Wall clock time and date at job start Sun Mar 7 2021 06:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81406 * 102.99927 * 2 1 4 4 C 1.53003 * 109.46857 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.85017 * 314.66745 * 4 3 2 6 6 C 1.53786 * 113.61503 * 85.86363 * 4 3 2 7 7 C 1.54049 * 86.98426 * 140.01654 * 6 4 3 8 8 H 1.09005 * 113.62125 * 220.02158 * 7 6 4 9 9 N 1.46499 * 113.61109 * 89.11993 * 7 6 4 10 10 C 1.34774 * 120.00133 * 107.50629 * 9 7 6 11 11 O 1.21278 * 119.99987 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99849 * 179.97438 * 10 9 7 13 13 N 1.46505 * 109.47042 * 179.97438 * 12 10 9 14 14 C 1.36827 * 125.06139 * 265.02486 * 13 12 10 15 15 C 1.34237 * 109.93603 * 179.97438 * 14 13 12 16 16 C 1.50700 * 126.50072 * 179.97438 * 15 14 13 17 17 O 1.42908 * 109.47050 * 105.02446 * 16 15 14 18 18 Si 1.86295 * 109.47370 * 345.02580 * 16 15 14 19 19 C 1.46489 * 107.00255 * 0.02562 * 15 14 13 20 20 C 1.39583 * 134.04528 * 180.02562 * 19 15 14 21 21 C 1.36665 * 119.77044 * 179.97438 * 20 19 15 22 22 C 1.38790 * 120.52365 * 359.97438 * 21 20 19 23 23 C 1.37787 * 120.66852 * 0.02562 * 22 21 20 24 24 C 1.37686 * 125.05847 * 84.72169 * 13 12 10 25 25 C 1.53781 * 113.61337 * 183.47157 * 4 3 2 26 26 H 1.09001 * 109.46851 * 300.00309 * 1 2 3 27 27 H 1.09000 * 109.46745 * 59.99691 * 1 2 3 28 28 H 1.08989 * 109.47425 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47164 * 60.00110 * 3 2 1 30 30 H 1.08997 * 109.47235 * 299.99849 * 3 2 1 31 31 H 1.08992 * 113.61675 * 254.61398 * 6 4 3 32 32 H 1.09000 * 113.60973 * 25.51686 * 6 4 3 33 33 H 0.96999 * 119.99715 * 287.50199 * 9 7 6 34 34 H 1.08996 * 109.47701 * 300.00195 * 12 10 9 35 35 H 1.09007 * 109.47246 * 60.00423 * 12 10 9 36 36 H 1.07999 * 125.03625 * 359.96612 * 14 13 12 37 37 H 1.09002 * 109.47394 * 225.02288 * 16 15 14 38 38 H 0.96704 * 114.00024 * 179.97438 * 17 16 15 39 39 H 1.48501 * 110.00048 * 298.68237 * 18 16 15 40 40 H 1.48506 * 110.00127 * 59.99807 * 18 16 15 41 41 H 1.08004 * 120.11583 * 0.02562 * 20 19 15 42 42 H 1.07994 * 119.74028 * 180.02562 * 21 20 19 43 43 H 1.07999 * 119.66400 * 180.02562 * 22 21 20 44 44 H 1.07997 * 120.10956 * 179.97438 * 23 22 21 45 45 H 1.08999 * 113.61567 * 334.48261 * 25 4 3 46 46 H 1.09000 * 113.61379 * 105.30384 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.2422 1.2861 0.7153 6 6 4.3665 1.9082 -1.4045 7 6 5.2917 3.0451 -0.9305 8 1 5.4595 3.8146 -1.6841 9 7 6.5328 2.5724 -0.3121 10 6 7.7029 2.6960 -0.9695 11 8 7.7282 3.1982 -2.0732 12 6 8.9796 2.2102 -0.3332 13 7 10.1023 2.4556 -1.2419 14 6 10.6127 1.5434 -2.1248 15 6 11.6341 2.0871 -2.8054 16 6 12.4628 1.4129 -3.8683 17 8 12.0838 1.9089 -5.1538 18 14 12.1780 -0.4270 -3.8039 19 6 11.7912 3.4595 -2.3180 20 6 12.6604 4.5064 -2.6295 21 6 12.5452 5.7012 -1.9762 22 6 11.5700 5.8827 -1.0054 23 6 10.7016 4.8629 -0.6824 24 6 10.7971 3.6403 -1.3387 25 6 4.1959 3.4069 0.0860 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0275 -0.0005 29 1 1.8031 2.2372 0.8900 30 1 1.8032 2.2372 -0.8900 31 1 4.8923 0.9800 -1.6279 32 1 3.6779 2.2067 -2.1949 33 1 6.5125 2.1705 0.5704 34 1 9.1455 2.7444 0.6024 35 1 8.9020 1.1416 -0.1325 36 1 10.2479 0.5353 -2.2550 37 1 13.5181 1.6235 -3.6943 38 1 12.5778 1.5181 -5.8875 39 1 12.5981 -0.9601 -2.4830 40 1 10.7429 -0.7275 -4.0396 41 1 13.4209 4.3728 -3.3846 42 1 13.2177 6.5109 -2.2178 43 1 11.4911 6.8328 -0.4981 44 1 9.9464 5.0138 0.0748 45 1 3.4608 4.1143 -0.2977 46 1 4.5827 3.6880 1.0655 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:38:24 Heat of formation + Delta-G solvation = 31.843210 kcal Electronic energy + Delta-G solvation = -27587.342987 eV Core-core repulsion = 23764.504057 eV Total energy + Delta-G solvation = -3822.838929 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.65983 -41.32872 -39.59613 -38.10524 -37.60859 -34.91197 -34.20472 -31.65152 -30.70817 -30.37008 -29.74087 -28.86160 -26.79598 -25.87390 -24.16870 -23.70240 -22.84544 -21.90201 -20.64367 -20.37371 -18.75919 -18.32628 -18.22629 -17.80908 -17.40296 -16.87442 -16.55262 -16.49146 -16.18819 -15.73684 -15.55762 -15.48161 -15.13285 -14.96795 -14.86973 -14.81537 -14.53991 -14.33990 -14.19278 -13.96742 -13.73099 -13.63577 -13.41313 -13.37578 -12.89679 -12.76777 -12.65605 -12.52457 -12.17661 -12.05845 -11.81533 -11.59464 -11.32479 -11.28816 -10.93837 -10.64991 -10.24899 -10.18362 -9.26612 -8.74608 -8.74411 -4.97067 0.03480 0.56352 0.69296 1.22740 1.29990 1.32954 1.56198 1.63078 1.69097 1.97804 2.04020 2.87433 3.35848 3.42822 3.46986 3.48518 3.56612 3.66035 3.67388 3.73772 3.81346 3.96388 3.98698 4.17683 4.21856 4.22277 4.26125 4.28629 4.33785 4.36036 4.45753 4.51420 4.60902 4.65857 4.69600 4.70335 4.74930 4.82928 4.83303 4.93134 4.97808 5.06745 5.08527 5.43854 5.46469 5.58038 5.64809 5.65675 6.02992 6.14692 6.33869 6.98830 7.00775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.323 6.323 3 C -0.063 4.063 4 C -0.085 4.085 5 H 0.102 0.898 6 C -0.144 4.144 7 C 0.113 3.887 8 H 0.079 0.921 9 N -0.693 5.693 10 C 0.493 3.507 11 O -0.571 6.571 12 C 0.087 3.913 13 N -0.468 5.468 14 C 0.051 3.949 15 C -0.180 4.180 16 C -0.051 4.051 17 O -0.571 6.571 18 Si 0.788 3.212 19 C -0.120 4.120 20 C -0.082 4.082 21 C -0.151 4.151 22 C -0.101 4.101 23 C -0.137 4.137 24 C 0.090 3.910 25 C -0.117 4.117 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.420 0.580 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.173 0.827 37 H 0.081 0.919 38 H 0.398 0.602 39 H -0.282 1.282 40 H -0.296 1.296 41 H 0.128 0.872 42 H 0.144 0.856 43 H 0.151 0.849 44 H 0.134 0.866 45 H 0.107 0.893 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.320 -1.522 4.985 5.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.098 6.098 3 C -0.211 4.211 4 C -0.105 4.105 5 H 0.120 0.880 6 C -0.182 4.182 7 C 0.007 3.993 8 H 0.098 0.902 9 N -0.346 5.346 10 C 0.279 3.721 11 O -0.449 6.449 12 C -0.038 4.038 13 N -0.150 5.150 14 C -0.074 4.074 15 C -0.187 4.187 16 C -0.160 4.160 17 O -0.380 6.380 18 Si 0.692 3.308 19 C -0.124 4.124 20 C -0.100 4.100 21 C -0.170 4.170 22 C -0.120 4.120 23 C -0.157 4.157 24 C -0.015 4.015 25 C -0.156 4.156 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.122 0.878 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.258 0.742 34 H 0.169 0.831 35 H 0.172 0.828 36 H 0.190 0.810 37 H 0.099 0.901 38 H 0.249 0.751 39 H -0.208 1.208 40 H -0.224 1.224 41 H 0.146 0.854 42 H 0.162 0.838 43 H 0.169 0.831 44 H 0.152 0.848 45 H 0.125 0.875 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.734 -2.433 5.170 5.971 hybrid contribution -1.215 1.191 0.303 1.728 sum -2.948 -1.242 5.473 6.340 Atomic orbital electron populations 1.23404 0.91727 1.07177 1.05739 1.87198 1.10302 1.14082 1.98187 1.23431 0.99428 0.92443 1.05803 1.22321 0.92412 0.97983 0.97739 0.87973 1.23523 0.98512 0.98699 0.97513 1.21885 0.83365 0.97027 0.97065 0.90241 1.45471 1.05248 1.62231 1.21640 1.21413 0.86414 0.78515 0.85788 1.90810 1.87124 1.45049 1.21879 1.21978 0.81499 1.06980 0.93296 1.43370 1.27670 1.09674 1.34331 1.21702 0.96032 0.95727 0.93978 1.20055 1.01807 0.94168 1.02672 1.24321 0.98890 1.09972 0.82793 1.86516 1.66199 1.69851 1.15438 0.94168 0.80137 0.72854 0.83637 1.19357 0.98931 0.94816 0.99271 1.20501 0.98154 0.92090 0.99272 1.20988 1.00387 0.97636 0.97960 1.21202 0.94401 0.98875 0.97561 1.20273 1.02466 0.90527 1.02428 1.18503 0.94717 0.88592 0.99716 1.23317 0.96523 0.95756 1.00038 0.89460 0.89823 0.87770 0.88584 0.89462 0.92303 0.89060 0.74181 0.83122 0.82838 0.80996 0.90125 0.75107 1.20837 1.22372 0.85375 0.83776 0.83141 0.84787 0.87465 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.35 10.76 113.37 1.22 1.57 16 2 S -0.32 -0.45 22.38 -56.49 -1.26 -1.71 16 3 C -0.06 0.25 5.76 71.98 0.41 0.67 16 4 C -0.09 0.43 3.52 -10.26 -0.04 0.39 16 5 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 6 C -0.14 0.13 7.45 31.21 0.23 0.36 16 7 C 0.11 -0.13 4.33 45.61 0.20 0.07 16 8 H 0.08 0.38 7.47 -2.38 -0.02 0.37 16 9 N -0.69 2.27 5.26 -439.60 -2.31 -0.04 16 10 C 0.49 1.79 7.90 87.66 0.69 2.49 16 11 O -0.57 -9.13 16.02 -3.02 -0.05 -9.17 16 12 C 0.09 -0.17 6.48 85.63 0.56 0.39 16 13 N -0.47 -3.63 2.27 -519.98 -1.18 -4.81 16 14 C 0.05 0.49 9.89 83.00 0.82 1.31 16 15 C -0.18 -2.10 5.61 -18.63 -0.10 -2.21 16 16 C -0.05 -0.26 3.05 71.24 0.22 -0.05 16 17 O -0.57 -3.78 12.86 -148.98 -1.92 -5.69 16 18 Si 0.79 0.25 30.79 68.60 2.11 2.36 16 19 C -0.12 -1.61 6.35 -20.20 -0.13 -1.74 16 20 C -0.08 -0.85 10.05 22.23 0.22 -0.63 16 21 C -0.15 -1.03 9.97 22.03 0.22 -0.81 16 22 C -0.10 -0.57 10.01 22.30 0.22 -0.35 16 23 C -0.14 -1.01 10.00 22.37 0.22 -0.79 16 24 C 0.09 1.01 6.80 39.03 0.27 1.28 16 25 C -0.12 0.81 7.39 31.12 0.23 1.04 16 26 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 28 H 0.10 -0.37 8.14 -2.40 -0.02 -0.39 16 29 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H 0.09 -0.39 7.88 -2.39 -0.02 -0.41 16 31 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.09 -0.03 7.92 -2.39 -0.02 -0.05 16 33 H 0.42 -4.43 8.70 -92.71 -0.81 -5.23 16 34 H 0.15 -1.27 8.14 -2.39 -0.02 -1.29 16 35 H 0.15 -1.35 8.12 -2.38 -0.02 -1.37 16 36 H 0.17 1.00 6.30 -2.91 -0.02 0.98 16 37 H 0.08 0.15 7.96 -2.39 -0.02 0.13 16 38 H 0.40 -2.03 8.74 -74.05 -0.65 -2.67 16 39 H -0.28 -1.23 7.11 99.48 0.71 -0.52 16 40 H -0.30 -2.10 7.04 99.48 0.70 -1.40 16 41 H 0.13 0.98 8.06 -2.91 -0.02 0.96 16 42 H 0.14 0.24 8.06 -2.91 -0.02 0.21 16 43 H 0.15 -0.04 8.06 -2.91 -0.02 -0.06 16 44 H 0.13 0.30 8.06 -2.91 -0.02 0.28 16 45 H 0.11 -0.85 8.10 -2.39 -0.02 -0.87 16 46 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 Total: 0.00 -30.64 397.58 0.43 -30.21 By element: Atomic # 1 Polarization: -13.71 SS G_CDS: -0.43 Total: -14.13 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 5.47 Total: 2.99 kcal Atomic # 7 Polarization: -1.35 SS G_CDS: -3.49 Total: -4.85 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -1.96 Total: -14.87 kcal Atomic # 14 Polarization: 0.25 SS G_CDS: 2.11 Total: 2.36 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -1.26 Total: -1.71 kcal Total: -30.64 0.43 -30.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.051 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds