Wall clock time and date at job start Sun Mar 7 2021 06:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81398 * 103.00201 * 2 1 4 4 C 1.52994 * 109.47331 * 179.97438 * 3 2 1 5 5 H 1.09006 * 112.84699 * 316.19479 * 4 3 2 6 6 C 1.53782 * 113.61722 * 87.50274 * 4 3 2 7 7 C 1.53780 * 87.08121 * 139.98154 * 6 4 3 8 8 H 1.09003 * 113.69207 * 220.00934 * 7 6 4 9 9 N 1.46499 * 113.61547 * 89.11616 * 7 6 4 10 10 C 1.34776 * 119.99941 * 107.49771 * 9 7 6 11 11 O 1.21283 * 120.00254 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00405 * 180.02562 * 10 9 7 13 13 O 1.42894 * 109.47583 * 180.02562 * 12 10 9 14 14 C 1.35900 * 117.00370 * 179.97438 * 13 12 10 15 15 C 1.38708 * 120.05751 * 180.02562 * 14 13 12 16 16 C 1.50696 * 120.02796 * 359.96075 * 15 14 13 17 17 O 1.42906 * 109.46914 * 284.99476 * 16 15 14 18 18 Si 1.86302 * 109.47216 * 165.00159 * 16 15 14 19 19 C 1.38171 * 119.94045 * 180.02562 * 15 14 13 20 20 C 1.38240 * 120.06065 * 359.97438 * 19 15 14 21 21 C 1.38295 * 120.10794 * 0.02562 * 20 19 15 22 22 C 1.38119 * 120.05704 * 0.02562 * 21 20 19 23 23 C 1.53779 * 113.61455 * 185.00320 * 4 3 2 24 24 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47423 * 299.99822 * 1 2 3 26 26 H 1.09004 * 109.46906 * 60.00107 * 1 2 3 27 27 H 1.09005 * 109.46552 * 59.99894 * 3 2 1 28 28 H 1.08998 * 109.47051 * 300.00013 * 3 2 1 29 29 H 1.08998 * 113.60941 * 25.43470 * 6 4 3 30 30 H 1.08997 * 113.61075 * 254.53281 * 6 4 3 31 31 H 0.97002 * 120.00478 * 287.50595 * 9 7 6 32 32 H 1.09001 * 109.47049 * 59.99786 * 12 10 9 33 33 H 1.08998 * 109.46949 * 300.00530 * 12 10 9 34 34 H 1.08999 * 109.47499 * 44.99882 * 16 15 14 35 35 H 0.96698 * 113.99888 * 300.00284 * 17 16 15 36 36 H 1.48496 * 110.00356 * 179.97438 * 18 16 15 37 37 H 1.48498 * 109.99693 * 301.31582 * 18 16 15 38 38 H 1.08005 * 119.97011 * 180.02562 * 19 15 14 39 39 H 1.07995 * 119.94494 * 180.27435 * 20 19 15 40 40 H 1.07997 * 119.96986 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.02616 * 179.97438 * 22 21 20 42 42 H 1.09002 * 113.61624 * 105.46930 * 23 4 3 43 43 H 1.08999 * 113.61799 * 334.56466 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.2442 1.2673 0.6963 6 6 4.3620 1.9482 -1.4068 7 6 5.2875 3.0700 -0.9071 8 1 5.4530 3.8602 -1.6395 9 7 6.5313 2.5811 -0.3070 10 6 7.6985 2.7225 -0.9660 11 8 7.7192 3.2549 -2.0555 12 6 8.9780 2.2190 -0.3491 13 8 10.0693 2.4835 -1.2328 14 6 11.3040 2.0898 -0.8237 15 6 12.4085 2.3156 -1.6318 16 6 12.2405 2.9972 -2.9653 17 8 11.6648 2.0814 -3.8991 18 14 13.9037 3.5577 -3.5902 19 6 13.6626 1.9139 -1.2136 20 6 13.8173 1.2879 0.0092 21 6 12.7176 1.0616 0.8167 22 6 11.4617 1.4603 0.4028 23 6 4.1961 3.4041 0.1236 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8031 2.2370 0.8900 28 1 1.8032 2.2371 -0.8900 29 1 3.6704 2.2675 -2.1864 30 1 4.8882 1.0272 -1.6575 31 1 6.5149 2.1554 0.5644 32 1 8.9007 1.1453 -0.1777 33 1 9.1482 2.7271 0.6001 34 1 11.5851 3.8607 -2.8520 35 1 12.1956 1.2872 -4.0494 36 1 13.7518 4.2309 -4.9050 37 1 14.5269 4.4858 -2.6128 38 1 14.5230 2.0899 -1.8423 39 1 14.7990 0.9787 0.3361 40 1 12.8410 0.5720 1.7714 41 1 10.6032 1.2830 1.0337 42 1 4.5886 3.6584 1.1082 43 1 3.4593 4.1214 -0.2377 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_2989392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:37:03 Heat of formation + Delta-G solvation = -46.583063 kcal Electronic energy + Delta-G solvation = -24554.608404 eV Core-core repulsion = 20887.102275 eV Total energy + Delta-G solvation = -3667.506129 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.123 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.74068 -41.10118 -39.63058 -38.40728 -37.48091 -34.84551 -32.73294 -31.43699 -30.76724 -29.77723 -28.98003 -26.75664 -26.67895 -24.27820 -23.35692 -22.62507 -21.90069 -20.36540 -19.48297 -18.41432 -18.05437 -17.55752 -17.37362 -17.03692 -16.84216 -16.56966 -16.14480 -15.85063 -15.80420 -15.35684 -15.22316 -15.07473 -14.99346 -14.84946 -14.32483 -14.21471 -13.93988 -13.82094 -13.66199 -13.45454 -13.36557 -13.01796 -12.87942 -12.36774 -12.20444 -12.12785 -12.08354 -11.76975 -11.55424 -11.28332 -11.08773 -10.90829 -10.38356 -10.22309 -9.95611 -9.21729 -8.71223 -5.05592 0.24807 0.42154 0.72436 1.28440 1.34911 1.43230 1.62057 1.66185 1.95162 2.55150 2.71831 3.38945 3.45896 3.51541 3.55288 3.69827 3.75107 3.77255 3.87913 3.96433 4.02115 4.13219 4.25589 4.28699 4.31490 4.31856 4.37000 4.39569 4.49347 4.53084 4.65071 4.70058 4.73333 4.79129 4.85411 4.97749 4.98399 5.01364 5.11708 5.29144 5.38931 5.49636 5.53904 5.77335 6.24800 6.41351 6.81139 7.05222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.323 6.323 3 C -0.063 4.063 4 C -0.086 4.086 5 H 0.102 0.898 6 C -0.144 4.144 7 C 0.112 3.888 8 H 0.082 0.918 9 N -0.692 5.692 10 C 0.514 3.486 11 O -0.570 6.570 12 C 0.038 3.962 13 O -0.315 6.315 14 C 0.124 3.876 15 C -0.171 4.171 16 C -0.075 4.075 17 O -0.557 6.557 18 Si 0.796 3.204 19 C -0.078 4.078 20 C -0.153 4.153 21 C -0.076 4.076 22 C -0.214 4.214 23 C -0.117 4.117 24 H 0.103 0.897 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.420 0.580 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.078 0.922 35 H 0.391 0.609 36 H -0.304 1.304 37 H -0.281 1.281 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.094 0.906 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.208 -3.246 7.832 8.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.097 6.097 3 C -0.211 4.211 4 C -0.105 4.105 5 H 0.120 0.880 6 C -0.183 4.183 7 C 0.006 3.994 8 H 0.100 0.900 9 N -0.346 5.346 10 C 0.300 3.700 11 O -0.448 6.448 12 C -0.040 4.040 13 O -0.228 6.228 14 C 0.079 3.921 15 C -0.172 4.172 16 C -0.183 4.183 17 O -0.365 6.365 18 Si 0.701 3.299 19 C -0.096 4.096 20 C -0.171 4.171 21 C -0.094 4.094 22 C -0.232 4.232 23 C -0.157 4.157 24 H 0.122 0.878 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.114 0.886 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.258 0.742 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.096 0.904 35 H 0.240 0.760 36 H -0.232 1.232 37 H -0.207 1.207 38 H 0.175 0.825 39 H 0.173 0.827 40 H 0.171 0.829 41 H 0.170 0.830 42 H 0.113 0.887 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.818 -2.535 6.633 7.148 hybrid contribution -1.875 0.956 0.503 2.164 sum -1.057 -1.579 7.136 7.384 Atomic orbital electron populations 1.23404 0.91790 1.07159 1.05718 1.87203 1.10229 1.14089 1.98185 1.23431 0.99392 0.92445 1.05827 1.22326 0.92457 0.98012 0.97726 0.87975 1.23498 0.98504 0.98821 0.97457 1.21869 0.83059 0.97173 0.97304 0.89972 1.45339 1.05088 1.61246 1.22927 1.20567 0.85768 0.78536 0.85083 1.90775 1.87221 1.44217 1.22606 1.22677 0.83434 1.04000 0.93881 1.86185 1.13881 1.77320 1.45426 1.19129 0.84001 0.95223 0.93786 1.19856 0.92622 1.06776 0.97991 1.25212 1.10217 0.94681 0.88185 1.86545 1.52368 1.35534 1.62054 0.94019 0.75638 0.84378 0.75857 1.21119 0.94756 0.96449 0.97246 1.21460 1.00600 1.00781 0.94262 1.21414 0.91361 0.96383 1.00243 1.21585 1.00751 1.04843 0.96067 1.23336 0.96526 0.95897 0.99892 0.87785 0.89485 0.89831 0.88585 0.89397 0.88807 0.92182 0.74181 0.86128 0.85895 0.90400 0.76017 1.23221 1.20746 0.82499 0.82708 0.82861 0.83005 0.88741 0.87281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.34 10.76 113.37 1.22 1.56 16 2 S -0.32 -0.47 22.37 -56.49 -1.26 -1.74 16 3 C -0.06 0.25 5.78 71.98 0.42 0.66 16 4 C -0.09 0.41 3.53 -10.27 -0.04 0.37 16 5 H 0.10 -0.51 8.13 -2.38 -0.02 -0.53 16 6 C -0.14 0.08 7.43 31.12 0.23 0.31 16 7 C 0.11 -0.05 4.32 45.52 0.20 0.15 16 8 H 0.08 0.42 7.46 -2.39 -0.02 0.40 16 9 N -0.69 1.27 5.26 -440.03 -2.32 -1.04 16 10 C 0.51 3.06 7.91 87.66 0.69 3.75 16 11 O -0.57 -10.42 16.10 16.00 0.26 -10.16 16 12 C 0.04 0.01 5.22 71.24 0.37 0.38 16 13 O -0.32 -3.09 9.00 -73.39 -0.66 -3.75 16 14 C 0.12 0.72 6.66 22.51 0.15 0.87 16 15 C -0.17 -0.86 5.27 -19.77 -0.10 -0.97 16 16 C -0.07 -0.57 2.38 71.23 0.17 -0.40 16 17 O -0.56 -5.19 12.88 -148.98 -1.92 -7.11 16 18 Si 0.80 1.55 29.92 68.60 2.05 3.60 16 19 C -0.08 0.08 8.66 22.25 0.19 0.27 16 20 C -0.15 0.50 10.04 22.28 0.22 0.73 16 21 C -0.08 0.25 10.04 22.25 0.22 0.47 16 22 C -0.21 0.15 9.04 22.37 0.20 0.35 16 23 C -0.12 0.77 7.39 31.12 0.23 1.00 16 24 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 25 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 26 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 27 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 28 H 0.09 -0.39 7.84 -2.39 -0.02 -0.41 16 29 H 0.09 -0.05 7.90 -2.39 -0.02 -0.07 16 30 H 0.06 0.17 8.14 -2.39 -0.02 0.16 16 31 H 0.42 -3.90 8.70 -92.71 -0.81 -4.71 16 32 H 0.12 -0.68 7.66 -2.39 -0.02 -0.70 16 33 H 0.12 -0.79 7.66 -2.39 -0.02 -0.81 16 34 H 0.08 1.06 7.83 -2.39 -0.02 1.05 16 35 H 0.39 -0.29 8.70 -74.06 -0.64 -0.94 16 36 H -0.30 -3.02 7.11 99.48 0.71 -2.31 16 37 H -0.28 -1.58 7.11 99.48 0.71 -0.88 16 38 H 0.16 -1.04 5.13 -2.91 -0.01 -1.05 16 39 H 0.16 -1.32 8.06 -2.91 -0.02 -1.35 16 40 H 0.15 -1.32 8.06 -2.91 -0.02 -1.34 16 41 H 0.15 -1.00 6.30 -2.91 -0.02 -1.02 16 42 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 43 H 0.11 -0.86 8.10 -2.39 -0.02 -0.88 16 Total: 0.00 -28.88 370.55 0.15 -28.74 By element: Atomic # 1 Polarization: -17.66 SS G_CDS: -0.38 Total: -18.04 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 4.38 Total: 9.52 kcal Atomic # 7 Polarization: 1.27 SS G_CDS: -2.32 Total: -1.04 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -2.32 Total: -21.03 kcal Atomic # 14 Polarization: 1.55 SS G_CDS: 2.05 Total: 3.60 kcal Atomic # 16 Polarization: -0.47 SS G_CDS: -1.26 Total: -1.74 kcal Total: -28.88 0.15 -28.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_2989392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.848 kcal (2) G-P(sol) polarization free energy of solvation -28.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds