Wall clock time and date at job start Sun Mar 7 2021 06:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81399 * 103.00238 * 2 1 4 4 C 1.53006 * 109.47007 * 179.97438 * 3 2 1 5 5 H 1.09003 * 112.85166 * 43.80432 * 4 3 2 6 6 C 1.53784 * 113.61135 * 174.99807 * 4 3 2 7 7 C 1.53781 * 87.07913 * 139.98262 * 6 4 3 8 8 H 1.09003 * 113.60746 * 220.02045 * 7 6 4 9 9 N 1.46494 * 113.61776 * 89.20128 * 7 6 4 10 10 C 1.34773 * 119.99949 * 154.99839 * 9 7 6 11 11 O 1.21275 * 120.00446 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99800 * 179.97438 * 10 9 7 13 13 O 1.42895 * 109.47069 * 180.02562 * 12 10 9 14 14 C 1.35902 * 117.00176 * 180.02562 * 13 12 10 15 15 C 1.38710 * 120.06198 * 179.97438 * 14 13 12 16 16 C 1.38158 * 119.94995 * 180.02562 * 15 14 13 17 17 C 1.50697 * 119.97390 * 180.02562 * 16 15 14 18 18 O 1.42900 * 109.47500 * 300.00125 * 17 16 15 19 19 Si 1.86301 * 109.47121 * 179.97438 * 17 16 15 20 20 C 1.38247 * 120.05324 * 359.97438 * 16 15 14 21 21 C 1.38288 * 120.11103 * 0.02562 * 20 16 15 22 22 C 1.38116 * 120.05718 * 359.67773 * 21 20 16 23 23 C 1.53780 * 113.61185 * 272.49368 * 4 3 2 24 24 H 1.08997 * 109.47504 * 300.00249 * 1 2 3 25 25 H 1.09001 * 109.46984 * 59.99943 * 1 2 3 26 26 H 1.09002 * 109.47049 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47659 * 59.99879 * 3 2 1 28 28 H 1.09000 * 109.46960 * 299.99674 * 3 2 1 29 29 H 1.09004 * 113.61147 * 254.52694 * 6 4 3 30 30 H 1.08995 * 113.61447 * 25.34685 * 6 4 3 31 31 H 0.97000 * 119.99836 * 334.99328 * 9 7 6 32 32 H 1.09001 * 109.47014 * 300.00277 * 12 10 9 33 33 H 1.08998 * 109.47033 * 59.99851 * 12 10 9 34 34 H 1.08009 * 120.02307 * 359.97438 * 15 14 13 35 35 H 1.09000 * 109.47239 * 60.00230 * 17 16 15 36 36 H 0.96697 * 113.99558 * 299.99861 * 18 17 16 37 37 H 1.48506 * 109.99894 * 179.97438 * 19 17 16 38 38 H 1.48494 * 110.00470 * 301.32291 * 19 17 16 39 39 H 1.07999 * 119.94123 * 180.02562 * 20 16 15 40 40 H 1.08003 * 119.96548 * 179.97438 * 21 20 16 41 41 H 1.07998 * 120.03343 * 180.32234 * 22 21 20 42 42 H 1.08996 * 113.61507 * 334.56463 * 23 4 3 43 43 H 1.08996 * 113.61313 * 105.47850 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9398 0.0006 5 1 4.2450 1.2671 -0.6944 6 6 4.1963 3.4040 -0.1222 7 6 5.2868 3.0701 0.9095 8 1 5.4505 3.8599 1.6428 9 7 6.5318 2.5829 0.3107 10 6 7.6980 2.7249 0.9711 11 8 7.7168 3.2566 2.0610 12 6 8.9787 2.2231 0.3553 13 8 10.0685 2.4869 1.2411 14 6 11.3040 2.0946 0.8332 15 6 12.4073 2.3199 1.6433 16 6 13.6624 1.9206 1.2260 17 6 14.8612 2.1645 2.1059 18 8 15.0043 3.5673 2.3381 19 14 16.3913 1.5144 1.2650 20 6 13.8192 1.2965 0.0025 21 6 12.7210 1.0708 -0.8070 22 6 11.4633 1.4625 -0.3918 23 6 4.3607 1.9484 1.4086 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8032 2.2372 0.8899 28 1 1.8032 2.2371 -0.8900 29 1 4.5897 3.6581 -1.1065 30 1 3.4586 4.1214 0.2369 31 1 6.5168 2.1579 -0.5612 32 1 8.9027 1.1495 0.1830 33 1 9.1495 2.7321 -0.5932 34 1 12.2853 2.8078 2.5991 35 1 14.7241 1.6510 3.0575 36 1 15.1304 4.0882 1.5332 37 1 17.5808 1.7495 2.1224 38 1 16.2418 0.0629 0.9898 39 1 14.8011 0.9848 -0.3217 40 1 12.8462 0.5834 -1.7626 41 1 10.6052 1.2814 -1.0220 42 1 3.6685 2.2680 2.1876 43 1 4.8868 1.0275 1.6601 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535148_4860298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:37:45 Heat of formation + Delta-G solvation = -47.565737 kcal Electronic energy + Delta-G solvation = -23969.286030 eV Core-core repulsion = 20301.737289 eV Total energy + Delta-G solvation = -3667.548741 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.123 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.68092 -41.07895 -39.69299 -38.72294 -37.20045 -34.78679 -32.48646 -31.81406 -30.87217 -29.87560 -28.97225 -26.88379 -26.79818 -24.13700 -23.68386 -22.75617 -21.69635 -20.42549 -19.34179 -18.56311 -17.66789 -17.55483 -17.45600 -17.22266 -16.96983 -16.70657 -16.13997 -16.07997 -15.89261 -15.34422 -15.23693 -15.14839 -14.95433 -14.69376 -14.43811 -14.16387 -14.06389 -13.97503 -13.78173 -13.49901 -13.45902 -12.97148 -12.93799 -12.58381 -12.24404 -12.18127 -11.94158 -11.66337 -11.65305 -11.37265 -10.97610 -10.93484 -10.49088 -10.20931 -9.92689 -9.28155 -8.69886 -5.02729 0.18642 0.38808 0.63278 1.25606 1.41341 1.43875 1.56422 1.64266 1.97843 2.50487 2.65766 3.26739 3.38085 3.40596 3.48552 3.57432 3.62739 3.65030 3.73627 3.86394 3.87904 3.99667 4.10465 4.12364 4.16706 4.17316 4.24132 4.35708 4.38093 4.53329 4.55981 4.58729 4.59287 4.69003 4.71081 4.87959 4.92592 4.95640 5.00573 5.21856 5.33546 5.41581 5.43534 5.63339 6.20693 6.35228 6.58868 7.05193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.265 6.265 3 C -0.076 4.076 4 C -0.096 4.096 5 H 0.099 0.901 6 C -0.135 4.135 7 C 0.121 3.879 8 H 0.108 0.892 9 N -0.711 5.711 10 C 0.519 3.481 11 O -0.509 6.509 12 C 0.041 3.959 13 O -0.288 6.288 14 C 0.129 3.871 15 C -0.121 4.121 16 C -0.080 4.080 17 C -0.071 4.071 18 O -0.538 6.538 19 Si 0.694 3.306 20 C -0.154 4.154 21 C -0.072 4.072 22 C -0.206 4.206 23 C -0.143 4.143 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.403 0.597 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.136 0.864 35 H 0.116 0.884 36 H 0.380 0.620 37 H -0.254 1.254 38 H -0.258 1.258 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.095 0.905 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.515 0.026 -7.480 7.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.039 6.039 3 C -0.224 4.224 4 C -0.115 4.115 5 H 0.117 0.883 6 C -0.174 4.174 7 C 0.016 3.984 8 H 0.126 0.874 9 N -0.364 5.364 10 C 0.303 3.697 11 O -0.382 6.382 12 C -0.038 4.038 13 O -0.200 6.200 14 C 0.084 3.916 15 C -0.139 4.139 16 C -0.080 4.080 17 C -0.182 4.182 18 O -0.343 6.343 19 Si 0.596 3.404 20 C -0.172 4.172 21 C -0.090 4.090 22 C -0.225 4.225 23 C -0.181 4.181 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.120 0.880 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.237 0.763 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.154 0.846 35 H 0.133 0.867 36 H 0.227 0.773 37 H -0.180 1.180 38 H -0.183 1.183 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.113 0.887 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.291 -1.116 -5.812 6.057 hybrid contribution -1.684 0.452 -0.381 1.785 sum -2.974 -0.663 -6.193 6.902 Atomic orbital electron populations 1.23395 0.93960 1.06756 1.04971 1.87021 1.07619 1.11210 1.98052 1.23429 0.99276 0.94599 1.05081 1.22397 0.92688 0.97486 0.98950 0.88294 1.23401 0.97735 0.96303 1.00005 1.21828 0.82433 0.97610 0.96571 0.87407 1.45462 1.05991 1.62359 1.22605 1.20034 0.84387 0.79452 0.85784 1.90793 1.86311 1.41221 1.19877 1.22451 0.85283 1.02258 0.93792 1.86173 1.12881 1.77039 1.43944 1.19046 0.84514 0.94794 0.93266 1.20270 0.89352 1.03397 1.00900 1.20161 0.94812 0.97914 0.95130 1.25135 1.02704 0.87182 1.03129 1.86523 1.95372 1.16292 1.36125 0.94640 0.76589 0.82165 0.87004 1.20949 0.99039 1.02601 0.94627 1.20906 0.91508 0.97318 0.99316 1.21297 0.99172 1.05216 0.96830 1.23512 0.98485 0.99750 0.96385 0.90419 0.90445 0.87958 0.89784 0.89810 0.90266 0.88177 0.76250 0.88711 0.88640 0.84584 0.86668 0.77317 1.17954 1.18276 0.85344 0.85074 0.85238 0.88656 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.19 10.76 101.05 1.09 1.28 16 2 S -0.26 -0.10 22.37 -107.50 -2.40 -2.51 16 3 C -0.08 0.15 5.78 37.16 0.21 0.36 16 4 C -0.10 0.24 3.54 -89.80 -0.32 -0.07 16 5 H 0.10 -0.24 8.13 -51.93 -0.42 -0.66 16 6 C -0.13 0.45 7.39 -25.92 -0.19 0.26 16 7 C 0.12 -0.15 4.32 -67.12 -0.29 -0.44 16 8 H 0.11 0.07 7.46 -51.93 -0.39 -0.32 16 9 N -0.71 1.27 5.27 -53.02 -0.28 0.99 16 10 C 0.52 0.72 7.91 -10.98 -0.09 0.64 16 11 O -0.51 -3.32 16.10 -14.35 -0.23 -3.55 16 12 C 0.04 -0.04 5.22 36.01 0.19 0.15 16 13 O -0.29 -0.91 9.67 -39.34 -0.38 -1.29 16 14 C 0.13 0.27 6.69 -39.21 -0.26 0.00 16 15 C -0.12 -0.30 9.55 -39.44 -0.38 -0.68 16 16 C -0.08 -0.07 5.39 -104.65 -0.56 -0.64 16 17 C -0.07 -0.03 2.82 36.00 0.10 0.07 16 18 O -0.54 -0.53 12.77 -35.23 -0.45 -0.98 16 19 Si 0.69 -0.62 29.79 -169.99 -5.06 -5.68 16 20 C -0.15 0.06 8.67 -39.56 -0.34 -0.29 16 21 C -0.07 0.06 10.04 -39.61 -0.40 -0.34 16 22 C -0.21 0.06 9.04 -39.43 -0.36 -0.29 16 23 C -0.14 0.19 7.43 -25.92 -0.19 -0.01 16 24 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 25 H 0.08 -0.17 8.14 -51.92 -0.42 -0.60 16 26 H 0.10 -0.19 8.14 -51.92 -0.42 -0.61 16 27 H 0.08 -0.19 7.84 -51.93 -0.41 -0.60 16 28 H 0.08 -0.21 8.14 -51.92 -0.42 -0.63 16 29 H 0.08 -0.31 8.14 -51.93 -0.42 -0.74 16 30 H 0.10 -0.38 8.10 -51.93 -0.42 -0.80 16 31 H 0.40 -1.94 8.70 -40.82 -0.36 -2.30 16 32 H 0.10 -0.31 7.65 -51.93 -0.40 -0.71 16 33 H 0.10 -0.34 7.67 -51.93 -0.40 -0.74 16 34 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16 35 H 0.12 0.11 7.96 -51.93 -0.41 -0.31 16 36 H 0.38 -1.14 8.70 45.56 0.40 -0.75 16 37 H -0.25 -0.60 7.11 56.52 0.40 -0.20 16 38 H -0.26 -0.33 7.11 56.52 0.40 0.07 16 39 H 0.13 -0.29 4.87 -52.49 -0.26 -0.54 16 40 H 0.13 -0.42 8.06 -52.48 -0.42 -0.84 16 41 H 0.13 -0.38 6.30 -52.49 -0.33 -0.71 16 42 H 0.10 -0.13 7.89 -51.93 -0.41 -0.54 16 43 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 LS Contribution 370.96 15.07 5.59 5.59 Total: 0.00 -9.56 370.96 -11.39 -20.95 By element: Atomic # 1 Polarization: -7.15 SS G_CDS: -6.38 Total: -13.53 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -1.79 Total: 0.01 kcal Atomic # 7 Polarization: 1.27 SS G_CDS: -0.28 Total: 0.99 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -1.06 Total: -5.82 kcal Atomic # 14 Polarization: -0.62 SS G_CDS: -5.06 Total: -5.68 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -2.40 Total: -2.51 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -9.56 -11.39 -20.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_4860298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.615 kcal (2) G-P(sol) polarization free energy of solvation -9.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds