Wall clock time and date at job start Sun Mar 7 2021 06:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35997 * 117.00109 * 2 1 4 4 C 1.39158 * 120.07433 * 180.02562 * 3 2 1 5 5 O 1.35992 * 120.07266 * 359.97438 * 4 3 2 6 6 C 1.42897 * 116.99955 * 179.72645 * 5 4 3 7 7 C 1.50703 * 109.47327 * 180.02562 * 6 5 4 8 8 O 1.21286 * 119.99513 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00205 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00014 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.85074 * 336.20143 * 10 9 7 12 12 C 1.53782 * 113.61142 * 107.50467 * 10 9 7 13 13 C 1.53962 * 87.11063 * 89.18830 * 12 10 9 14 14 H 1.08993 * 113.61598 * 270.84305 * 13 12 10 15 15 C 1.52999 * 113.66529 * 139.88900 * 13 12 10 16 16 S 1.81398 * 109.47111 * 87.55251 * 15 13 12 17 17 C 1.81401 * 102.99836 * 179.97438 * 16 15 13 18 18 C 1.53781 * 113.61619 * 205.00312 * 10 9 7 19 19 C 1.38562 * 119.85292 * 179.72860 * 4 3 2 20 20 C 1.38251 * 120.00093 * 0.27336 * 19 4 3 21 21 N 1.48001 * 119.92627 * 180.02562 * 20 19 4 22 22 O 1.21801 * 120.00116 * 359.97438 * 21 20 19 23 23 O 1.21804 * 119.99780 * 180.02562 * 21 20 19 24 24 C 1.38245 * 120.14233 * 359.97438 * 20 19 4 25 25 C 1.50704 * 119.92553 * 180.02562 * 24 20 19 26 26 O 1.42898 * 109.47165 * 74.99826 * 25 24 20 27 27 Si 1.86298 * 109.47411 * 195.00013 * 25 24 20 28 28 C 1.38243 * 120.15188 * 0.02562 * 24 20 19 29 29 H 1.09007 * 109.46965 * 299.99783 * 1 2 3 30 30 H 1.08991 * 109.47287 * 59.99555 * 1 2 3 31 31 H 1.09003 * 109.47026 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47142 * 60.00172 * 6 5 4 33 33 H 1.09003 * 109.47242 * 300.00234 * 6 5 4 34 34 H 0.97001 * 120.00013 * 0.02562 * 9 7 6 35 35 H 1.08997 * 113.61668 * 203.66381 * 12 10 9 36 36 H 1.08998 * 113.61674 * 334.48890 * 12 10 9 37 37 H 1.09002 * 109.47053 * 207.55709 * 15 13 12 38 38 H 1.09004 * 109.47121 * 327.55345 * 15 13 12 39 39 H 1.08998 * 109.47101 * 179.97438 * 17 16 15 40 40 H 1.08998 * 109.46896 * 299.99729 * 17 16 15 41 41 H 1.08997 * 109.47113 * 60.00262 * 17 16 15 42 42 H 1.09002 * 113.61445 * 25.43587 * 18 10 9 43 43 H 1.09002 * 113.61408 * 156.25317 * 18 10 9 44 44 H 1.07998 * 120.00063 * 180.25222 * 19 4 3 45 45 H 1.09005 * 109.47014 * 314.99729 * 25 24 20 46 46 H 0.96704 * 114.00072 * 180.02562 * 26 25 24 47 47 H 1.48499 * 110.00256 * 178.67951 * 27 25 24 48 48 H 1.48499 * 110.00091 * 299.99820 * 27 25 24 49 49 H 1.08003 * 120.00552 * 180.02562 * 28 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1796 0.1477 -0.0005 6 6 5.6003 0.3007 -0.0072 7 6 6.2519 -1.0582 -0.0068 8 8 5.5670 -2.0591 -0.0018 9 7 7.5957 -1.1612 -0.0130 10 6 8.2291 -2.4822 -0.0121 11 1 7.5853 -3.2600 0.3988 12 6 8.8710 -2.8584 -1.3579 13 6 10.1567 -2.1849 -0.8442 14 1 10.2135 -1.1208 -1.0728 15 6 11.4350 -2.9417 -1.2106 16 16 12.0127 -2.3984 -2.8421 17 6 13.5103 -3.3902 -3.0956 18 6 9.6498 -2.4837 0.5766 19 6 4.0603 2.5233 -0.0062 20 6 3.3029 3.6799 -0.0056 21 7 3.9714 5.0003 -0.0123 22 8 5.1876 5.0671 -0.0178 23 8 3.3054 6.0201 -0.0113 24 6 1.9225 3.6057 0.0001 25 6 1.1016 4.8696 0.0001 26 8 1.1294 5.4557 -1.3029 27 14 -0.6576 4.4676 0.4628 28 6 1.2932 2.3748 0.0058 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 5.9104 0.8530 0.8799 33 1 5.9027 0.8480 -0.9001 34 1 8.1434 -0.3606 -0.0174 35 1 8.9727 -3.9332 -1.5078 36 1 8.4220 -2.3524 -2.2125 37 1 12.2043 -2.7373 -0.4660 38 1 11.2290 -4.0118 -1.2359 39 1 13.9501 -3.1436 -4.0620 40 1 14.2275 -3.1740 -2.3039 41 1 13.2529 -4.4491 -3.0737 42 1 9.8303 -1.6742 1.2838 43 1 9.9638 -3.4558 0.9568 44 1 5.1386 2.5840 -0.0108 45 1 1.5160 5.5720 0.7234 46 1 0.6210 6.2749 -1.3766 47 1 -1.4703 5.7100 0.4975 48 1 -1.2342 3.5108 -0.5156 49 1 0.2146 2.3196 0.0098 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_4549636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:37:30 Heat of formation + Delta-G solvation = -67.203446 kcal Electronic energy + Delta-G solvation = -35131.063834 eV Core-core repulsion = 30157.427291 eV Total energy + Delta-G solvation = -4973.636542 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.132 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.40661 -42.13618 -41.39241 -40.14197 -39.29463 -38.99373 -37.77020 -37.24612 -34.82368 -32.78540 -32.59030 -31.01810 -29.85616 -29.32356 -28.73659 -27.92457 -26.71521 -25.82472 -24.27425 -23.64031 -23.09801 -22.08226 -20.77552 -20.30210 -19.87512 -19.46868 -18.92133 -18.69086 -18.36492 -18.04223 -17.77527 -17.74732 -17.30641 -16.89981 -16.84554 -16.47816 -16.13730 -15.88217 -15.80632 -15.56195 -15.29238 -15.09731 -14.95007 -14.74229 -14.33497 -14.24189 -14.07584 -13.92386 -13.87612 -13.57307 -13.51536 -13.33609 -12.94283 -12.85760 -12.69000 -12.58821 -12.41472 -12.38364 -12.32527 -12.19141 -12.10326 -11.91548 -11.52297 -11.24518 -11.11679 -10.88872 -10.48965 -10.41604 -10.19700 -9.50665 -8.69935 -5.01581 -1.34219 -0.44723 0.17384 0.29901 0.74239 1.13530 1.21280 1.35440 1.51838 1.67852 1.82576 1.86386 1.89787 2.31375 2.89550 3.14098 3.28466 3.41802 3.44647 3.49572 3.55211 3.60725 3.73196 3.79088 3.85135 3.92140 3.96158 4.02933 4.12291 4.18258 4.27637 4.29594 4.29785 4.33278 4.36769 4.42761 4.52327 4.60150 4.70063 4.72700 4.74807 4.77040 4.83007 4.86375 5.01266 5.04603 5.14597 5.26475 5.49558 5.58486 6.02385 6.36013 6.50248 6.51663 7.04940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.306 6.306 3 C 0.168 3.832 4 C 0.102 3.898 5 O -0.290 6.290 6 C 0.026 3.974 7 C 0.519 3.481 8 O -0.565 6.565 9 N -0.693 5.693 10 C 0.114 3.886 11 H 0.088 0.912 12 C -0.144 4.144 13 C -0.089 4.089 14 H 0.100 0.900 15 C -0.062 4.062 16 S -0.325 6.325 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.109 4.109 20 C -0.045 4.045 21 N 0.038 4.962 22 O -0.191 6.191 23 O -0.156 6.156 24 C 0.004 3.996 25 C -0.106 4.106 26 O -0.547 6.547 27 Si 0.769 3.231 28 C -0.173 4.173 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.420 0.580 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.110 0.890 44 H 0.186 0.814 45 H 0.102 0.898 46 H 0.400 0.600 47 H -0.277 1.277 48 H -0.269 1.269 49 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.286 -2.307 4.904 5.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.217 6.217 3 C 0.119 3.881 4 C 0.055 3.945 5 O -0.203 6.203 6 C -0.051 4.051 7 C 0.305 3.695 8 O -0.442 6.442 9 N -0.347 5.347 10 C 0.009 3.991 11 H 0.106 0.894 12 C -0.183 4.183 13 C -0.108 4.108 14 H 0.119 0.881 15 C -0.210 4.210 16 S -0.099 6.099 17 C -0.280 4.280 18 C -0.157 4.157 19 C -0.129 4.129 20 C -0.129 4.129 21 N 0.552 4.448 22 O -0.400 6.400 23 O -0.373 6.373 24 C 0.002 3.998 25 C -0.213 4.213 26 O -0.357 6.357 27 Si 0.670 3.330 28 C -0.191 4.191 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.143 0.857 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.258 0.742 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.128 0.872 44 H 0.203 0.797 45 H 0.120 0.880 46 H 0.252 0.748 47 H -0.203 1.203 48 H -0.196 1.196 49 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.323 -3.820 3.846 5.580 hybrid contribution 1.261 1.062 -0.474 1.716 sum -0.061 -2.758 3.372 4.356 Atomic orbital electron populations 1.23738 0.75028 1.06998 1.03593 1.86319 1.24503 1.24551 1.86356 1.18640 0.89271 0.86193 0.93964 1.17918 0.88609 0.85225 1.02774 1.86297 1.18464 1.26755 1.88735 1.22919 0.78791 0.96036 1.07381 1.20302 0.82987 0.90432 0.75751 1.90782 1.63872 1.39790 1.49797 1.45361 1.05098 1.09830 1.74390 1.21864 0.94461 0.85034 0.97782 0.89400 1.23534 0.95942 1.01772 0.97034 1.22378 0.91421 1.00133 0.96914 0.88149 1.23433 1.00563 1.02971 0.94050 1.87230 1.34838 1.59547 1.28302 1.23398 0.96243 1.01845 1.06561 1.23337 0.91922 1.04807 0.95644 1.20906 1.03051 0.88049 1.00862 1.20540 0.92564 0.82263 1.17553 1.43555 1.00827 1.03206 0.97204 1.94517 0.96325 1.94055 1.55061 1.94481 1.64613 1.25276 1.52923 1.19112 0.90354 0.95898 0.94468 1.25411 1.11928 0.94085 0.89835 1.86478 1.75849 1.44897 1.28511 0.94358 0.70553 0.80966 0.87086 1.21163 1.02098 0.88614 1.07275 0.89155 0.91205 0.85675 0.84919 0.85724 0.74177 0.88714 0.92170 0.88680 0.89287 0.87881 0.89522 0.89769 0.88804 0.87205 0.79682 0.88007 0.74822 1.20275 1.19589 0.80010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -0.82 10.28 -79.65 -0.82 -1.64 16 3 C 0.17 0.34 6.70 22.57 0.15 0.49 16 4 C 0.10 0.26 6.70 22.57 0.15 0.42 16 5 O -0.29 -1.38 9.45 -67.05 -0.63 -2.01 16 6 C 0.03 -0.08 5.22 71.24 0.37 0.29 16 7 C 0.52 1.20 7.91 87.66 0.69 1.89 16 8 O -0.56 -7.62 16.10 15.99 0.26 -7.36 16 9 N -0.69 2.88 5.26 -440.03 -2.32 0.57 16 10 C 0.11 -0.31 4.32 45.52 0.20 -0.11 16 11 H 0.09 0.17 7.47 -2.38 -0.02 0.16 16 12 C -0.14 0.32 7.44 31.18 0.23 0.55 16 13 C -0.09 0.50 3.55 -10.20 -0.04 0.46 16 14 H 0.10 -0.54 8.13 -2.39 -0.02 -0.56 16 15 C -0.06 0.28 5.78 71.98 0.42 0.69 16 16 S -0.32 -0.43 22.37 -56.49 -1.26 -1.70 16 17 C -0.11 0.35 10.76 113.37 1.22 1.57 16 18 C -0.12 0.93 7.38 31.12 0.23 1.16 16 19 C -0.11 -0.10 8.54 22.35 0.19 0.09 16 20 C -0.04 -0.21 6.85 36.38 0.25 0.03 16 21 N 0.04 0.35 4.45 -46.46 -0.21 0.15 16 22 O -0.19 -2.00 18.44 18.88 0.35 -1.65 16 23 O -0.16 -1.65 14.62 25.10 0.37 -1.28 16 24 C 0.00 0.01 5.29 -19.86 -0.11 -0.10 16 25 C -0.11 -0.03 1.73 71.24 0.12 0.09 16 26 O -0.55 -1.83 11.77 -129.63 -1.53 -3.35 16 27 Si 0.77 -3.87 30.19 68.60 2.07 -1.80 16 28 C -0.17 0.16 7.65 22.35 0.17 0.33 16 29 H 0.09 -0.99 7.65 -2.38 -0.02 -1.01 16 30 H 0.07 -0.53 7.67 -2.39 -0.02 -0.55 16 31 H 0.13 -1.08 8.14 -2.39 -0.02 -1.10 16 32 H 0.13 -1.32 7.66 -2.39 -0.02 -1.34 16 33 H 0.13 -1.05 7.66 -2.39 -0.02 -1.07 16 34 H 0.42 -4.55 8.70 -92.71 -0.81 -5.36 16 35 H 0.09 -0.22 7.90 -2.39 -0.02 -0.23 16 36 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 38 H 0.09 -0.47 7.85 -2.39 -0.02 -0.49 16 39 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 40 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 42 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 43 H 0.11 -1.03 8.10 -2.39 -0.02 -1.04 16 44 H 0.19 -0.77 5.85 -2.91 -0.02 -0.79 16 45 H 0.10 0.01 6.07 -2.38 -0.01 0.00 16 46 H 0.40 -1.71 8.74 -74.05 -0.65 -2.35 16 47 H -0.28 0.14 7.11 99.48 0.71 0.84 16 48 H -0.27 0.56 6.74 99.48 0.67 1.23 16 49 H 0.18 -1.06 3.13 -2.91 -0.01 -1.07 16 Total: 0.00 -29.81 422.00 1.22 -28.58 By element: Atomic # 1 Polarization: -17.07 SS G_CDS: -0.42 Total: -17.49 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 5.37 Total: 8.98 kcal Atomic # 7 Polarization: 3.24 SS G_CDS: -2.52 Total: 0.71 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -2.01 Total: -17.29 kcal Atomic # 14 Polarization: -3.87 SS G_CDS: 2.07 Total: -1.80 kcal Atomic # 16 Polarization: -0.43 SS G_CDS: -1.26 Total: -1.70 kcal Total: -29.81 1.22 -28.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_4549636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.619 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds