Wall clock time and date at job start Sun Mar 7 2021 06:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81398 * 103.00201 * 2 1 4 4 C 1.52994 * 109.47331 * 179.97438 * 3 2 1 5 5 H 1.09006 * 112.84699 * 316.19479 * 4 3 2 6 6 C 1.53782 * 113.61722 * 87.50274 * 4 3 2 7 7 C 1.53780 * 87.08121 * 139.98154 * 6 4 3 8 8 H 1.09003 * 113.69207 * 220.00934 * 7 6 4 9 9 N 1.46499 * 113.61547 * 89.11616 * 7 6 4 10 10 C 1.34776 * 119.99941 * 107.49771 * 9 7 6 11 11 O 1.21283 * 120.00254 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00405 * 180.02562 * 10 9 7 13 13 O 1.42894 * 109.47583 * 180.02562 * 12 10 9 14 14 C 1.35900 * 117.00370 * 179.97438 * 13 12 10 15 15 C 1.38708 * 120.05751 * 180.02562 * 14 13 12 16 16 C 1.50696 * 120.02796 * 359.96075 * 15 14 13 17 17 O 1.42906 * 109.46914 * 284.99476 * 16 15 14 18 18 Si 1.86302 * 109.47216 * 165.00159 * 16 15 14 19 19 C 1.38171 * 119.94045 * 180.02562 * 15 14 13 20 20 C 1.38240 * 120.06065 * 359.97438 * 19 15 14 21 21 C 1.38295 * 120.10794 * 0.02562 * 20 19 15 22 22 C 1.38119 * 120.05704 * 0.02562 * 21 20 19 23 23 C 1.53779 * 113.61455 * 185.00320 * 4 3 2 24 24 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47423 * 299.99822 * 1 2 3 26 26 H 1.09004 * 109.46906 * 60.00107 * 1 2 3 27 27 H 1.09005 * 109.46552 * 59.99894 * 3 2 1 28 28 H 1.08998 * 109.47051 * 300.00013 * 3 2 1 29 29 H 1.08998 * 113.60941 * 25.43470 * 6 4 3 30 30 H 1.08997 * 113.61075 * 254.53281 * 6 4 3 31 31 H 0.97002 * 120.00478 * 287.50595 * 9 7 6 32 32 H 1.09001 * 109.47049 * 59.99786 * 12 10 9 33 33 H 1.08998 * 109.46949 * 300.00530 * 12 10 9 34 34 H 1.08999 * 109.47499 * 44.99882 * 16 15 14 35 35 H 0.96698 * 113.99888 * 300.00284 * 17 16 15 36 36 H 1.48496 * 110.00356 * 179.97438 * 18 16 15 37 37 H 1.48498 * 109.99693 * 301.31582 * 18 16 15 38 38 H 1.08005 * 119.97011 * 180.02562 * 19 15 14 39 39 H 1.07995 * 119.94494 * 180.27435 * 20 19 15 40 40 H 1.07997 * 119.96986 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.02616 * 179.97438 * 22 21 20 42 42 H 1.09002 * 113.61624 * 105.46930 * 23 4 3 43 43 H 1.08999 * 113.61799 * 334.56466 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.2442 1.2673 0.6963 6 6 4.3620 1.9482 -1.4068 7 6 5.2875 3.0700 -0.9071 8 1 5.4530 3.8602 -1.6395 9 7 6.5313 2.5811 -0.3070 10 6 7.6985 2.7225 -0.9660 11 8 7.7192 3.2549 -2.0555 12 6 8.9780 2.2190 -0.3491 13 8 10.0693 2.4835 -1.2328 14 6 11.3040 2.0898 -0.8237 15 6 12.4085 2.3156 -1.6318 16 6 12.2405 2.9972 -2.9653 17 8 11.6648 2.0814 -3.8991 18 14 13.9037 3.5577 -3.5902 19 6 13.6626 1.9139 -1.2136 20 6 13.8173 1.2879 0.0092 21 6 12.7176 1.0616 0.8167 22 6 11.4617 1.4603 0.4028 23 6 4.1961 3.4041 0.1236 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8031 2.2370 0.8900 28 1 1.8032 2.2371 -0.8900 29 1 3.6704 2.2675 -2.1864 30 1 4.8882 1.0272 -1.6575 31 1 6.5149 2.1554 0.5644 32 1 8.9007 1.1453 -0.1777 33 1 9.1482 2.7271 0.6001 34 1 11.5851 3.8607 -2.8520 35 1 12.1956 1.2872 -4.0494 36 1 13.7518 4.2309 -4.9050 37 1 14.5269 4.4858 -2.6128 38 1 14.5230 2.0899 -1.8423 39 1 14.7990 0.9787 0.3361 40 1 12.8410 0.5720 1.7714 41 1 10.6032 1.2830 1.0337 42 1 4.5886 3.6584 1.1082 43 1 3.4593 4.1214 -0.2377 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535148_2989392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:37:04 Heat of formation + Delta-G solvation = -46.568034 kcal Electronic energy + Delta-G solvation = -24554.607753 eV Core-core repulsion = 20887.102275 eV Total energy + Delta-G solvation = -3667.505477 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.123 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.69147 -41.10162 -39.57638 -38.30680 -37.34697 -34.74582 -32.72725 -31.47280 -30.82651 -29.87428 -29.01212 -26.86150 -26.59536 -24.31773 -23.39660 -22.60505 -21.85467 -20.40625 -19.45255 -18.37057 -17.93339 -17.51929 -17.38027 -16.98223 -16.84932 -16.53649 -16.11973 -15.85722 -15.80771 -15.34131 -15.13824 -15.12180 -14.96503 -14.81036 -14.43101 -14.07326 -14.03543 -13.80537 -13.69456 -13.48382 -13.44119 -13.01574 -12.92218 -12.38369 -12.21686 -12.19266 -11.95438 -11.66331 -11.63224 -11.35144 -10.96084 -10.88333 -10.22865 -10.17202 -9.99946 -9.21617 -8.68535 -4.95600 0.20545 0.39493 0.64564 1.40209 1.42388 1.48598 1.57733 1.73637 2.08895 2.53386 2.67466 3.28913 3.40028 3.44692 3.59021 3.60780 3.67578 3.77056 3.78544 3.87179 3.91950 4.01987 4.11948 4.13445 4.17981 4.25141 4.25912 4.33083 4.39612 4.50531 4.57539 4.60862 4.68272 4.71077 4.72401 4.90198 4.95371 4.95862 5.03028 5.24792 5.30743 5.45741 5.46658 5.67871 6.22654 6.37638 6.79241 7.09987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.265 6.265 3 C -0.076 4.076 4 C -0.096 4.096 5 H 0.099 0.901 6 C -0.142 4.142 7 C 0.121 3.879 8 H 0.107 0.893 9 N -0.711 5.711 10 C 0.518 3.482 11 O -0.505 6.505 12 C 0.040 3.960 13 O -0.278 6.278 14 C 0.151 3.849 15 C -0.149 4.149 16 C -0.057 4.057 17 O -0.532 6.532 18 Si 0.682 3.318 19 C -0.075 4.075 20 C -0.151 4.151 21 C -0.073 4.073 22 C -0.212 4.212 23 C -0.135 4.135 24 H 0.102 0.898 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.402 0.598 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.373 0.627 36 H -0.254 1.254 37 H -0.257 1.257 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.078 0.922 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 -2.464 5.482 6.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.039 6.039 3 C -0.224 4.224 4 C -0.115 4.115 5 H 0.117 0.883 6 C -0.181 4.181 7 C 0.016 3.984 8 H 0.125 0.875 9 N -0.365 5.365 10 C 0.303 3.697 11 O -0.378 6.378 12 C -0.039 4.039 13 O -0.190 6.190 14 C 0.105 3.895 15 C -0.150 4.150 16 C -0.168 4.168 17 O -0.336 6.336 18 Si 0.584 3.416 19 C -0.092 4.092 20 C -0.170 4.170 21 C -0.091 4.091 22 C -0.231 4.231 23 C -0.175 4.175 24 H 0.120 0.880 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.237 0.763 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.131 0.869 35 H 0.219 0.781 36 H -0.179 1.179 37 H -0.182 1.182 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.097 0.903 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.335 -1.695 4.211 4.552 hybrid contribution -1.638 0.723 1.228 2.172 sum -1.304 -0.973 5.439 5.677 Atomic orbital electron populations 1.23396 0.93981 1.06752 1.04961 1.87023 1.07592 1.11206 1.98050 1.23428 0.99291 0.94599 1.05062 1.22391 0.92663 0.97459 0.98983 0.88301 1.23508 0.98473 0.99778 0.96349 1.21824 0.82466 0.97587 0.96519 0.87452 1.45464 1.05995 1.62400 1.22644 1.20020 0.84345 0.79552 0.85804 1.90806 1.86249 1.41027 1.19744 1.22457 0.85493 1.02252 0.93739 1.86235 1.12650 1.76501 1.43579 1.18804 0.84374 0.93869 0.92457 1.19736 0.91456 1.05618 0.98220 1.24936 1.09386 0.95430 0.87035 1.86607 1.50911 1.34402 1.61670 0.95233 0.78826 0.86985 0.80566 1.20863 0.95085 0.96790 0.96493 1.21078 0.99343 1.01739 0.94798 1.21024 0.91770 0.96978 0.99324 1.21299 0.99335 1.05647 0.96811 1.23403 0.97748 0.96311 0.99999 0.87956 0.90458 0.90421 0.89836 0.89785 0.88683 0.90495 0.76312 0.88714 0.88882 0.86912 0.78062 1.17883 1.18200 0.84682 0.85175 0.85336 0.85286 0.90300 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.17 10.76 101.05 1.09 1.25 16 2 S -0.26 -0.16 22.37 -107.50 -2.40 -2.57 16 3 C -0.08 0.12 5.78 37.15 0.21 0.34 16 4 C -0.10 0.21 3.53 -89.81 -0.32 -0.11 16 5 H 0.10 -0.21 8.13 -51.93 -0.42 -0.63 16 6 C -0.14 0.12 7.43 -25.92 -0.19 -0.07 16 7 C 0.12 -0.09 4.32 -67.12 -0.29 -0.39 16 8 H 0.11 0.13 7.46 -51.93 -0.39 -0.26 16 9 N -0.71 0.89 5.26 -53.02 -0.28 0.61 16 10 C 0.52 1.07 7.91 -10.99 -0.09 0.99 16 11 O -0.51 -3.69 16.10 -14.36 -0.23 -3.92 16 12 C 0.04 -0.01 5.22 36.01 0.19 0.18 16 13 O -0.28 -1.06 9.00 -39.34 -0.35 -1.42 16 14 C 0.15 0.37 6.66 -39.22 -0.26 0.10 16 15 C -0.15 -0.29 5.27 -104.47 -0.55 -0.84 16 16 C -0.06 -0.15 2.38 36.00 0.09 -0.06 16 17 O -0.53 -1.80 12.88 -35.23 -0.45 -2.25 16 18 Si 0.68 0.35 29.92 -169.99 -5.09 -4.74 16 19 C -0.07 0.01 8.66 -39.61 -0.34 -0.33 16 20 C -0.15 0.11 10.04 -39.56 -0.40 -0.28 16 21 C -0.07 0.05 10.04 -39.60 -0.40 -0.35 16 22 C -0.21 -0.02 9.04 -39.43 -0.36 -0.38 16 23 C -0.13 0.39 7.39 -25.92 -0.19 0.20 16 24 H 0.10 -0.18 8.14 -51.92 -0.42 -0.60 16 25 H 0.08 -0.16 8.14 -51.92 -0.42 -0.58 16 26 H 0.08 -0.15 8.14 -51.92 -0.42 -0.57 16 27 H 0.08 -0.19 8.14 -51.92 -0.42 -0.61 16 28 H 0.08 -0.16 7.84 -51.92 -0.41 -0.57 16 29 H 0.09 -0.09 7.90 -51.93 -0.41 -0.50 16 30 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 31 H 0.40 -1.73 8.70 -40.82 -0.36 -2.08 16 32 H 0.10 -0.24 7.66 -51.93 -0.40 -0.64 16 33 H 0.09 -0.27 7.66 -51.93 -0.40 -0.66 16 34 H 0.11 0.52 7.83 -51.93 -0.41 0.12 16 35 H 0.37 -0.45 8.70 45.56 0.40 -0.05 16 36 H -0.25 -0.99 7.11 56.52 0.40 -0.59 16 37 H -0.26 -0.69 7.11 56.52 0.40 -0.29 16 38 H 0.14 -0.36 5.13 -52.48 -0.27 -0.63 16 39 H 0.13 -0.37 8.06 -52.49 -0.42 -0.79 16 40 H 0.13 -0.36 8.06 -52.49 -0.42 -0.78 16 41 H 0.13 -0.31 6.30 -52.49 -0.33 -0.64 16 42 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 43 H 0.10 -0.34 8.10 -51.93 -0.42 -0.76 16 LS Contribution 370.55 15.07 5.58 5.58 Total: 0.00 -10.22 370.55 -11.42 -21.65 By element: Atomic # 1 Polarization: -6.81 SS G_CDS: -6.39 Total: -13.20 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.81 Total: 0.26 kcal Atomic # 7 Polarization: 0.89 SS G_CDS: -0.28 Total: 0.61 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -1.04 Total: -7.59 kcal Atomic # 14 Polarization: 0.35 SS G_CDS: -5.09 Total: -4.74 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.40 Total: -2.57 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -10.22 -11.42 -21.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_2989392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.923 kcal (2) G-P(sol) polarization free energy of solvation -10.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds