Wall clock time and date at job start Sun Mar 7 2021 06:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81406 * 102.99927 * 2 1 4 4 C 1.53003 * 109.46857 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.85017 * 314.66745 * 4 3 2 6 6 C 1.53786 * 113.61503 * 85.86363 * 4 3 2 7 7 C 1.54049 * 86.98426 * 140.01654 * 6 4 3 8 8 H 1.09005 * 113.62125 * 220.02158 * 7 6 4 9 9 N 1.46499 * 113.61109 * 89.11993 * 7 6 4 10 10 C 1.34774 * 120.00133 * 107.50629 * 9 7 6 11 11 O 1.21278 * 119.99987 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99849 * 179.97438 * 10 9 7 13 13 N 1.46505 * 109.47042 * 179.97438 * 12 10 9 14 14 C 1.36827 * 125.06139 * 265.02486 * 13 12 10 15 15 C 1.34237 * 109.93603 * 179.97438 * 14 13 12 16 16 C 1.50700 * 126.50072 * 179.97438 * 15 14 13 17 17 O 1.42908 * 109.47050 * 105.02446 * 16 15 14 18 18 Si 1.86295 * 109.47370 * 345.02580 * 16 15 14 19 19 C 1.46489 * 107.00255 * 0.02562 * 15 14 13 20 20 C 1.39583 * 134.04528 * 180.02562 * 19 15 14 21 21 C 1.36665 * 119.77044 * 179.97438 * 20 19 15 22 22 C 1.38790 * 120.52365 * 359.97438 * 21 20 19 23 23 C 1.37787 * 120.66852 * 0.02562 * 22 21 20 24 24 C 1.37686 * 125.05847 * 84.72169 * 13 12 10 25 25 C 1.53781 * 113.61337 * 183.47157 * 4 3 2 26 26 H 1.09001 * 109.46851 * 300.00309 * 1 2 3 27 27 H 1.09000 * 109.46745 * 59.99691 * 1 2 3 28 28 H 1.08989 * 109.47425 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47164 * 60.00110 * 3 2 1 30 30 H 1.08997 * 109.47235 * 299.99849 * 3 2 1 31 31 H 1.08992 * 113.61675 * 254.61398 * 6 4 3 32 32 H 1.09000 * 113.60973 * 25.51686 * 6 4 3 33 33 H 0.96999 * 119.99715 * 287.50199 * 9 7 6 34 34 H 1.08996 * 109.47701 * 300.00195 * 12 10 9 35 35 H 1.09007 * 109.47246 * 60.00423 * 12 10 9 36 36 H 1.07999 * 125.03625 * 359.96612 * 14 13 12 37 37 H 1.09002 * 109.47394 * 225.02288 * 16 15 14 38 38 H 0.96704 * 114.00024 * 179.97438 * 17 16 15 39 39 H 1.48501 * 110.00048 * 298.68237 * 18 16 15 40 40 H 1.48506 * 110.00127 * 59.99807 * 18 16 15 41 41 H 1.08004 * 120.11583 * 0.02562 * 20 19 15 42 42 H 1.07994 * 119.74028 * 180.02562 * 21 20 19 43 43 H 1.07999 * 119.66400 * 180.02562 * 22 21 20 44 44 H 1.07997 * 120.10956 * 179.97438 * 23 22 21 45 45 H 1.08999 * 113.61567 * 334.48261 * 25 4 3 46 46 H 1.09000 * 113.61379 * 105.30384 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.2422 1.2861 0.7153 6 6 4.3665 1.9082 -1.4045 7 6 5.2917 3.0451 -0.9305 8 1 5.4595 3.8146 -1.6841 9 7 6.5328 2.5724 -0.3121 10 6 7.7029 2.6960 -0.9695 11 8 7.7282 3.1982 -2.0732 12 6 8.9796 2.2102 -0.3332 13 7 10.1023 2.4556 -1.2419 14 6 10.6127 1.5434 -2.1248 15 6 11.6341 2.0871 -2.8054 16 6 12.4628 1.4129 -3.8683 17 8 12.0838 1.9089 -5.1538 18 14 12.1780 -0.4270 -3.8039 19 6 11.7912 3.4595 -2.3180 20 6 12.6604 4.5064 -2.6295 21 6 12.5452 5.7012 -1.9762 22 6 11.5700 5.8827 -1.0054 23 6 10.7016 4.8629 -0.6824 24 6 10.7971 3.6403 -1.3387 25 6 4.1959 3.4069 0.0860 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0275 -0.0005 29 1 1.8031 2.2372 0.8900 30 1 1.8032 2.2372 -0.8900 31 1 4.8923 0.9800 -1.6279 32 1 3.6779 2.2067 -2.1949 33 1 6.5125 2.1705 0.5704 34 1 9.1455 2.7444 0.6024 35 1 8.9020 1.1416 -0.1325 36 1 10.2479 0.5353 -2.2550 37 1 13.5181 1.6235 -3.6943 38 1 12.5778 1.5181 -5.8875 39 1 12.5981 -0.9601 -2.4830 40 1 10.7429 -0.7275 -4.0396 41 1 13.4209 4.3728 -3.3846 42 1 13.2177 6.5109 -2.2178 43 1 11.4911 6.8328 -0.4981 44 1 9.9464 5.0138 0.0748 45 1 3.4608 4.1143 -0.2977 46 1 4.5827 3.6880 1.0655 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535148_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:38:25 Heat of formation + Delta-G solvation = 31.301379 kcal Electronic energy + Delta-G solvation = -27587.366482 eV Core-core repulsion = 23764.504057 eV Total energy + Delta-G solvation = -3822.862425 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.48950 -41.30116 -39.53200 -37.92639 -37.46499 -34.83219 -34.07625 -31.52872 -30.72766 -30.16859 -29.83260 -28.80036 -26.90826 -25.74599 -24.13690 -23.56415 -22.69852 -21.81116 -20.49010 -20.38546 -18.70683 -18.19882 -18.09445 -17.66434 -17.42167 -16.87048 -16.45128 -16.34515 -16.17707 -15.71792 -15.50903 -15.38326 -15.16007 -14.87909 -14.72243 -14.64114 -14.50439 -14.32611 -14.08704 -14.01568 -13.81962 -13.49745 -13.46862 -13.43765 -12.92934 -12.62261 -12.44470 -12.35196 -12.26876 -11.88992 -11.68507 -11.63238 -11.39710 -11.10672 -10.99235 -10.42060 -10.22955 -10.08371 -9.02132 -8.71958 -8.53162 -4.95449 0.27287 0.61126 0.79779 1.36237 1.37709 1.38591 1.54381 1.67431 1.76904 2.04290 2.06449 3.10242 3.24792 3.35510 3.43482 3.45775 3.55167 3.64333 3.70233 3.76710 3.82354 3.86162 4.07760 4.10715 4.10840 4.14701 4.21702 4.32375 4.35662 4.37256 4.46488 4.53527 4.56277 4.66424 4.69401 4.71019 4.78724 4.85431 4.89313 4.90864 4.97996 4.99615 5.25720 5.40733 5.64814 5.80415 5.85930 5.89663 6.13972 6.30096 6.37094 6.84690 7.00455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.265 6.265 3 C -0.076 4.076 4 C -0.095 4.095 5 H 0.098 0.902 6 C -0.142 4.142 7 C 0.120 3.880 8 H 0.106 0.894 9 N -0.711 5.711 10 C 0.493 3.507 11 O -0.508 6.508 12 C 0.092 3.908 13 N -0.466 5.466 14 C 0.064 3.936 15 C -0.151 4.151 16 C -0.033 4.033 17 O -0.545 6.545 18 Si 0.682 3.318 19 C -0.085 4.085 20 C -0.063 4.063 21 C -0.145 4.145 22 C -0.096 4.096 23 C -0.128 4.128 24 C 0.110 3.890 25 C -0.134 4.134 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.402 0.598 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.162 0.838 37 H 0.070 0.930 38 H 0.377 0.623 39 H -0.256 1.256 40 H -0.254 1.254 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.115 0.885 45 H 0.099 0.901 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.911 -1.684 3.406 3.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.039 6.039 3 C -0.224 4.224 4 C -0.114 4.114 5 H 0.117 0.883 6 C -0.180 4.180 7 C 0.014 3.986 8 H 0.124 0.876 9 N -0.364 5.364 10 C 0.277 3.723 11 O -0.381 6.381 12 C -0.034 4.034 13 N -0.149 5.149 14 C -0.060 4.060 15 C -0.158 4.158 16 C -0.144 4.144 17 O -0.351 6.351 18 Si 0.583 3.417 19 C -0.089 4.089 20 C -0.082 4.082 21 C -0.164 4.164 22 C -0.115 4.115 23 C -0.148 4.148 24 C 0.005 3.995 25 C -0.174 4.174 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.121 0.879 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.237 0.763 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.179 0.821 37 H 0.088 0.912 38 H 0.224 0.776 39 H -0.180 1.180 40 H -0.179 1.179 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.133 0.867 45 H 0.118 0.882 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.322 -2.592 3.559 4.597 hybrid contribution -1.272 1.206 0.801 1.927 sum -2.594 -1.386 4.360 5.259 Atomic orbital electron populations 1.23395 0.93906 1.06773 1.04985 1.87016 1.07673 1.11183 1.98055 1.23425 0.99260 0.94616 1.05079 1.22385 0.92675 0.97414 0.98964 0.88348 1.23539 0.98453 0.99599 0.96458 1.21884 0.82716 0.97516 0.96479 0.87585 1.45606 1.06170 1.63382 1.21268 1.21001 0.85187 0.79565 0.86564 1.90831 1.86221 1.41953 1.19124 1.21587 0.83921 1.04561 0.93379 1.43158 1.27179 1.10354 1.34214 1.21405 0.95942 0.95012 0.93660 1.19532 1.00815 0.93871 1.01591 1.23937 0.98639 1.08233 0.83575 1.86577 1.65213 1.68866 1.14408 0.95294 0.83751 0.76409 0.86242 1.18929 0.97875 0.93915 0.98228 1.20282 0.97743 0.91586 0.98546 1.20671 1.00009 0.97557 0.98213 1.20828 0.94925 0.98002 0.97745 1.19952 1.01899 0.90885 1.02071 1.18172 0.94343 0.87601 0.99363 1.23387 0.97721 0.96226 1.00070 0.90430 0.90409 0.87935 0.89808 0.89796 0.90658 0.88732 0.76309 0.86219 0.86056 0.82077 0.91238 0.77567 1.18049 1.17872 0.85872 0.85800 0.85632 0.86674 0.88246 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.16 10.76 101.05 1.09 1.25 16 2 S -0.27 -0.17 22.38 -107.50 -2.41 -2.57 16 3 C -0.08 0.12 5.76 37.16 0.21 0.34 16 4 C -0.10 0.21 3.52 -89.80 -0.32 -0.11 16 5 H 0.10 -0.21 8.14 -51.93 -0.42 -0.63 16 6 C -0.14 0.12 7.45 -25.77 -0.19 -0.07 16 7 C 0.12 -0.10 4.33 -66.98 -0.29 -0.39 16 8 H 0.11 0.15 7.47 -51.93 -0.39 -0.23 16 9 N -0.71 1.10 5.26 -52.88 -0.28 0.83 16 10 C 0.49 0.75 7.90 -10.99 -0.09 0.66 16 11 O -0.51 -3.50 16.02 5.56 0.09 -3.41 16 12 C 0.09 -0.07 6.48 -5.19 -0.03 -0.10 16 13 N -0.47 -1.59 2.27 -115.70 -0.26 -1.85 16 14 C 0.06 0.26 9.89 -16.73 -0.17 0.10 16 15 C -0.15 -0.74 5.61 -102.71 -0.58 -1.32 16 16 C -0.03 -0.06 3.05 36.01 0.11 0.04 16 17 O -0.55 -1.44 12.86 -35.23 -0.45 -1.89 16 18 Si 0.68 -0.05 30.79 -169.99 -5.23 -5.29 16 19 C -0.09 -0.49 6.35 -105.14 -0.67 -1.16 16 20 C -0.06 -0.28 10.05 -39.65 -0.40 -0.67 16 21 C -0.15 -0.45 9.97 -39.95 -0.40 -0.85 16 22 C -0.10 -0.27 10.01 -39.54 -0.40 -0.67 16 23 C -0.13 -0.45 10.00 -39.43 -0.39 -0.84 16 24 C 0.11 0.55 6.80 -83.99 -0.57 -0.02 16 25 C -0.13 0.39 7.39 -25.92 -0.19 0.20 16 26 H 0.08 -0.16 8.14 -51.92 -0.42 -0.58 16 27 H 0.08 -0.15 8.14 -51.92 -0.42 -0.57 16 28 H 0.10 -0.18 8.14 -51.93 -0.42 -0.60 16 29 H 0.08 -0.18 8.14 -51.92 -0.42 -0.61 16 30 H 0.08 -0.16 7.88 -51.93 -0.41 -0.57 16 31 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 32 H 0.09 -0.08 7.92 -51.93 -0.41 -0.49 16 33 H 0.40 -1.84 8.70 -40.82 -0.36 -2.19 16 34 H 0.12 -0.41 8.14 -51.93 -0.42 -0.83 16 35 H 0.12 -0.45 8.12 -51.93 -0.42 -0.88 16 36 H 0.16 0.36 6.30 -52.49 -0.33 0.02 16 37 H 0.07 0.03 7.96 -51.93 -0.41 -0.38 16 38 H 0.38 -1.08 8.74 45.56 0.40 -0.68 16 39 H -0.26 -0.52 7.11 56.52 0.40 -0.12 16 40 H -0.25 -0.73 7.04 56.52 0.40 -0.33 16 41 H 0.12 0.35 8.06 -52.48 -0.42 -0.07 16 42 H 0.12 0.11 8.06 -52.49 -0.42 -0.31 16 43 H 0.13 0.05 8.06 -52.49 -0.42 -0.37 16 44 H 0.12 0.16 8.06 -52.49 -0.42 -0.26 16 45 H 0.10 -0.33 8.10 -51.93 -0.42 -0.75 16 46 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 LS Contribution 397.58 15.07 5.99 5.99 Total: 0.00 -11.50 397.58 -12.84 -24.34 By element: Atomic # 1 Polarization: -5.50 SS G_CDS: -7.03 Total: -12.52 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -3.27 Total: -3.62 kcal Atomic # 7 Polarization: -0.48 SS G_CDS: -0.54 Total: -1.02 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.36 Total: -5.31 kcal Atomic # 14 Polarization: -0.05 SS G_CDS: -5.23 Total: -5.29 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -2.41 Total: -2.57 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -11.50 -12.84 -24.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.642 kcal (2) G-P(sol) polarization free energy of solvation -11.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds