Wall clock time and date at job start Sun Mar 7 2021 06:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81402 * 102.99641 * 2 1 4 4 C 1.53004 * 109.46663 * 180.02562 * 3 2 1 5 5 H 1.09000 * 112.90418 * 316.24641 * 4 3 2 6 6 C 1.53781 * 113.61590 * 87.50057 * 4 3 2 7 7 C 1.53785 * 87.07673 * 139.98098 * 6 4 3 8 8 H 1.08998 * 113.68648 * 220.00400 * 7 6 4 9 9 N 1.46505 * 113.61400 * 89.12002 * 7 6 4 10 10 C 1.34769 * 119.99920 * 107.50232 * 9 7 6 11 11 O 1.21280 * 120.00761 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99849 * 179.97438 * 10 9 7 13 13 C 1.50698 * 109.47178 * 179.97438 * 12 10 9 14 14 C 1.34845 * 125.88977 * 275.02367 * 13 12 10 15 15 C 1.40899 * 107.41955 * 179.97438 * 14 13 12 16 16 C 1.34849 * 107.40982 * 359.73389 * 15 14 13 17 17 C 1.50708 * 125.88737 * 180.25597 * 16 15 14 18 18 O 1.42902 * 109.47043 * 120.20092 * 17 16 15 19 19 Si 1.86292 * 109.47087 * 0.20007 * 17 16 15 20 20 N 1.36341 * 108.22519 * 0.42861 * 16 15 14 21 21 C 1.53777 * 87.08412 * 334.56531 * 7 6 4 22 22 H 1.08998 * 109.47417 * 60.00157 * 1 2 3 23 23 H 1.08997 * 109.47331 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47480 * 299.99988 * 1 2 3 25 25 H 1.08998 * 109.47437 * 59.99934 * 3 2 1 26 26 H 1.09002 * 109.46799 * 299.99498 * 3 2 1 27 27 H 1.08994 * 113.61681 * 25.43301 * 6 4 3 28 28 H 1.08998 * 113.60946 * 254.52507 * 6 4 3 29 29 H 0.96999 * 119.99772 * 287.49279 * 9 7 6 30 30 H 1.08999 * 109.46816 * 59.99449 * 12 10 9 31 31 H 1.09001 * 109.46873 * 299.99830 * 12 10 9 32 32 H 1.07997 * 126.29434 * 359.97438 * 14 13 12 33 33 H 1.07996 * 126.29224 * 179.97438 * 15 14 13 34 34 H 1.08997 * 109.46831 * 240.19961 * 17 16 15 35 35 H 0.96703 * 114.00238 * 300.00395 * 18 17 16 36 36 H 1.48509 * 109.99928 * 179.97438 * 19 17 16 37 37 H 1.48500 * 110.00356 * 301.32080 * 19 17 16 38 38 H 0.97001 * 125.64231 * 179.83591 * 20 16 15 39 39 H 1.08997 * 113.61340 * 139.98182 * 21 7 6 40 40 H 1.08997 * 113.61760 * 270.88877 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 1 4.2458 1.2671 0.6934 6 6 4.3607 1.9485 -1.4086 7 6 5.2867 3.0702 -0.9094 8 1 5.4515 3.8604 -1.6419 9 7 6.5311 2.5811 -0.3106 10 6 7.6976 2.7228 -0.9705 11 8 7.7173 3.2547 -2.0602 12 6 8.9778 2.2201 -0.3542 13 6 10.1277 2.4980 -1.2877 14 6 10.5190 1.7163 -2.3144 15 6 11.6250 2.3421 -2.9233 16 6 11.8635 3.4852 -2.2489 17 6 12.9530 4.4805 -2.5548 18 8 12.3688 5.7516 -2.8466 19 14 13.9334 3.8951 -4.0267 20 7 10.9514 3.5835 -1.2402 21 6 4.1962 3.4041 0.1221 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8030 2.2372 0.8899 26 1 1.8031 2.2371 -0.8901 27 1 3.6686 2.2679 -2.1876 28 1 4.8868 1.0275 -1.6599 29 1 6.5154 2.1554 0.5609 30 1 8.9011 1.1465 -0.1822 31 1 9.1485 2.7288 0.5946 32 1 10.0678 0.7823 -2.6149 33 1 12.1774 1.9756 -3.7758 34 1 13.6129 4.5733 -1.6923 35 1 11.7683 5.7438 -3.6046 36 1 15.0108 4.8684 -4.3391 37 1 14.5199 2.5596 -3.7478 38 1 10.8951 4.3080 -0.5977 39 1 4.5894 3.6583 1.1064 40 1 3.4590 4.1215 -0.2384 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535148_14644196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:36:54 Heat of formation + Delta-G solvation = -1.320889 kcal Electronic energy + Delta-G solvation = -21157.110351 eV Core-core repulsion = 17873.049359 eV Total energy + Delta-G solvation = -3284.060992 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.119 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.27462 -41.19940 -39.36507 -37.62337 -34.63971 -33.07186 -31.83123 -30.76161 -29.82499 -29.13084 -26.83552 -25.31896 -23.89548 -22.19935 -21.26457 -20.95485 -20.33362 -18.86883 -18.25776 -17.37717 -17.20584 -16.66982 -16.42183 -16.22562 -15.96063 -15.64894 -15.14708 -15.06224 -14.95538 -14.57214 -14.42478 -14.18410 -14.04129 -13.98489 -13.81879 -13.73831 -13.48045 -13.41474 -12.95904 -12.70463 -12.19483 -11.97610 -11.86713 -11.60358 -11.31896 -10.94946 -10.87816 -10.57937 -10.08099 -9.68778 -8.87027 -8.67622 -4.92091 0.65585 1.16793 1.33361 1.58557 1.62598 1.72581 1.93818 1.98394 2.29149 2.52518 3.32647 3.42980 3.49690 3.61032 3.63659 3.71750 3.86730 3.93912 4.03044 4.13403 4.14038 4.19115 4.27800 4.36817 4.41480 4.45511 4.59532 4.61760 4.62886 4.72340 4.76571 4.84946 4.93873 4.97816 5.08014 5.34757 5.38455 5.53594 6.08246 6.22692 6.42479 6.57462 6.68999 7.22182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.264 6.264 3 C -0.075 4.075 4 C -0.095 4.095 5 H 0.099 0.901 6 C -0.142 4.142 7 C 0.120 3.880 8 H 0.105 0.895 9 N -0.716 5.716 10 C 0.514 3.486 11 O -0.520 6.520 12 C -0.072 4.072 13 C 0.035 3.965 14 C -0.172 4.172 15 C -0.188 4.188 16 C -0.010 4.010 17 C -0.049 4.049 18 O -0.547 6.547 19 Si 0.719 3.281 20 N -0.535 5.535 21 C -0.136 4.136 22 H 0.077 0.923 23 H 0.102 0.898 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.401 0.599 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.109 0.891 35 H 0.383 0.617 36 H -0.256 1.256 37 H -0.255 1.255 38 H 0.412 0.588 39 H 0.077 0.923 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.524 -0.362 2.521 4.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.038 6.038 3 C -0.224 4.224 4 C -0.115 4.115 5 H 0.117 0.883 6 C -0.181 4.181 7 C 0.015 3.985 8 H 0.123 0.877 9 N -0.368 5.368 10 C 0.300 3.700 11 O -0.394 6.394 12 C -0.113 4.113 13 C -0.078 4.078 14 C -0.197 4.197 15 C -0.213 4.213 16 C -0.124 4.124 17 C -0.160 4.160 18 O -0.353 6.353 19 Si 0.620 3.380 20 N -0.130 5.130 21 C -0.176 4.176 22 H 0.096 0.904 23 H 0.120 0.880 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.236 0.764 30 H 0.136 0.864 31 H 0.118 0.882 32 H 0.154 0.846 33 H 0.159 0.841 34 H 0.127 0.873 35 H 0.231 0.769 36 H -0.181 1.181 37 H -0.179 1.179 38 H 0.249 0.751 39 H 0.096 0.904 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.700 -0.798 2.028 2.764 hybrid contribution -1.307 1.044 1.538 2.272 sum -3.007 0.246 3.565 4.670 Atomic orbital electron populations 1.23395 0.94022 1.06742 1.04947 1.87024 1.07544 1.11226 1.98048 1.23432 0.99360 0.94568 1.05009 1.22382 0.92571 0.97460 0.99040 0.88325 1.23495 0.98512 0.99833 0.96240 1.21791 0.82926 0.97430 0.96373 0.87706 1.45677 1.06329 1.62221 1.22612 1.20601 0.84724 0.78984 0.85694 1.90766 1.86553 1.41935 1.20131 1.20131 0.89060 1.04295 0.97778 1.19462 0.96074 0.90693 1.01618 1.20593 0.99698 1.01679 0.97713 1.20652 1.01403 0.96302 1.02942 1.20838 0.97421 0.99834 0.94274 1.24835 0.96875 0.84833 1.09447 1.86462 1.65460 1.28756 1.54596 0.93937 0.80714 0.79267 0.84115 1.41783 1.25412 1.19545 1.26249 1.23399 0.97909 0.96263 1.00022 0.90428 0.87964 0.90478 0.89884 0.89829 0.88877 0.90546 0.76436 0.86447 0.88241 0.84574 0.84126 0.87336 0.76946 1.18074 1.17900 0.75120 0.90432 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.17 10.76 101.05 1.09 1.26 16 2 S -0.26 -0.14 22.37 -107.50 -2.40 -2.55 16 3 C -0.08 0.13 5.78 37.16 0.21 0.34 16 4 C -0.10 0.21 3.53 -89.80 -0.32 -0.10 16 5 H 0.10 -0.20 8.13 -51.93 -0.42 -0.62 16 6 C -0.14 0.16 7.43 -25.92 -0.19 -0.03 16 7 C 0.12 -0.14 4.32 -67.12 -0.29 -0.43 16 8 H 0.10 0.09 7.46 -51.93 -0.39 -0.30 16 9 N -0.72 1.25 5.26 -53.01 -0.28 0.97 16 10 C 0.51 0.38 7.82 -10.99 -0.09 0.30 16 11 O -0.52 -2.77 15.63 5.56 0.09 -2.68 16 12 C -0.07 0.12 6.24 -29.03 -0.18 -0.07 16 13 C 0.04 0.05 5.66 -81.79 -0.46 -0.41 16 14 C -0.17 -0.43 10.76 -39.78 -0.43 -0.86 16 15 C -0.19 -0.41 9.37 -39.78 -0.37 -0.78 16 16 C -0.01 -0.02 6.50 -81.79 -0.53 -0.55 16 17 C -0.05 -0.04 3.08 36.01 0.11 0.07 16 18 O -0.55 -0.70 12.88 -35.23 -0.45 -1.15 16 19 Si 0.72 -0.20 30.58 -169.99 -5.20 -5.40 16 20 N -0.54 -0.74 6.08 -5.44 -0.03 -0.78 16 21 C -0.14 0.40 7.39 -25.92 -0.19 0.21 16 22 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 23 H 0.10 -0.18 8.14 -51.93 -0.42 -0.61 16 24 H 0.08 -0.16 8.14 -51.92 -0.42 -0.58 16 25 H 0.08 -0.18 8.14 -51.93 -0.42 -0.61 16 26 H 0.08 -0.17 7.84 -51.92 -0.41 -0.57 16 27 H 0.09 -0.11 7.89 -51.93 -0.41 -0.52 16 28 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 29 H 0.40 -1.74 8.70 -40.82 -0.36 -2.10 16 30 H 0.12 -0.42 8.14 -51.93 -0.42 -0.84 16 31 H 0.10 -0.39 8.14 -51.93 -0.42 -0.81 16 32 H 0.14 0.19 8.06 -52.49 -0.42 -0.23 16 33 H 0.14 0.07 6.22 -52.49 -0.33 -0.26 16 34 H 0.11 0.08 7.96 -51.93 -0.41 -0.33 16 35 H 0.38 -0.69 8.70 45.56 0.40 -0.29 16 36 H -0.26 -0.65 7.11 56.52 0.40 -0.24 16 37 H -0.25 -0.51 7.11 56.52 0.40 -0.11 16 38 H 0.41 -0.09 8.96 -40.82 -0.37 -0.46 16 39 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 40 H 0.10 -0.33 8.10 -51.93 -0.42 -0.75 16 LS Contribution 348.84 15.07 5.26 5.26 Total: 0.00 -8.52 348.84 -10.78 -19.30 By element: Atomic # 1 Polarization: -5.80 SS G_CDS: -6.11 Total: -11.92 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -1.64 Total: -1.05 kcal Atomic # 7 Polarization: 0.51 SS G_CDS: -0.31 Total: 0.20 kcal Atomic # 8 Polarization: -3.47 SS G_CDS: -0.37 Total: -3.84 kcal Atomic # 14 Polarization: -0.20 SS G_CDS: -5.20 Total: -5.40 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -2.40 Total: -2.55 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -8.52 -10.78 -19.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_14644196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.978 kcal (2) G-P(sol) polarization free energy of solvation -8.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds