Wall clock time and date at job start Sun Mar 7 2021 06:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81404 * 102.99730 * 2 1 4 4 C 1.52999 * 109.47190 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.84880 * 43.79917 * 4 3 2 6 6 C 1.53780 * 113.61470 * 174.99917 * 4 3 2 7 7 C 1.53776 * 87.08106 * 140.06383 * 6 4 3 8 8 H 1.08997 * 113.61505 * 219.93512 * 7 6 4 9 9 N 1.46497 * 113.61551 * 89.11321 * 7 6 4 10 10 C 1.34776 * 119.99885 * 154.99878 * 9 7 6 11 11 O 1.21283 * 120.00253 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00154 * 180.02562 * 10 9 7 13 13 C 1.50707 * 109.47235 * 180.02562 * 12 10 9 14 14 C 1.38268 * 119.93446 * 89.99894 * 13 12 10 15 15 C 1.38128 * 120.06562 * 179.97438 * 14 13 12 16 16 C 1.38826 * 119.93078 * 0.02562 * 15 14 13 17 17 N 1.40204 * 120.06131 * 179.97438 * 16 15 14 18 18 C 1.36564 * 125.66762 * 310.02289 * 17 16 15 19 19 C 1.34851 * 108.19940 * 179.97438 * 18 17 16 20 20 C 1.40944 * 107.46592 * 359.78532 * 19 18 17 21 21 C 1.34847 * 107.46880 * 0.35166 * 20 19 18 22 22 C 1.50699 * 125.89886 * 179.90800 * 21 20 19 23 23 O 1.42903 * 109.47152 * 149.69762 * 22 21 20 24 24 Si 1.86293 * 109.47431 * 29.69653 * 22 21 20 25 25 C 1.38823 * 119.86907 * 0.24853 * 16 15 14 26 26 C 1.38126 * 119.93668 * 359.51884 * 25 16 15 27 27 C 1.53777 * 113.68790 * 272.53435 * 4 3 2 28 28 H 1.08997 * 109.47112 * 60.00449 * 1 2 3 29 29 H 1.09002 * 109.46623 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47464 * 300.00056 * 1 2 3 31 31 H 1.08997 * 109.47541 * 59.99442 * 3 2 1 32 32 H 1.09007 * 109.46558 * 299.99821 * 3 2 1 33 33 H 1.08999 * 113.61475 * 25.51490 * 6 4 3 34 34 H 1.09002 * 113.61411 * 254.61138 * 6 4 3 35 35 H 0.97001 * 120.00605 * 335.00149 * 9 7 6 36 36 H 1.08997 * 109.46875 * 60.00298 * 12 10 9 37 37 H 1.09006 * 109.47083 * 300.00103 * 12 10 9 38 38 H 1.08000 * 119.97119 * 0.02562 * 14 13 12 39 39 H 1.07998 * 120.03297 * 180.02562 * 15 14 13 40 40 H 1.08001 * 125.90264 * 359.95837 * 18 17 16 41 41 H 1.07995 * 126.27108 * 180.02562 * 19 18 17 42 42 H 1.08006 * 126.26604 * 180.22787 * 20 19 18 43 43 H 1.09008 * 109.47393 * 269.69156 * 22 21 20 44 44 H 0.96700 * 114.00311 * 180.02562 * 23 22 21 45 45 H 1.48506 * 109.99973 * 59.99460 * 24 22 21 46 46 H 1.48493 * 110.00375 * 181.31561 * 24 22 21 47 47 H 1.08005 * 120.02947 * 179.74520 * 25 16 15 48 48 H 1.07999 * 119.96880 * 180.23195 * 26 25 16 49 49 H 1.09001 * 113.61990 * 105.45972 * 27 4 3 50 50 H 1.08999 * 113.61517 * 334.55128 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9401 -0.0006 5 1 4.2443 1.2675 -0.6962 6 6 4.1960 3.4043 -0.1235 7 6 5.2887 3.0697 0.9055 8 1 5.4552 3.8595 1.6380 9 7 6.5317 2.5809 0.3036 10 6 7.6997 2.7220 0.9610 11 8 7.7218 3.2533 2.0511 12 6 8.9785 2.2196 0.3417 13 6 10.1305 2.4969 1.2730 14 6 10.4922 1.5582 2.2216 15 6 11.5480 1.8093 3.0761 16 6 12.2457 3.0058 2.9822 17 7 13.3175 3.2637 3.8485 18 6 13.2924 3.1314 5.2075 19 6 14.5071 3.4692 5.6860 20 6 15.3137 3.8183 4.5842 21 6 14.5601 3.6885 3.4736 22 6 15.0127 3.9592 2.0619 23 8 14.3002 3.1083 1.1617 24 14 16.8395 3.6224 1.9201 25 6 11.8766 3.9487 2.0325 26 6 10.8230 3.6899 1.1775 27 6 4.3638 1.9477 1.4059 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8030 2.2372 0.8899 32 1 1.8030 2.2371 -0.8901 33 1 3.4597 4.1215 0.2391 34 1 4.5871 3.6590 -1.1086 35 1 6.5141 2.1556 -0.5680 36 1 9.1472 2.7289 -0.6071 37 1 8.9014 1.1461 0.1693 38 1 9.9493 0.6274 2.2940 39 1 11.8303 1.0756 3.8166 40 1 12.4460 2.8116 5.7972 41 1 14.8080 3.4683 6.7232 42 1 16.3459 4.1340 4.6226 43 1 14.8148 5.0012 1.8103 44 1 14.5415 3.2281 0.2330 45 1 17.1225 2.2049 2.2606 46 1 17.3046 3.9160 0.5408 47 1 12.4150 4.8821 1.9598 48 1 10.5378 4.4215 0.4360 49 1 4.8903 1.0266 1.6557 50 1 3.6733 2.2668 2.1866 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_13287746.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:36:23 Heat of formation + Delta-G solvation = 46.461992 kcal Electronic energy + Delta-G solvation = -30444.153011 eV Core-core repulsion = 26338.184240 eV Total energy + Delta-G solvation = -4105.968771 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.150 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.66567 -41.41511 -40.18467 -39.13486 -37.83967 -34.86845 -34.62059 -32.18184 -31.90939 -31.17450 -30.53661 -29.65255 -27.77420 -26.71958 -25.99874 -24.18344 -23.99642 -23.20653 -21.72511 -21.40107 -20.50726 -20.26045 -18.80049 -18.44357 -18.24949 -17.36335 -17.24029 -17.03717 -16.48765 -16.26940 -16.02510 -15.81006 -15.69212 -15.45363 -15.36156 -15.03525 -14.88975 -14.73110 -14.51495 -14.33885 -14.25973 -14.16738 -13.91116 -13.63605 -13.53642 -13.34302 -13.20399 -13.16331 -13.05515 -12.80961 -12.75256 -12.61102 -12.12322 -12.09083 -12.06845 -11.51460 -11.23731 -11.04675 -10.90215 -10.76860 -10.31188 -10.07956 -9.98798 -9.15648 -9.00737 -8.71163 -4.90427 0.00526 0.34006 0.72847 1.03717 1.43578 1.59407 1.61007 1.66367 1.90200 1.98413 2.09840 2.12722 2.72362 3.21167 3.43878 3.55524 3.60087 3.71510 3.72714 3.73885 3.81763 3.87119 3.98128 4.16147 4.21424 4.26601 4.28639 4.30653 4.32296 4.38675 4.42101 4.50982 4.51714 4.52617 4.62631 4.64352 4.73812 4.76032 4.81654 4.85267 4.87464 4.94830 5.00822 5.05712 5.17759 5.18601 5.20456 5.28327 5.36405 5.48233 5.60040 5.78874 5.96918 6.21813 6.48235 6.52617 6.54951 7.24451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.323 6.323 3 C -0.063 4.063 4 C -0.087 4.087 5 H 0.100 0.900 6 C -0.119 4.119 7 C 0.114 3.886 8 H 0.082 0.918 9 N -0.702 5.702 10 C 0.516 3.484 11 O -0.579 6.579 12 C -0.096 4.096 13 C -0.071 4.071 14 C -0.099 4.099 15 C -0.135 4.135 16 C 0.122 3.878 17 N -0.400 5.400 18 C -0.031 4.031 19 C -0.195 4.195 20 C -0.198 4.198 21 C 0.011 3.989 22 C -0.060 4.060 23 O -0.550 6.550 24 Si 0.795 3.205 25 C -0.099 4.099 26 C -0.095 4.095 27 C -0.144 4.144 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.417 0.583 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.140 0.860 39 H 0.123 0.877 40 H 0.170 0.830 41 H 0.160 0.840 42 H 0.175 0.825 43 H 0.094 0.906 44 H 0.393 0.607 45 H -0.312 1.312 46 H -0.275 1.275 47 H 0.124 0.876 48 H 0.145 0.855 49 H 0.059 0.941 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.401 2.631 -6.094 7.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.097 6.097 3 C -0.211 4.211 4 C -0.106 4.106 5 H 0.118 0.882 6 C -0.159 4.159 7 C 0.008 3.992 8 H 0.100 0.900 9 N -0.354 5.354 10 C 0.303 3.697 11 O -0.458 6.458 12 C -0.135 4.135 13 C -0.071 4.071 14 C -0.117 4.117 15 C -0.154 4.154 16 C 0.032 3.968 17 N -0.073 5.073 18 C -0.159 4.159 19 C -0.219 4.219 20 C -0.222 4.222 21 C -0.098 4.098 22 C -0.168 4.168 23 O -0.360 6.360 24 Si 0.698 3.302 25 C -0.118 4.118 26 C -0.113 4.113 27 C -0.183 4.183 28 H 0.105 0.895 29 H 0.122 0.878 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.110 0.890 35 H 0.254 0.746 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.141 0.859 40 H 0.187 0.813 41 H 0.177 0.823 42 H 0.192 0.808 43 H 0.112 0.888 44 H 0.244 0.756 45 H -0.240 1.240 46 H -0.201 1.201 47 H 0.142 0.858 48 H 0.163 0.837 49 H 0.078 0.922 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.655 1.417 -5.374 5.799 hybrid contribution -1.666 0.186 -0.816 1.864 sum -3.321 1.603 -6.190 7.205 Atomic orbital electron populations 1.23402 0.91818 1.07142 1.05707 1.87204 1.10202 1.14152 1.98183 1.23435 0.99522 0.92373 1.05728 1.22319 0.92304 0.98083 0.97917 0.88184 1.23329 0.96836 0.95720 1.00023 1.21789 0.83592 0.96889 0.96963 0.89983 1.45593 1.05599 1.61303 1.22945 1.21013 0.85814 0.77904 0.84924 1.90748 1.87432 1.44884 1.22707 1.20744 0.87877 1.05636 0.99254 1.19545 0.96311 0.94368 0.96904 1.21033 0.96045 1.00233 0.94434 1.21086 0.97740 0.95447 1.01170 1.17814 0.89790 0.95221 0.93932 1.41610 1.08807 1.51089 1.05790 1.22316 1.01512 1.09937 0.82112 1.21224 0.93148 1.07442 1.00126 1.21022 1.01137 1.09384 0.90695 1.20413 0.85226 1.08695 0.95481 1.24718 1.09462 0.97057 0.85584 1.86637 1.64541 1.63533 1.21245 0.93617 0.72966 0.81353 0.82248 1.20892 0.97408 0.98042 0.95443 1.21063 0.94523 0.96763 0.98970 1.23480 0.98605 0.98987 0.97194 0.89517 0.87804 0.89817 0.89438 0.88723 0.87567 0.88975 0.74562 0.84644 0.85270 0.84268 0.85902 0.81262 0.82280 0.80827 0.88808 0.75626 1.24027 1.20136 0.85785 0.83684 0.92239 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.35 10.76 113.37 1.22 1.57 16 2 S -0.32 -0.45 22.37 -56.49 -1.26 -1.71 16 3 C -0.06 0.25 5.78 71.98 0.42 0.66 16 4 C -0.09 0.43 3.53 -10.27 -0.04 0.39 16 5 H 0.10 -0.48 8.13 -2.39 -0.02 -0.50 16 6 C -0.12 0.83 7.39 31.12 0.23 1.06 16 7 C 0.11 -0.20 4.32 45.52 0.20 0.00 16 8 H 0.08 0.28 7.46 -2.39 -0.02 0.26 16 9 N -0.70 2.55 5.26 -440.05 -2.32 0.23 16 10 C 0.52 0.89 7.82 87.66 0.69 1.58 16 11 O -0.58 -7.16 15.63 -3.04 -0.05 -7.21 16 12 C -0.10 0.41 5.83 29.10 0.17 0.58 16 13 C -0.07 -0.19 4.37 -19.85 -0.09 -0.28 16 14 C -0.10 -0.51 9.69 22.25 0.22 -0.29 16 15 C -0.14 -1.14 9.66 22.38 0.22 -0.93 16 16 C 0.12 1.17 4.89 38.08 0.19 1.35 16 17 N -0.40 -4.00 2.87 -333.42 -0.96 -4.96 16 18 C -0.03 -0.27 11.12 83.18 0.93 0.66 16 19 C -0.20 -1.23 10.86 22.15 0.24 -0.99 16 20 C -0.20 -1.03 9.42 22.15 0.21 -0.82 16 21 C 0.01 0.08 6.06 41.04 0.25 0.33 16 22 C -0.06 -0.11 2.28 71.24 0.16 0.05 16 23 O -0.55 -1.87 9.84 -148.98 -1.47 -3.34 16 24 Si 0.79 -0.29 31.13 68.60 2.14 1.85 16 25 C -0.10 -0.65 7.66 22.38 0.17 -0.48 16 26 C -0.09 -0.32 9.69 22.25 0.22 -0.11 16 27 C -0.14 0.20 7.43 31.12 0.23 0.43 16 28 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 29 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 30 H 0.08 -0.37 8.14 -2.39 -0.02 -0.38 16 31 H 0.09 -0.40 7.85 -2.39 -0.02 -0.42 16 32 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H 0.11 -0.86 8.10 -2.39 -0.02 -0.88 16 34 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 35 H 0.42 -4.12 8.70 -92.71 -0.81 -4.92 16 36 H 0.14 -1.38 8.08 -2.39 -0.02 -1.39 16 37 H 0.13 -1.14 8.08 -2.38 -0.02 -1.16 16 38 H 0.14 0.19 8.06 -2.91 -0.02 0.17 16 39 H 0.12 0.94 8.06 -2.91 -0.02 0.92 16 40 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 41 H 0.16 0.30 8.06 -2.91 -0.02 0.27 16 42 H 0.17 -0.26 6.88 -2.91 -0.02 -0.28 16 43 H 0.09 -0.21 7.96 -2.38 -0.02 -0.23 16 44 H 0.39 -1.92 8.74 -74.06 -0.65 -2.57 16 45 H -0.31 -2.94 7.11 99.48 0.71 -2.23 16 46 H -0.28 -0.52 7.11 99.48 0.71 0.19 16 47 H 0.12 0.65 7.67 -2.91 -0.02 0.63 16 48 H 0.15 -0.21 8.06 -2.91 -0.02 -0.23 16 49 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 50 H 0.09 -0.10 7.90 -2.39 -0.02 -0.12 16 Total: 0.00 -25.96 424.61 1.43 -24.52 By element: Atomic # 1 Polarization: -13.69 SS G_CDS: -0.47 Total: -14.16 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 5.82 Total: 4.77 kcal Atomic # 7 Polarization: -1.45 SS G_CDS: -3.27 Total: -4.72 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -1.51 Total: -10.55 kcal Atomic # 14 Polarization: -0.29 SS G_CDS: 2.14 Total: 1.85 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -1.26 Total: -1.71 kcal Total: -25.96 1.43 -24.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_13287746.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.986 kcal (2) G-P(sol) polarization free energy of solvation -25.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds