02 -0.35 16 35 H 0.15 -0.41 4.82 -2.91 -0.01 -0.42 16 36 H 0.10 -0.58 7.96 -2.39 -0.02 -0.60 16 37 H 0.40 -2.63 8.74 -74.06 -0.65 -3.28 16 38 H -0.30 -1.62 7.11 99.48 0.71 -0.92 16 39 H -0.29 -0.49 7.11 99.48 0.71 0.22 16 40 H 0.14 -0.03 8.06 -2.91 -0.02 -0.06 16 41 H 0.43 -2.91 8.12 -92.71 -0.75 -3.66 16 42 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 43 H 0.10 -0.25 7.90 -2.39 -0.02 -0.27 16 Total: 0.00 -21.51 371.12 -1.30 -22.81 By element: Atomic # 1 Polarization: -15.68 SS G_CDS: -1.02 Total: -16.70 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 4.32 Total: 8.01 kcal Atomic # 7 Polarization: 1.08 SS G_CDS: -3.41 Total: -2.33 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -1.97 Total: -10.27 kcal Atomic # 14 Polarization: -1.81 SS G_CDS: 2.04 Total: 0.23 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -1.26 Total: -1.74 kcal Total: -21.51 -1.30 -22.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_13158378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.187 kcal (2) G-P(sol) polarization free energy of solvation -21.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds