Wall clock time and date at job start Sun Mar 7 2021 06:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35963 * 116.99972 * 2 1 4 4 C 1.39448 * 120.12034 * 179.97438 * 3 2 1 5 5 O 1.34776 * 133.24474 * 359.97438 * 4 3 2 6 6 C 1.34930 * 110.84474 * 179.97438 * 5 4 3 7 7 C 1.46992 * 125.13865 * 180.02562 * 6 5 4 8 8 O 1.21648 * 119.99848 * 179.97438 * 7 6 5 9 9 N 1.34776 * 119.99989 * 359.97438 * 7 6 5 10 10 C 1.46506 * 119.99797 * 180.02562 * 9 7 6 11 11 H 1.08997 * 112.85094 * 23.80475 * 10 9 7 12 12 C 1.53779 * 113.61482 * 155.00064 * 10 9 7 13 13 C 1.53781 * 87.08093 * 89.11350 * 12 10 9 14 14 H 1.09000 * 113.61842 * 270.88070 * 13 12 10 15 15 C 1.52997 * 113.61270 * 139.98052 * 13 12 10 16 16 S 1.81405 * 109.47385 * 175.00169 * 15 13 12 17 17 C 1.81401 * 103.00333 * 180.02562 * 16 15 13 18 18 C 1.53776 * 113.61196 * 252.49689 * 10 9 7 19 19 C 1.35810 * 109.72032 * 0.02562 * 6 5 4 20 20 C 1.40612 * 119.13666 * 179.97438 * 4 3 2 21 21 C 1.39773 * 120.12230 * 0.02562 * 20 4 3 22 22 C 1.50699 * 120.09583 * 179.97438 * 21 20 4 23 23 O 1.42895 * 109.47158 * 284.99856 * 22 21 20 24 24 Si 1.86300 * 109.46944 * 165.00377 * 22 21 20 25 25 C 1.36633 * 119.81043 * 0.25209 * 21 20 4 26 26 C 1.38253 * 120.12262 * 359.97438 * 3 2 1 27 27 H 1.08998 * 109.47409 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46793 * 299.99627 * 1 2 3 29 29 H 1.09003 * 109.47361 * 59.99231 * 1 2 3 30 30 H 0.96996 * 120.00153 * 359.97438 * 9 7 6 31 31 H 1.09001 * 113.61464 * 203.66296 * 12 10 9 32 32 H 1.09006 * 113.61260 * 334.48760 * 12 10 9 33 33 H 1.09001 * 109.47130 * 295.00282 * 15 13 12 34 34 H 1.09001 * 109.47552 * 55.00126 * 15 13 12 35 35 H 1.08997 * 109.46702 * 59.99612 * 17 16 15 36 36 H 1.08993 * 109.46908 * 179.97438 * 17 16 15 37 37 H 1.08998 * 109.46961 * 300.00061 * 17 16 15 38 38 H 1.09001 * 113.61588 * 25.43594 * 18 10 9 39 39 H 1.09009 * 113.61544 * 156.33474 * 18 10 9 40 40 H 1.07994 * 126.95610 * 180.02562 * 19 6 5 41 41 H 1.09000 * 109.47247 * 45.00309 * 22 21 20 42 42 H 0.96698 * 114.00355 * 300.00487 * 23 22 21 43 43 H 1.48506 * 110.00048 * 180.02562 * 24 22 21 44 44 H 1.48502 * 109.99996 * 301.31619 * 24 22 21 45 45 H 1.07998 * 119.75597 * 179.72238 * 25 21 20 46 46 H 1.08005 * 119.66429 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4386 1.2874 0.0005 5 8 4.4141 0.3573 0.0016 6 6 5.6317 0.9386 0.0011 7 6 6.9131 0.2184 0.0014 8 8 7.9595 0.8387 0.0005 9 7 6.9286 -1.1293 0.0027 10 6 8.2057 -1.8471 0.0036 11 1 9.0249 -1.2530 0.4086 12 6 8.1169 -3.2616 0.6004 13 6 7.7805 -3.7535 -0.8172 14 1 6.7140 -3.7407 -1.0423 15 6 8.4498 -5.0805 -1.1804 16 16 7.8640 -5.6278 -2.8077 17 6 8.7536 -7.1888 -3.0579 18 6 8.5352 -2.5196 -1.3395 19 6 5.4945 2.2898 0.0004 20 6 4.0554 2.5510 0.0000 21 6 3.2766 3.7116 -0.0006 22 6 3.9382 5.0656 -0.0006 23 8 4.4600 5.3408 1.3009 24 14 2.6866 6.3683 -0.4558 25 6 1.9136 3.6151 0.0047 26 6 1.2957 2.3725 -0.0005 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 6.0942 -1.6239 0.0038 31 1 9.0681 -3.6365 0.9784 32 1 7.3004 -3.3848 1.3119 33 1 9.5311 -4.9459 -1.2099 34 1 8.1974 -5.8316 -0.4320 35 1 8.4931 -7.8868 -2.2624 36 1 8.4744 -7.6156 -4.0212 37 1 9.8273 -7.0019 -3.0403 38 1 8.0556 -2.0442 -2.1951 39 1 9.6008 -2.6917 -1.4919 40 1 6.2874 3.0229 -0.0005 41 1 4.7508 5.0729 -0.7270 42 1 3.7911 5.3501 1.9991 43 1 3.3268 7.7083 -0.4600 44 1 2.1130 6.0759 -1.7940 45 1 1.3128 4.5125 0.0088 46 1 0.2173 2.3120 -0.0005 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_6672420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:38:08 Heat of formation + Delta-G solvation = -38.767277 kcal Electronic energy + Delta-G solvation = -29901.426954 eV Core-core repulsion = 25659.125269 eV Total energy + Delta-G solvation = -4242.301684 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.122 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.80453 -41.46658 -40.63245 -39.55312 -39.08374 -37.01291 -34.94794 -33.69822 -31.97428 -31.27258 -30.47045 -29.65687 -28.51961 -26.77468 -26.36117 -25.53666 -24.02209 -23.64398 -22.18696 -21.82073 -20.38649 -19.91576 -19.06864 -18.56012 -17.86543 -17.74284 -17.50295 -17.11063 -16.94653 -16.63365 -16.29113 -16.22433 -16.02281 -15.77508 -15.51595 -15.39369 -15.06545 -14.74117 -14.56653 -14.50529 -14.33559 -14.18888 -13.94740 -13.64036 -13.58205 -13.41572 -13.36841 -13.29025 -12.93093 -12.41871 -12.30529 -12.20982 -12.09649 -11.92057 -11.67853 -11.58374 -11.30239 -11.05851 -10.91245 -10.45311 -10.36961 -9.86264 -9.02895 -8.72621 -5.00719 -0.72318 0.07866 0.56089 0.71890 1.12224 1.29698 1.66100 1.67983 1.80047 1.81784 2.00137 2.12297 2.37854 3.12005 3.36157 3.39779 3.49743 3.61296 3.67063 3.67829 3.72949 3.78333 3.84922 3.94822 4.14953 4.23962 4.28822 4.31123 4.32561 4.37629 4.39414 4.42869 4.43477 4.47436 4.64922 4.72529 4.76158 4.77226 4.79441 4.84566 4.85057 4.94605 4.97882 5.02468 5.04509 5.19491 5.30341 5.43294 5.55732 6.12879 6.26040 6.73706 6.78480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.334 6.334 3 C 0.136 3.864 4 C 0.019 3.981 5 O -0.182 6.182 6 C -0.034 4.034 7 C 0.605 3.395 8 O -0.544 6.544 9 N -0.687 5.687 10 C 0.108 3.892 11 H 0.100 0.900 12 C -0.117 4.117 13 C -0.091 4.091 14 H 0.091 0.909 15 C -0.060 4.060 16 S -0.329 6.329 17 C -0.110 4.110 18 C -0.141 4.141 19 C -0.114 4.114 20 C -0.099 4.099 21 C -0.108 4.108 22 C -0.081 4.081 23 O -0.555 6.555 24 Si 0.798 3.202 25 C -0.078 4.078 26 C -0.164 4.164 27 H 0.114 0.886 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.416 0.584 31 H 0.119 0.881 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.105 0.895 40 H 0.170 0.830 41 H 0.097 0.903 42 H 0.396 0.604 43 H -0.301 1.301 44 H -0.280 1.280 45 H 0.177 0.823 46 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.216 -2.721 3.269 8.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.248 6.248 3 C 0.090 3.910 4 C -0.029 4.029 5 O -0.084 6.084 6 C -0.085 4.085 7 C 0.391 3.609 8 O -0.423 6.423 9 N -0.337 5.337 10 C 0.004 3.996 11 H 0.118 0.882 12 C -0.157 4.157 13 C -0.111 4.111 14 H 0.110 0.890 15 C -0.208 4.208 16 S -0.103 6.103 17 C -0.279 4.279 18 C -0.180 4.180 19 C -0.135 4.135 20 C -0.100 4.100 21 C -0.109 4.109 22 C -0.189 4.189 23 O -0.363 6.363 24 Si 0.702 3.298 25 C -0.095 4.095 26 C -0.182 4.182 27 H 0.132 0.868 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.253 0.747 31 H 0.137 0.863 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.123 0.877 40 H 0.187 0.813 41 H 0.114 0.886 42 H 0.246 0.754 43 H -0.229 1.229 44 H -0.207 1.207 45 H 0.194 0.806 46 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.804 -1.729 1.688 7.221 hybrid contribution 1.170 -1.182 0.245 1.680 sum -5.635 -2.910 1.933 6.630 Atomic orbital electron populations 1.23498 0.75228 1.06013 1.03284 1.86147 1.24405 1.25841 1.88446 1.18007 0.86000 0.86991 1.00015 1.19257 0.88343 0.87047 1.08217 1.84009 1.12698 1.35110 1.76550 1.21901 0.84035 0.92705 1.09811 1.16653 0.85043 0.82710 0.76507 1.90887 1.31386 1.68209 1.51798 1.45541 1.10711 1.04797 1.72650 1.22052 0.85641 0.93522 0.98432 0.88201 1.23359 1.04827 0.91890 0.95587 1.22330 0.99976 0.91779 0.97002 0.89029 1.23413 1.03220 1.00048 0.94094 1.87288 1.63712 1.30655 1.28657 1.23395 1.02693 0.95221 1.06574 1.23512 1.01970 0.95858 0.96612 1.22853 0.95540 0.94384 1.00679 1.19596 0.92233 0.92986 1.05180 1.19693 0.93814 0.93892 1.03484 1.25374 1.05874 0.98632 0.89059 1.86503 1.39687 1.93338 1.16754 0.93850 0.80287 0.73068 0.82621 1.20808 0.92389 0.98654 0.97681 1.21445 1.02011 0.89485 1.05308 0.86764 0.90299 0.90698 0.74704 0.86261 0.89394 0.88772 0.88630 0.89510 0.87835 0.89611 0.92385 0.87664 0.81283 0.88588 0.75413 1.22895 1.20693 0.80621 0.79821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.09 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.94 10.50 -93.13 -0.98 -1.92 16 3 C 0.14 0.45 6.70 22.57 0.15 0.60 16 4 C 0.02 0.16 7.35 23.14 0.17 0.33 16 5 O -0.18 -1.75 10.28 -13.44 -0.14 -1.89 16 6 C -0.03 -0.34 7.07 24.00 0.17 -0.17 16 7 C 0.60 5.98 7.80 86.54 0.67 6.66 16 8 O -0.54 -8.61 16.42 -4.18 -0.07 -8.68 16 9 N -0.69 -2.48 5.26 -443.72 -2.33 -4.81 16 10 C 0.11 0.09 4.32 45.51 0.20 0.29 16 11 H 0.10 0.35 7.46 -2.39 -0.02 0.33 16 12 C -0.12 0.56 7.39 31.12 0.23 0.79 16 13 C -0.09 0.21 3.53 -10.27 -0.04 0.18 16 14 H 0.09 -0.03 8.13 -2.39 -0.02 -0.05 16 15 C -0.06 0.16 5.78 71.98 0.42 0.57 16 16 S -0.33 -1.00 22.37 -56.49 -1.26 -2.26 16 17 C -0.11 0.25 10.76 113.37 1.22 1.47 16 18 C -0.14 -0.05 7.43 31.12 0.23 0.18 16 19 C -0.11 -1.12 10.68 23.79 0.25 -0.86 16 20 C -0.10 -0.73 6.16 -20.24 -0.12 -0.86 16 21 C -0.11 -0.18 5.26 -19.87 -0.10 -0.29 16 22 C -0.08 -0.07 2.71 71.24 0.19 0.13 16 23 O -0.55 -0.98 12.88 -148.98 -1.92 -2.90 16 24 Si 0.80 -2.84 29.93 68.60 2.05 -0.79 16 25 C -0.08 0.32 8.62 22.02 0.19 0.51 16 26 C -0.16 0.61 9.03 22.40 0.20 0.81 16 27 H 0.11 -1.04 8.14 -2.39 -0.02 -1.06 16 28 H 0.08 -0.83 7.66 -2.38 -0.02 -0.85 16 29 H 0.07 -0.74 7.66 -2.39 -0.02 -0.76 16 30 H 0.42 0.26 8.42 -92.71 -0.78 -0.52 16 31 H 0.12 -0.93 8.10 -2.39 -0.02 -0.95 16 32 H 0.09 -0.49 8.14 -2.38 -0.02 -0.51 16 33 H 0.09 -0.41 7.84 -2.39 -0.02 -0.43 16 34 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 35 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 37 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 38 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.11 -0.15 7.90 -2.38 -0.02 -0.17 16 40 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 41 H 0.10 0.36 7.96 -2.39 -0.02 0.34 16 42 H 0.40 -2.89 8.70 -74.06 -0.64 -3.54 16 43 H -0.30 -1.38 7.11 99.48 0.71 -0.67 16 44 H -0.28 -0.22 7.11 99.48 0.71 0.49 16 45 H 0.18 -2.09 5.08 -2.91 -0.01 -2.10 16 46 H 0.18 -2.08 6.26 -2.91 -0.02 -2.10 16 Total: 0.00 -24.26 398.46 0.14 -24.12 By element: Atomic # 1 Polarization: -11.87 SS G_CDS: -0.35 Total: -12.23 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 5.14 Total: 11.35 kcal Atomic # 7 Polarization: -2.48 SS G_CDS: -2.33 Total: -4.81 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -3.10 Total: -15.38 kcal Atomic # 14 Polarization: -2.84 SS G_CDS: 2.05 Total: -0.79 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -1.26 Total: -2.26 kcal Total: -24.26 0.14 -24.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_6672420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.648 kcal (2) G-P(sol) polarization free energy of solvation -24.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds