Wall clock time and date at job start Sun Mar 7 2021 06:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35975 * 117.00575 * 2 1 4 4 C 1.38677 * 120.00440 * 179.97438 * 3 2 1 5 5 C 1.38155 * 120.00022 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.99563 * 179.97438 * 5 4 3 7 7 O 1.42905 * 109.46843 * 105.02876 * 6 5 4 8 8 Si 1.86291 * 109.47565 * 345.02814 * 6 5 4 9 9 C 1.38673 * 119.99955 * 0.02562 * 5 4 3 10 10 O 1.35985 * 119.99559 * 180.02562 * 9 5 4 11 11 C 1.42901 * 116.99650 * 179.97438 * 10 9 5 12 12 C 1.50704 * 109.46992 * 179.97438 * 11 10 9 13 13 O 1.21274 * 119.99891 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99981 * 179.97438 * 12 11 10 15 15 C 1.46500 * 120.00085 * 179.97438 * 14 12 11 16 16 H 1.09005 * 112.84665 * 334.66693 * 15 14 12 17 17 C 1.53781 * 113.61395 * 105.86132 * 15 14 12 18 18 C 1.54055 * 86.98323 * 89.16267 * 17 15 14 19 19 H 1.08998 * 113.69152 * 270.87271 * 18 17 15 20 20 C 1.52995 * 113.61834 * 139.97437 * 18 17 15 21 21 S 1.81402 * 109.46734 * 87.50843 * 20 18 17 22 22 C 1.81408 * 103.00029 * 180.02562 * 21 20 18 23 23 C 1.53782 * 113.61418 * 203.47365 * 15 14 12 24 24 C 1.38716 * 120.00239 * 0.27031 * 9 5 4 25 25 C 1.38113 * 119.99817 * 359.45193 * 24 9 5 26 26 H 1.09005 * 109.46807 * 59.99903 * 1 2 3 27 27 H 1.08997 * 109.47645 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47396 * 300.00618 * 1 2 3 29 29 H 1.07997 * 119.99583 * 0.04994 * 4 3 2 30 30 H 1.09000 * 109.47043 * 225.02338 * 6 5 4 31 31 H 0.96701 * 114.00029 * 59.99170 * 7 6 5 32 32 H 1.48496 * 110.00381 * 178.68173 * 8 6 5 33 33 H 1.48504 * 109.99951 * 299.99765 * 8 6 5 34 34 H 1.08996 * 109.47352 * 299.99791 * 11 10 9 35 35 H 1.08999 * 109.47144 * 59.99816 * 11 10 9 36 36 H 0.96998 * 119.99384 * 0.02562 * 14 12 11 37 37 H 1.08994 * 113.61175 * 203.66405 * 17 15 14 38 38 H 1.08997 * 113.61183 * 334.56951 * 17 15 14 39 39 H 1.08998 * 109.47541 * 207.50513 * 20 18 17 40 40 H 1.08999 * 109.47513 * 327.50761 * 20 18 17 41 41 H 1.09003 * 109.46869 * 300.00077 * 22 21 20 42 42 H 1.08998 * 109.47156 * 59.99837 * 22 21 20 43 43 H 1.08997 * 109.47047 * 180.02562 * 22 21 20 44 44 H 1.08995 * 113.61357 * 25.43044 * 23 15 14 45 45 H 1.08995 * 113.61198 * 156.24997 * 23 15 14 46 46 H 1.08000 * 120.00109 * 179.70706 * 24 9 5 47 47 H 1.08000 * 119.99985 * 180.25559 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4313 1.2840 0.0005 5 6 4.0585 2.5150 0.0011 6 6 5.5635 2.5937 0.0022 7 8 6.0219 2.9675 -1.2986 8 14 6.2720 0.9317 0.4565 9 6 3.3033 3.6780 0.0016 10 8 3.9207 4.8896 0.0016 11 6 3.0808 6.0457 0.0016 12 6 3.9351 7.2872 0.0022 13 8 5.1441 7.1914 0.0022 14 7 3.3555 8.5041 0.0018 15 6 4.1860 9.7110 0.0030 16 1 5.1734 9.5449 0.4339 17 6 4.2194 10.4370 -1.3522 18 6 2.9845 11.2218 -0.8702 19 1 2.0374 10.7382 -1.1094 20 6 3.0099 12.7020 -1.2564 21 16 2.2812 12.9094 -2.9046 22 6 2.4000 14.6983 -3.1812 23 6 3.4698 10.9509 0.5637 24 6 1.9180 3.6055 0.0073 25 6 1.2909 2.3750 0.0009 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 4.0194 0.3782 0.0001 30 1 5.8878 3.3380 0.7295 31 1 5.6914 3.8246 -1.6009 32 1 7.7557 0.9877 0.4302 33 1 5.8028 0.5316 1.8074 34 1 2.4516 6.0377 -0.8883 35 1 2.4515 6.0376 0.8916 36 1 2.3886 8.5806 0.0015 37 1 5.1039 11.0582 -1.4929 38 1 4.0195 9.7845 -2.2021 39 1 2.4352 13.2769 -0.5302 40 1 4.0403 13.0571 -1.2673 41 1 1.8409 15.2236 -2.4068 42 1 3.4459 15.0030 -3.1441 43 1 1.9842 14.9433 -4.1585 44 1 2.6651 10.7131 1.2594 45 1 4.1497 11.7117 0.9471 46 1 1.3299 4.5113 0.0125 47 1 0.2124 2.3185 0.0012 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_4974302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:37:47 Heat of formation + Delta-G solvation = -83.142369 kcal Electronic energy + Delta-G solvation = -28624.384499 eV Core-core repulsion = 24481.073229 eV Total energy + Delta-G solvation = -4143.311270 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.138 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.87942 -41.29300 -40.16576 -39.33063 -38.09153 -36.93592 -34.81890 -32.82534 -31.34470 -30.63968 -29.76824 -29.02721 -27.94192 -26.74300 -26.59957 -24.33055 -23.46028 -22.42395 -21.95406 -20.35160 -19.53852 -18.83116 -18.51563 -18.07084 -17.58367 -17.51163 -17.25000 -16.90787 -16.61479 -16.14785 -16.08290 -15.90739 -15.56423 -15.44897 -15.27341 -15.18106 -14.98768 -14.51288 -14.31024 -14.19125 -14.10276 -13.92080 -13.65018 -13.53653 -13.43603 -13.35014 -13.04589 -12.87071 -12.51761 -12.30855 -12.12418 -12.03317 -11.54446 -11.45406 -11.31924 -11.26558 -11.24750 -11.03784 -10.90283 -10.19849 -10.10391 -8.83059 -8.70628 -4.94005 0.05767 0.32551 0.73107 1.32901 1.37776 1.40855 1.57482 1.66631 1.90900 2.34416 2.52751 2.55435 3.39781 3.44589 3.52956 3.53801 3.70951 3.72888 3.78279 3.84769 3.92696 4.05501 4.08590 4.12308 4.20540 4.26449 4.27162 4.28893 4.32190 4.40906 4.44868 4.45338 4.50648 4.69060 4.71758 4.74954 4.79704 4.80701 4.85756 4.96635 4.99601 5.02832 5.11640 5.13526 5.20090 5.40638 5.51952 6.11267 6.37985 6.44768 6.50532 7.07172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.091 3.909 4 C -0.118 4.118 5 C -0.118 4.118 6 C -0.082 4.082 7 O -0.545 6.545 8 Si 0.811 3.189 9 C 0.089 3.911 10 O -0.316 6.316 11 C 0.038 3.962 12 C 0.515 3.485 13 O -0.569 6.569 14 N -0.693 5.693 15 C 0.114 3.886 16 H 0.083 0.917 17 C -0.144 4.144 18 C -0.086 4.086 19 H 0.102 0.898 20 C -0.064 4.064 21 S -0.322 6.322 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.160 4.160 25 C -0.161 4.161 26 H 0.067 0.933 27 H 0.115 0.885 28 H 0.066 0.934 29 H 0.153 0.847 30 H 0.062 0.938 31 H 0.371 0.629 32 H -0.294 1.294 33 H -0.264 1.264 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.420 0.580 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.108 0.892 46 H 0.167 0.833 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.845 3.969 1.531 10.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.046 3.954 4 C -0.136 4.136 5 C -0.120 4.120 6 C -0.189 4.189 7 O -0.351 6.351 8 Si 0.713 3.287 9 C 0.044 3.956 10 O -0.230 6.230 11 C -0.040 4.040 12 C 0.302 3.698 13 O -0.447 6.447 14 N -0.347 5.347 15 C 0.008 3.992 16 H 0.101 0.899 17 C -0.183 4.183 18 C -0.106 4.106 19 H 0.120 0.880 20 C -0.211 4.211 21 S -0.097 6.097 22 C -0.281 4.281 23 C -0.157 4.157 24 C -0.178 4.178 25 C -0.180 4.180 26 H 0.086 0.914 27 H 0.133 0.867 28 H 0.085 0.915 29 H 0.170 0.830 30 H 0.079 0.921 31 H 0.220 0.780 32 H -0.222 1.222 33 H -0.189 1.189 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.258 0.742 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.122 0.878 44 H 0.113 0.887 45 H 0.126 0.874 46 H 0.184 0.816 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.347 2.021 1.435 8.707 hybrid contribution -0.328 3.008 0.897 3.156 sum -8.674 5.029 2.332 10.294 Atomic orbital electron populations 1.23356 0.76374 1.05632 1.02361 1.86084 1.23396 1.26297 1.88919 1.18976 0.91931 0.85362 0.99152 1.20184 0.92437 0.96776 1.04245 1.19453 0.96003 0.91002 1.05498 1.25530 0.92852 1.12548 0.87996 1.86660 1.74181 1.42206 1.32077 0.92212 0.76225 0.79010 0.81302 1.18800 0.91749 0.84223 1.00819 1.86084 1.35519 1.11930 1.89468 1.22704 0.92580 0.81831 1.06846 1.20537 0.88340 0.85415 0.75539 1.90770 1.16715 1.87309 1.49926 1.45353 1.11085 1.03735 1.74512 1.21844 0.95466 0.84079 0.97806 0.89902 1.23538 0.98869 0.98839 0.97022 1.22383 0.99010 0.92525 0.96658 0.87953 1.23437 1.03437 1.00377 0.93888 1.87196 1.82551 1.13220 1.26696 1.23404 1.05850 0.92287 1.06560 1.23327 1.00939 0.95784 0.95680 1.21370 0.92038 1.00040 1.04339 1.21423 1.01605 0.90914 1.04045 0.91436 0.86714 0.91530 0.83031 0.92081 0.78022 1.22189 1.18903 0.85723 0.85807 0.74184 0.88917 0.92091 0.88663 0.89440 0.89516 0.89839 0.87819 0.88735 0.87377 0.81560 0.82102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.76 10.50 -93.27 -0.98 -1.74 16 3 C 0.09 0.26 6.69 22.49 0.15 0.41 16 4 C -0.12 -0.55 8.59 22.35 0.19 -0.36 16 5 C -0.12 -0.76 5.28 -19.78 -0.10 -0.86 16 6 C -0.08 -0.71 2.33 71.24 0.17 -0.54 16 7 O -0.55 -5.73 12.65 -148.98 -1.89 -7.61 16 8 Si 0.81 4.61 30.17 68.60 2.07 6.68 16 9 C 0.09 0.34 6.62 22.49 0.15 0.49 16 10 O -0.32 -1.55 8.56 -74.34 -0.64 -2.19 16 11 C 0.04 -0.15 5.22 71.24 0.37 0.22 16 12 C 0.52 1.09 7.91 87.66 0.69 1.78 16 13 O -0.57 -7.83 16.12 16.03 0.26 -7.57 16 14 N -0.69 3.20 5.26 -440.03 -2.32 0.88 16 15 C 0.11 -0.30 4.29 45.52 0.20 -0.10 16 16 H 0.08 0.22 7.50 -2.38 -0.02 0.21 16 17 C -0.14 0.33 7.45 31.21 0.23 0.56 16 18 C -0.09 0.53 3.55 -10.17 -0.04 0.49 16 19 H 0.10 -0.65 8.13 -2.39 -0.02 -0.67 16 20 C -0.06 0.31 5.78 71.98 0.42 0.72 16 21 S -0.32 -0.21 22.37 -56.49 -1.26 -1.47 16 22 C -0.11 0.41 10.76 113.37 1.22 1.63 16 23 C -0.12 0.96 7.38 31.12 0.23 1.18 16 24 C -0.16 0.33 9.03 22.35 0.20 0.54 16 25 C -0.16 0.27 9.03 22.36 0.20 0.47 16 26 H 0.07 -0.54 7.66 -2.38 -0.02 -0.55 16 27 H 0.11 -0.96 8.14 -2.39 -0.02 -0.98 16 28 H 0.07 -0.53 7.66 -2.39 -0.02 -0.55 16 29 H 0.15 0.28 5.13 -2.91 -0.01 0.27 16 30 H 0.06 0.68 7.82 -2.39 -0.02 0.66 16 31 H 0.37 3.03 8.60 -74.06 -0.64 2.39 16 32 H -0.29 -3.53 7.11 99.48 0.71 -2.83 16 33 H -0.26 -1.97 7.11 99.48 0.71 -1.26 16 34 H 0.13 -1.25 7.67 -2.39 -0.02 -1.26 16 35 H 0.12 -1.25 7.65 -2.39 -0.02 -1.27 16 36 H 0.42 -4.97 8.70 -92.71 -0.81 -5.77 16 37 H 0.09 -0.18 7.90 -2.39 -0.02 -0.20 16 38 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 40 H 0.09 -0.46 7.85 -2.39 -0.02 -0.48 16 41 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 42 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 43 H 0.10 -0.42 8.14 -2.39 -0.02 -0.44 16 44 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 45 H 0.11 -0.99 8.10 -2.39 -0.02 -1.01 16 46 H 0.17 -1.62 6.29 -2.91 -0.02 -1.64 16 47 H 0.16 -1.20 6.29 -2.91 -0.02 -1.22 16 Total: 0.00 -24.78 399.51 0.23 -24.54 By element: Atomic # 1 Polarization: -18.75 SS G_CDS: -0.40 Total: -19.16 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 5.39 Total: 7.64 kcal Atomic # 7 Polarization: 3.20 SS G_CDS: -2.32 Total: 0.88 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -3.24 Total: -19.11 kcal Atomic # 14 Polarization: 4.61 SS G_CDS: 2.07 Total: 6.68 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -1.26 Total: -1.47 kcal Total: -24.78 0.23 -24.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_4974302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.601 kcal (2) G-P(sol) polarization free energy of solvation -24.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds