Wall clock time and date at job start Sun Mar 7 2021 06:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35997 * 117.00109 * 2 1 4 4 C 1.39158 * 120.07433 * 180.02562 * 3 2 1 5 5 O 1.35992 * 120.07266 * 359.97438 * 4 3 2 6 6 C 1.42897 * 116.99955 * 179.72645 * 5 4 3 7 7 C 1.50703 * 109.47327 * 180.02562 * 6 5 4 8 8 O 1.21286 * 119.99513 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00205 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00014 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.85074 * 336.20143 * 10 9 7 12 12 C 1.53782 * 113.61142 * 107.50467 * 10 9 7 13 13 C 1.53962 * 87.11063 * 89.18830 * 12 10 9 14 14 H 1.08993 * 113.61598 * 270.84305 * 13 12 10 15 15 C 1.52999 * 113.66529 * 139.88900 * 13 12 10 16 16 S 1.81398 * 109.47111 * 87.55251 * 15 13 12 17 17 C 1.81401 * 102.99836 * 179.97438 * 16 15 13 18 18 C 1.53781 * 113.61619 * 205.00312 * 10 9 7 19 19 C 1.38562 * 119.85292 * 179.72860 * 4 3 2 20 20 C 1.38251 * 120.00093 * 0.27336 * 19 4 3 21 21 N 1.48001 * 119.92627 * 180.02562 * 20 19 4 22 22 O 1.21801 * 120.00116 * 359.97438 * 21 20 19 23 23 O 1.21804 * 119.99780 * 180.02562 * 21 20 19 24 24 C 1.38245 * 120.14233 * 359.97438 * 20 19 4 25 25 C 1.50704 * 119.92553 * 180.02562 * 24 20 19 26 26 O 1.42898 * 109.47165 * 74.99826 * 25 24 20 27 27 Si 1.86298 * 109.47411 * 195.00013 * 25 24 20 28 28 C 1.38243 * 120.15188 * 0.02562 * 24 20 19 29 29 H 1.09007 * 109.46965 * 299.99783 * 1 2 3 30 30 H 1.08991 * 109.47287 * 59.99555 * 1 2 3 31 31 H 1.09003 * 109.47026 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47142 * 60.00172 * 6 5 4 33 33 H 1.09003 * 109.47242 * 300.00234 * 6 5 4 34 34 H 0.97001 * 120.00013 * 0.02562 * 9 7 6 35 35 H 1.08997 * 113.61668 * 203.66381 * 12 10 9 36 36 H 1.08998 * 113.61674 * 334.48890 * 12 10 9 37 37 H 1.09002 * 109.47053 * 207.55709 * 15 13 12 38 38 H 1.09004 * 109.47121 * 327.55345 * 15 13 12 39 39 H 1.08998 * 109.47101 * 179.97438 * 17 16 15 40 40 H 1.08998 * 109.46896 * 299.99729 * 17 16 15 41 41 H 1.08997 * 109.47113 * 60.00262 * 17 16 15 42 42 H 1.09002 * 113.61445 * 25.43587 * 18 10 9 43 43 H 1.09002 * 113.61408 * 156.25317 * 18 10 9 44 44 H 1.07998 * 120.00063 * 180.25222 * 19 4 3 45 45 H 1.09005 * 109.47014 * 314.99729 * 25 24 20 46 46 H 0.96704 * 114.00072 * 180.02562 * 26 25 24 47 47 H 1.48499 * 110.00256 * 178.67951 * 27 25 24 48 48 H 1.48499 * 110.00091 * 299.99820 * 27 25 24 49 49 H 1.08003 * 120.00552 * 180.02562 * 28 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1796 0.1477 -0.0005 6 6 5.6003 0.3007 -0.0072 7 6 6.2519 -1.0582 -0.0068 8 8 5.5670 -2.0591 -0.0018 9 7 7.5957 -1.1612 -0.0130 10 6 8.2291 -2.4822 -0.0121 11 1 7.5853 -3.2600 0.3988 12 6 8.8710 -2.8584 -1.3579 13 6 10.1567 -2.1849 -0.8442 14 1 10.2135 -1.1208 -1.0728 15 6 11.4350 -2.9417 -1.2106 16 16 12.0127 -2.3984 -2.8421 17 6 13.5103 -3.3902 -3.0956 18 6 9.6498 -2.4837 0.5766 19 6 4.0603 2.5233 -0.0062 20 6 3.3029 3.6799 -0.0056 21 7 3.9714 5.0003 -0.0123 22 8 5.1876 5.0671 -0.0178 23 8 3.3054 6.0201 -0.0113 24 6 1.9225 3.6057 0.0001 25 6 1.1016 4.8696 0.0001 26 8 1.1294 5.4557 -1.3029 27 14 -0.6576 4.4676 0.4628 28 6 1.2932 2.3748 0.0058 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 5.9104 0.8530 0.8799 33 1 5.9027 0.8480 -0.9001 34 1 8.1434 -0.3606 -0.0174 35 1 8.9727 -3.9332 -1.5078 36 1 8.4220 -2.3524 -2.2125 37 1 12.2043 -2.7373 -0.4660 38 1 11.2290 -4.0118 -1.2359 39 1 13.9501 -3.1436 -4.0620 40 1 14.2275 -3.1740 -2.3039 41 1 13.2529 -4.4491 -3.0737 42 1 9.8303 -1.6742 1.2838 43 1 9.9638 -3.4558 0.9568 44 1 5.1386 2.5840 -0.0108 45 1 1.5160 5.5720 0.7234 46 1 0.6210 6.2749 -1.3766 47 1 -1.4703 5.7100 0.4975 48 1 -1.2342 3.5108 -0.5156 49 1 0.2146 2.3196 0.0098 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535148_4549636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:37:32 Heat of formation + Delta-G solvation = -67.251122 kcal Electronic energy + Delta-G solvation = -35131.065901 eV Core-core repulsion = 30157.427291 eV Total energy + Delta-G solvation = -4973.638610 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.132 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.21001 -42.08764 -41.41971 -40.18684 -39.28394 -38.95001 -37.59432 -37.13002 -34.81797 -32.77047 -32.55407 -31.10656 -29.96122 -29.41792 -28.87902 -27.84213 -26.87973 -25.78829 -24.31264 -23.68065 -23.04065 -22.10195 -20.70380 -20.38626 -19.67511 -19.46533 -18.82362 -18.66541 -18.21414 -18.02415 -17.80121 -17.74496 -17.35741 -16.96490 -16.89509 -16.51783 -16.22111 -15.94023 -15.86527 -15.60380 -15.30826 -15.14902 -15.00404 -14.78041 -14.45635 -14.29039 -14.14131 -14.02568 -13.92039 -13.68505 -13.52845 -13.45794 -13.07667 -12.97864 -12.66309 -12.52420 -12.44563 -12.31150 -12.24116 -12.21342 -11.93998 -11.87469 -11.65042 -11.37315 -11.01867 -10.95718 -10.48898 -10.42597 -10.23546 -9.48067 -8.68195 -5.18416 -1.17578 -0.44624 0.35856 0.46249 0.64762 1.02361 1.14928 1.37260 1.37721 1.57892 1.73012 1.76579 1.91166 2.24040 2.85862 3.10732 3.25163 3.27843 3.38466 3.39673 3.45597 3.54727 3.58287 3.62757 3.67645 3.76456 3.86638 3.92912 3.98713 3.98987 4.11430 4.13833 4.17863 4.18742 4.24924 4.29495 4.38456 4.41730 4.56173 4.58939 4.62008 4.67392 4.72378 4.72975 4.87752 4.92436 5.00083 5.38762 5.48745 5.50722 5.96795 6.23974 6.35192 6.80804 6.99696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.284 6.284 3 C 0.171 3.829 4 C 0.109 3.891 5 O -0.264 6.264 6 C 0.031 3.969 7 C 0.522 3.478 8 O -0.506 6.506 9 N -0.709 5.709 10 C 0.121 3.879 11 H 0.109 0.891 12 C -0.143 4.143 13 C -0.096 4.096 14 H 0.100 0.900 15 C -0.076 4.076 16 S -0.264 6.264 17 C -0.122 4.122 18 C -0.135 4.135 19 C -0.118 4.118 20 C -0.025 4.025 21 N 0.037 4.963 22 O -0.173 6.173 23 O -0.139 6.139 24 C 0.009 3.991 25 C -0.085 4.085 26 O -0.523 6.523 27 Si 0.679 3.321 28 C -0.180 4.180 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.404 0.596 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.167 0.833 45 H 0.104 0.896 46 H 0.388 0.612 47 H -0.249 1.249 48 H -0.252 1.252 49 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.181 -2.245 3.944 4.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.195 6.195 3 C 0.122 3.878 4 C 0.062 3.938 5 O -0.176 6.176 6 C -0.047 4.047 7 C 0.306 3.694 8 O -0.379 6.379 9 N -0.363 5.363 10 C 0.016 3.984 11 H 0.127 0.873 12 C -0.181 4.181 13 C -0.116 4.116 14 H 0.118 0.882 15 C -0.224 4.224 16 S -0.038 6.038 17 C -0.291 4.291 18 C -0.174 4.174 19 C -0.138 4.138 20 C -0.110 4.110 21 N 0.555 4.445 22 O -0.384 6.384 23 O -0.358 6.358 24 C 0.007 3.993 25 C -0.194 4.194 26 O -0.331 6.331 27 Si 0.579 3.421 28 C -0.199 4.199 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.132 0.868 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.239 0.761 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.118 0.882 44 H 0.184 0.816 45 H 0.121 0.879 46 H 0.237 0.763 47 H -0.173 1.173 48 H -0.177 1.177 49 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.504 -3.811 2.886 5.011 hybrid contribution 1.298 1.108 -0.145 1.712 sum -0.206 -2.703 2.741 3.855 Atomic orbital electron populations 1.23397 0.76900 1.05657 1.02101 1.86335 1.22388 1.24234 1.86549 1.18411 0.89005 0.85833 0.94504 1.17828 0.88360 0.85310 1.02289 1.86331 1.16776 1.26040 1.88472 1.22651 0.80299 0.97084 1.04701 1.19839 0.82492 0.90209 0.76881 1.90809 1.62530 1.37832 1.46736 1.45454 1.05706 1.09176 1.75956 1.21842 0.93808 0.85248 0.97500 0.87347 1.23543 0.95133 1.01784 0.97664 1.22426 0.92307 1.00318 0.96505 0.88229 1.23421 1.00308 1.02783 0.95866 1.87040 1.32948 1.58172 1.25677 1.23395 0.97482 1.02062 1.06153 1.23401 0.94214 1.03730 0.96095 1.20771 1.02153 0.88900 1.01946 1.20371 0.91911 0.83077 1.15592 1.43297 1.00932 1.02543 0.97695 1.94544 0.95757 1.93738 1.54343 1.94495 1.64688 1.24340 1.52319 1.18851 0.90510 0.95016 0.94938 1.24996 1.09710 0.94404 0.90307 1.86529 1.74951 1.43889 1.27744 0.95408 0.74352 0.83413 0.88916 1.21038 1.01283 0.89596 1.07995 0.91471 0.91922 0.86754 0.88098 0.88186 0.76107 0.88668 0.90499 0.89795 0.89799 0.87960 0.90440 0.90437 0.90213 0.88171 0.81576 0.87857 0.76313 1.17335 1.17678 0.81984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.04 9.81 101.05 0.99 0.95 16 2 O -0.28 -0.36 10.28 -34.23 -0.35 -0.71 16 3 C 0.17 0.17 6.70 -39.12 -0.26 -0.09 16 4 C 0.11 0.13 6.70 -39.12 -0.26 -0.13 16 5 O -0.26 -0.56 9.45 -47.34 -0.45 -1.01 16 6 C 0.03 -0.05 5.22 36.01 0.19 0.14 16 7 C 0.52 0.41 7.91 -10.99 -0.09 0.33 16 8 O -0.51 -2.90 16.10 -14.36 -0.23 -3.13 16 9 N -0.71 1.49 5.26 -53.01 -0.28 1.21 16 10 C 0.12 -0.19 4.32 -67.12 -0.29 -0.48 16 11 H 0.11 0.02 7.47 -51.93 -0.39 -0.37 16 12 C -0.14 0.21 7.44 -25.82 -0.19 0.02 16 13 C -0.10 0.25 3.55 -89.71 -0.32 -0.07 16 14 H 0.10 -0.24 8.13 -51.93 -0.42 -0.66 16 15 C -0.08 0.14 5.78 37.16 0.21 0.36 16 16 S -0.26 -0.13 22.37 -107.50 -2.40 -2.54 16 17 C -0.12 0.18 10.76 101.05 1.09 1.26 16 18 C -0.13 0.47 7.38 -25.92 -0.19 0.27 16 19 C -0.12 -0.06 8.54 -39.46 -0.34 -0.40 16 20 C -0.03 -0.06 6.85 -79.95 -0.55 -0.60 16 21 N 0.04 0.16 4.45 33.96 0.15 0.31 16 22 O -0.17 -0.84 18.44 -29.46 -0.54 -1.38 16 23 O -0.14 -0.66 14.62 -35.96 -0.53 -1.18 16 24 C 0.01 0.01 5.29 -104.62 -0.55 -0.54 16 25 C -0.08 -0.01 1.73 36.01 0.06 0.05 16 26 O -0.52 -0.74 11.77 -55.47 -0.65 -1.39 16 27 Si 0.68 -1.40 30.19 -169.99 -5.13 -6.53 16 28 C -0.18 0.04 7.65 -39.46 -0.30 -0.26 16 29 H 0.07 -0.32 7.65 -51.93 -0.40 -0.71 16 30 H 0.06 -0.21 7.67 -51.93 -0.40 -0.61 16 31 H 0.11 -0.46 8.14 -51.93 -0.42 -0.88 16 32 H 0.10 -0.43 7.66 -51.93 -0.40 -0.83 16 33 H 0.10 -0.38 7.66 -51.93 -0.40 -0.77 16 34 H 0.40 -2.00 8.70 -40.82 -0.36 -2.35 16 35 H 0.09 -0.15 7.90 -51.93 -0.41 -0.56 16 36 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 37 H 0.08 -0.20 8.14 -51.92 -0.42 -0.63 16 38 H 0.08 -0.19 7.85 -51.92 -0.41 -0.60 16 39 H 0.10 -0.18 8.14 -51.92 -0.42 -0.60 16 40 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16 41 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 42 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 43 H 0.10 -0.40 8.10 -51.93 -0.42 -0.82 16 44 H 0.17 -0.28 5.85 -52.49 -0.31 -0.59 16 45 H 0.10 -0.02 6.07 -51.93 -0.32 -0.34 16 46 H 0.39 -0.95 8.74 45.56 0.40 -0.55 16 47 H -0.25 0.00 7.11 56.52 0.40 0.40 16 48 H -0.25 0.08 6.74 56.52 0.38 0.46 16 49 H 0.16 -0.37 3.13 -52.48 -0.16 -0.54 16 LS Contribution 422.00 15.07 6.36 6.36 Total: 0.00 -11.66 422.00 -11.42 -23.08 By element: Atomic # 1 Polarization: -7.34 SS G_CDS: -6.56 Total: -13.90 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -0.80 Total: 0.81 kcal Atomic # 7 Polarization: 1.65 SS G_CDS: -0.13 Total: 1.52 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -2.75 Total: -8.81 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: -5.13 Total: -6.53 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -2.40 Total: -2.54 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -11.66 -11.42 -23.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_4549636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.174 kcal (2) G-P(sol) polarization free energy of solvation -11.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds