Wall clock time and date at job start Sun Mar 7 2021 06:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81396 * 103.00067 * 2 1 4 4 C 1.52999 * 109.47136 * 180.02562 * 3 2 1 5 5 H 1.08995 * 112.84798 * 316.19445 * 4 3 2 6 6 C 1.54045 * 113.69588 * 87.46429 * 4 3 2 7 7 C 1.53783 * 86.98565 * 139.98963 * 6 4 3 8 8 H 1.09000 * 113.61774 * 219.98295 * 7 6 4 9 9 N 1.46496 * 113.61576 * 89.16097 * 7 6 4 10 10 C 1.34777 * 120.00271 * 105.86138 * 9 7 6 11 11 O 1.21278 * 119.99854 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00161 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.46912 * 180.02562 * 12 10 9 14 14 O 1.42903 * 109.46726 * 180.02562 * 13 12 10 15 15 C 1.35904 * 116.99628 * 179.97438 * 14 13 12 16 16 C 1.38709 * 120.05185 * 179.97438 * 15 14 13 17 17 C 1.38172 * 119.94249 * 180.02562 * 16 15 14 18 18 C 1.50703 * 119.97348 * 179.97438 * 17 16 15 19 19 O 1.42904 * 109.46574 * 299.99951 * 18 17 16 20 20 Si 1.86295 * 109.47039 * 179.97438 * 18 17 16 21 21 C 1.38245 * 120.05514 * 359.97438 * 17 16 15 22 22 C 1.38287 * 120.11362 * 359.97438 * 21 17 16 23 23 C 1.38131 * 120.05483 * 359.76229 * 22 21 17 24 24 C 1.53779 * 87.17276 * 334.56912 * 7 6 4 25 25 H 1.08998 * 109.46896 * 60.00232 * 1 2 3 26 26 H 1.08999 * 109.46978 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46998 * 299.99908 * 1 2 3 28 28 H 1.09005 * 109.47328 * 59.99716 * 3 2 1 29 29 H 1.08998 * 109.46845 * 300.00176 * 3 2 1 30 30 H 1.08995 * 113.61593 * 25.48771 * 6 4 3 31 31 H 1.08994 * 113.69689 * 254.50400 * 6 4 3 32 32 H 0.97005 * 120.00266 * 285.86721 * 9 7 6 33 33 H 1.09002 * 109.47152 * 60.00245 * 12 10 9 34 34 H 1.09001 * 109.46980 * 300.00345 * 12 10 9 35 35 H 1.09001 * 109.47194 * 299.99742 * 13 12 10 36 36 H 1.08992 * 109.47399 * 59.99914 * 13 12 10 37 37 H 1.07995 * 120.03113 * 0.02738 * 16 15 14 38 38 H 1.09002 * 109.47072 * 60.00063 * 18 17 16 39 39 H 0.96691 * 114.00092 * 299.99763 * 19 18 17 40 40 H 1.48500 * 110.00124 * 58.68007 * 20 18 17 41 41 H 1.48506 * 109.99950 * 179.97438 * 20 18 17 42 42 H 1.08003 * 119.94344 * 180.02562 * 21 17 16 43 43 H 1.07998 * 119.97784 * 180.02562 * 22 21 17 44 44 H 1.07994 * 120.03086 * 180.28017 * 23 22 21 45 45 H 1.09006 * 113.61755 * 140.02045 * 24 7 6 46 46 H 1.08999 * 113.61692 * 270.84403 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 1 4.2449 1.2672 0.6944 6 6 4.3639 1.9478 -1.4101 7 6 5.2882 3.0696 -0.9079 8 1 5.4541 3.8595 -1.6404 9 7 6.5316 2.5806 -0.3071 10 6 7.6946 2.6939 -0.9787 11 8 7.7119 3.2010 -2.0802 12 6 8.9737 2.1904 -0.3609 13 6 10.1371 2.4388 -1.3230 14 8 11.3498 1.9608 -0.7374 15 6 12.4866 2.1057 -1.4679 16 6 13.6996 1.6644 -0.9601 17 6 14.8541 1.8133 -1.7045 18 6 16.1724 1.3345 -1.1532 19 8 16.4565 2.0225 0.0667 20 14 17.5235 1.6769 -2.3893 21 6 14.8008 2.4011 -2.9546 22 6 13.5926 2.8410 -3.4635 23 6 12.4348 2.6895 -2.7256 24 6 4.1963 3.4041 0.1221 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8032 2.2371 0.8900 29 1 1.8032 2.2370 -0.8900 30 1 3.6732 2.2677 -2.1902 31 1 4.8911 1.0275 -1.6615 32 1 6.5179 2.1753 0.5741 33 1 8.8862 1.1218 -0.1642 34 1 9.1575 2.7182 0.5750 35 1 9.9535 1.9113 -2.2590 36 1 10.2244 3.5074 -1.5192 37 1 13.7416 1.2047 0.0163 38 1 16.1185 0.2628 -0.9619 39 1 16.5189 2.9827 -0.0287 40 1 17.5863 3.1311 -2.6833 41 1 18.8289 1.2099 -1.8572 42 1 15.7043 2.5163 -3.5351 43 1 13.5535 3.2996 -4.4405 44 1 11.4908 3.0291 -3.1253 45 1 4.5882 3.6586 1.1069 46 1 3.4605 4.1224 -0.2393 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_4549614.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:37:11 Heat of formation + Delta-G solvation = -55.113186 kcal Electronic energy + Delta-G solvation = -25513.216960 eV Core-core repulsion = 21689.803319 eV Total energy + Delta-G solvation = -3823.413642 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.138 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.54207 -41.16048 -39.67384 -39.06266 -37.39072 -34.74726 -33.27638 -32.48731 -31.02356 -30.40419 -29.61761 -27.06939 -26.72479 -25.66722 -23.73168 -23.64417 -22.23275 -21.53005 -20.28438 -19.41701 -18.29386 -17.81493 -17.51454 -17.34656 -17.11201 -17.06063 -16.78159 -16.30658 -16.08451 -15.99344 -15.54149 -15.44988 -15.04247 -14.93959 -14.71338 -14.45348 -14.26437 -14.13450 -14.11841 -13.87580 -13.56192 -13.33540 -13.22688 -12.98285 -12.89367 -12.77607 -12.41417 -12.10850 -11.99885 -11.83184 -11.58498 -11.52529 -11.24187 -11.10548 -10.89651 -10.68212 -10.13570 -9.94542 -9.28593 -8.70625 -4.90115 0.18676 0.38263 0.73507 1.29698 1.46985 1.62436 1.66338 1.68247 1.96695 2.45508 2.65039 3.40329 3.42314 3.52917 3.55476 3.63177 3.71937 3.78842 3.83576 3.88183 3.95599 4.08606 4.22710 4.26746 4.27141 4.29374 4.32660 4.38357 4.42117 4.52127 4.55118 4.61495 4.65191 4.73216 4.75436 4.76587 4.84200 4.86041 4.97355 5.01055 5.04886 5.17269 5.25077 5.37036 5.42880 5.55919 5.69310 6.31362 6.42292 6.46930 7.11745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.324 6.324 3 C -0.062 4.062 4 C -0.089 4.089 5 H 0.098 0.902 6 C -0.143 4.143 7 C 0.113 3.887 8 H 0.087 0.913 9 N -0.699 5.699 10 C 0.523 3.477 11 O -0.581 6.581 12 C -0.133 4.133 13 C 0.075 3.925 14 O -0.324 6.324 15 C 0.116 3.884 16 C -0.141 4.141 17 C -0.082 4.082 18 C -0.087 4.087 19 O -0.548 6.548 20 Si 0.776 3.224 21 C -0.156 4.156 22 C -0.075 4.075 23 C -0.211 4.211 24 C -0.119 4.119 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.418 0.582 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.386 0.614 40 H -0.281 1.281 41 H -0.302 1.302 42 H 0.149 0.851 43 H 0.153 0.847 44 H 0.136 0.864 45 H 0.091 0.909 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.179 0.920 0.487 4.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.098 6.098 3 C -0.210 4.210 4 C -0.108 4.108 5 H 0.116 0.884 6 C -0.182 4.182 7 C 0.007 3.993 8 H 0.105 0.895 9 N -0.351 5.351 10 C 0.310 3.690 11 O -0.461 6.461 12 C -0.173 4.173 13 C -0.001 4.001 14 O -0.239 6.239 15 C 0.071 3.929 16 C -0.160 4.160 17 C -0.082 4.082 18 C -0.195 4.195 19 O -0.356 6.356 20 Si 0.680 3.320 21 C -0.174 4.174 22 C -0.093 4.093 23 C -0.230 4.230 24 C -0.159 4.159 25 H 0.102 0.898 26 H 0.122 0.878 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.255 0.745 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.235 0.765 40 H -0.208 1.208 41 H -0.230 1.230 42 H 0.166 0.834 43 H 0.171 0.829 44 H 0.154 0.846 45 H 0.109 0.891 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.847 0.120 -0.009 2.850 hybrid contribution -1.326 1.608 1.043 2.331 sum -4.173 1.729 1.034 4.634 Atomic orbital electron populations 1.23401 0.91788 1.07141 1.05716 1.87223 1.10232 1.14206 1.98186 1.23430 0.99462 0.92346 1.05781 1.22382 0.92376 0.98081 0.98002 0.88353 1.23528 0.98564 0.98934 0.97146 1.21846 0.83308 0.97065 0.97085 0.89479 1.45553 1.05922 1.61851 1.21767 1.20614 0.85749 0.77657 0.84937 1.90734 1.87427 1.46022 1.21959 1.21438 0.89210 1.05984 1.00633 1.22430 0.81495 0.99662 0.96496 1.85955 1.14637 1.78412 1.44860 1.19152 0.86429 0.96287 0.91041 1.20317 0.89545 1.04544 1.01562 1.20176 0.95003 0.98316 0.94747 1.25352 0.99488 1.00845 0.93819 1.86569 1.92799 1.24922 1.31340 0.93903 0.73700 0.81141 0.83208 1.21174 0.99090 1.01453 0.95674 1.21250 0.91109 0.96715 1.00240 1.21557 1.00952 1.05446 0.95005 1.23328 0.96833 0.95758 0.99964 0.89752 0.87821 0.89554 0.88772 0.89276 0.88752 0.92199 0.74490 0.85679 0.85499 0.91636 0.91644 0.85457 0.85668 0.76456 1.20779 1.23026 0.83428 0.82935 0.84594 0.89085 0.87284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.37 10.76 113.37 1.22 1.59 16 2 S -0.32 -0.41 22.37 -56.49 -1.26 -1.68 16 3 C -0.06 0.27 5.78 71.98 0.42 0.68 16 4 C -0.09 0.46 3.54 -10.18 -0.04 0.43 16 5 H 0.10 -0.46 8.13 -2.39 -0.02 -0.48 16 6 C -0.14 0.31 7.45 31.21 0.23 0.54 16 7 C 0.11 -0.29 4.29 45.52 0.20 -0.10 16 8 H 0.09 0.15 7.50 -2.39 -0.02 0.13 16 9 N -0.70 2.64 5.26 -440.05 -2.32 0.32 16 10 C 0.52 0.61 7.83 87.66 0.69 1.29 16 11 O -0.58 -5.86 15.60 -3.02 -0.05 -5.91 16 12 C -0.13 0.44 6.07 29.85 0.18 0.62 16 13 C 0.07 0.14 4.03 71.98 0.29 0.43 16 14 O -0.32 -1.66 10.14 -92.47 -0.94 -2.59 16 15 C 0.12 0.67 6.69 22.51 0.15 0.82 16 16 C -0.14 -0.75 9.55 22.37 0.21 -0.54 16 17 C -0.08 -0.19 5.39 -19.88 -0.11 -0.30 16 18 C -0.09 -0.07 2.82 71.24 0.20 0.13 16 19 O -0.55 -2.19 12.77 -148.98 -1.90 -4.10 16 20 Si 0.78 -1.21 29.79 68.60 2.04 0.84 16 21 C -0.16 -0.01 8.67 22.28 0.19 0.18 16 22 C -0.08 -0.04 10.04 22.26 0.22 0.18 16 23 C -0.21 -0.73 9.04 22.37 0.20 -0.53 16 24 C -0.12 0.89 7.38 31.12 0.23 1.12 16 25 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 26 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 27 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 29 H 0.09 -0.46 7.85 -2.39 -0.02 -0.48 16 30 H 0.09 -0.22 7.91 -2.39 -0.02 -0.24 16 31 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.42 -3.93 8.70 -92.70 -0.81 -4.74 16 33 H 0.13 -0.81 8.14 -2.39 -0.02 -0.83 16 34 H 0.13 -0.89 8.14 -2.39 -0.02 -0.91 16 35 H 0.07 0.21 7.60 -2.39 -0.02 0.19 16 36 H 0.07 0.20 7.64 -2.39 -0.02 0.18 16 37 H 0.13 0.73 8.06 -2.91 -0.02 0.71 16 38 H 0.13 -0.08 7.96 -2.39 -0.02 -0.10 16 39 H 0.39 -0.62 8.70 -74.06 -0.64 -1.26 16 40 H -0.28 -0.56 7.11 99.48 0.71 0.14 16 41 H -0.30 -1.81 7.11 99.48 0.71 -1.11 16 42 H 0.15 -0.66 4.87 -2.91 -0.01 -0.67 16 43 H 0.15 -0.67 8.06 -2.91 -0.02 -0.70 16 44 H 0.14 0.28 6.30 -2.91 -0.02 0.26 16 45 H 0.09 -0.84 8.14 -2.38 -0.02 -0.86 16 46 H 0.11 -0.97 8.10 -2.39 -0.02 -0.99 16 Total: 0.00 -19.77 391.99 -0.35 -20.12 By element: Atomic # 1 Polarization: -13.14 SS G_CDS: -0.42 Total: -13.57 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 4.49 Total: 6.56 kcal Atomic # 7 Polarization: 2.64 SS G_CDS: -2.32 Total: 0.32 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -2.89 Total: -12.60 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: 2.04 Total: 0.84 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -1.26 Total: -1.68 kcal Total: -19.77 -0.35 -20.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_4549614.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.992 kcal (2) G-P(sol) polarization free energy of solvation -19.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds