Wall clock time and date at job start Sun Mar 7 2021 06:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81397 * 102.99842 * 2 1 4 4 C 1.53003 * 109.47000 * 179.97438 * 3 2 1 5 5 H 1.09004 * 112.85164 * 316.19108 * 4 3 2 6 6 C 1.53778 * 113.61726 * 87.50415 * 4 3 2 7 7 C 1.53778 * 87.08449 * 139.98071 * 6 4 3 8 8 H 1.08993 * 113.61229 * 220.02023 * 7 6 4 9 9 N 1.46501 * 113.61560 * 89.11214 * 7 6 4 10 10 C 1.34781 * 119.99552 * 107.49938 * 9 7 6 11 11 O 1.21623 * 120.00042 * 0.02562 * 10 9 7 12 12 C 1.47258 * 119.99673 * 179.97438 * 10 9 7 13 13 C 1.36768 * 126.94080 * 180.02562 * 12 10 9 14 14 C 1.50698 * 125.80375 * 0.02562 * 13 12 10 15 15 N 1.34661 * 108.39921 * 180.02562 * 13 12 10 16 16 C 1.36459 * 110.29689 * 0.02562 * 15 13 12 17 17 C 1.50692 * 125.57283 * 180.02562 * 16 15 13 18 18 O 1.42901 * 109.46987 * 245.02255 * 17 16 15 19 19 Si 1.86302 * 109.47282 * 5.02084 * 17 16 15 20 20 C 1.34484 * 108.85145 * 359.70707 * 16 15 13 21 21 C 1.53784 * 87.08081 * 334.56700 * 7 6 4 22 22 H 1.09002 * 109.46939 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47190 * 300.00079 * 1 2 3 24 24 H 1.09007 * 109.46669 * 60.00146 * 1 2 3 25 25 H 1.08996 * 109.47327 * 59.99982 * 3 2 1 26 26 H 1.09005 * 109.47456 * 299.99514 * 3 2 1 27 27 H 1.08999 * 113.61111 * 254.53134 * 6 4 3 28 28 H 1.09004 * 113.61682 * 25.42530 * 6 4 3 29 29 H 0.96998 * 120.00259 * 287.50678 * 9 7 6 30 30 H 1.09000 * 109.46820 * 90.00277 * 14 13 12 31 31 H 1.09002 * 109.47232 * 210.00247 * 14 13 12 32 32 H 1.09003 * 109.47247 * 330.00298 * 14 13 12 33 33 H 0.96997 * 124.85485 * 179.97438 * 15 13 12 34 34 H 1.08998 * 109.47258 * 125.01713 * 17 16 15 35 35 H 0.96700 * 114.00320 * 60.00047 * 18 17 16 36 36 H 1.48502 * 110.00084 * 58.67841 * 19 17 16 37 37 H 1.48496 * 110.00073 * 180.02562 * 19 17 16 38 38 H 1.08000 * 126.83418 * 180.26354 * 20 16 15 39 39 H 1.09004 * 113.61451 * 270.88641 * 21 7 6 40 40 H 1.08994 * 113.61477 * 139.97943 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.2443 1.2675 0.6963 6 6 4.3620 1.9483 -1.4067 7 6 5.2876 3.0701 -0.9071 8 1 5.4519 3.8595 -1.6404 9 7 6.5314 2.5811 -0.3070 10 6 7.6985 2.7225 -0.9660 11 8 7.7192 3.2565 -2.0586 12 6 8.9489 2.2316 -0.3626 13 6 10.2041 2.3008 -0.9013 14 6 10.5583 2.9022 -2.2369 15 7 11.0697 1.7401 -0.0355 16 6 10.4097 1.2971 1.0737 17 6 11.0451 0.6160 2.2583 18 8 10.5678 -0.7279 2.3475 19 14 12.8963 0.6049 2.0489 20 6 9.1005 1.5739 0.9398 21 6 4.1962 3.4042 0.1235 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.8031 2.2371 0.8899 26 1 1.8032 2.2372 -0.8901 27 1 4.8882 1.0273 -1.6575 28 1 3.6704 2.2675 -2.1865 29 1 6.5149 2.1556 0.5645 30 1 10.7861 3.9605 -2.1098 31 1 11.4288 2.3898 -2.6468 32 1 9.7163 2.7913 -2.9202 33 1 12.0257 1.6617 -0.1798 34 1 10.7858 1.1550 3.1694 35 1 10.7637 -1.2675 1.5693 36 1 13.4016 1.9956 1.9228 37 1 13.5348 -0.0647 3.2105 38 1 8.3163 1.3533 1.6488 39 1 3.4592 4.1215 -0.2378 40 1 4.5885 3.6585 1.1081 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535148_9865296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:38:28 Heat of formation + Delta-G solvation = -3.540684 kcal Electronic energy + Delta-G solvation = -21567.670385 eV Core-core repulsion = 18283.513135 eV Total energy + Delta-G solvation = -3284.157250 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.48481 -40.93452 -39.01512 -37.79955 -34.49587 -32.79910 -32.17098 -30.50155 -29.67399 -28.93060 -26.71161 -25.76726 -24.23796 -23.00931 -21.59493 -20.65044 -20.11994 -18.72174 -17.79999 -17.31155 -16.96801 -16.73174 -16.55222 -16.00904 -15.87875 -15.48192 -15.33089 -14.99364 -14.80644 -14.58630 -14.48202 -14.25072 -14.13310 -13.96254 -13.77584 -13.55459 -13.39451 -13.31807 -12.78463 -12.70796 -12.59388 -12.26319 -12.07335 -11.48579 -11.19284 -10.86725 -10.81707 -10.49564 -9.98865 -9.78092 -9.14349 -8.60463 -5.33930 0.72789 0.79064 1.01144 1.21815 1.38381 1.65932 1.72604 1.98091 2.43142 2.66763 3.29191 3.45465 3.55256 3.61721 3.72778 3.83474 3.86255 4.13350 4.19466 4.20214 4.20722 4.27458 4.34282 4.38864 4.49364 4.51781 4.70162 4.71038 4.74078 4.76278 4.77677 4.87962 5.01446 5.08586 5.10038 5.18729 5.30429 5.69411 5.74930 5.87596 6.32151 6.42734 6.73242 7.50382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.264 6.264 3 C -0.075 4.075 4 C -0.096 4.096 5 H 0.098 0.902 6 C -0.143 4.143 7 C 0.123 3.877 8 H 0.106 0.894 9 N -0.710 5.710 10 C 0.597 3.403 11 O -0.547 6.547 12 C -0.241 4.241 13 C 0.125 3.875 14 C -0.100 4.100 15 N -0.545 5.545 16 C -0.029 4.029 17 C -0.033 4.033 18 O -0.534 6.534 19 Si 0.671 3.329 20 C -0.128 4.128 21 C -0.137 4.137 22 H 0.101 0.899 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.401 0.599 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.413 0.587 34 H 0.126 0.874 35 H 0.381 0.619 36 H -0.251 1.251 37 H -0.244 1.244 38 H 0.146 0.854 39 H 0.097 0.903 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.098 -0.412 0.258 1.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.038 6.038 3 C -0.223 4.223 4 C -0.115 4.115 5 H 0.117 0.883 6 C -0.181 4.181 7 C 0.017 3.983 8 H 0.124 0.876 9 N -0.361 5.361 10 C 0.386 3.614 11 O -0.426 6.426 12 C -0.251 4.251 13 C 0.006 3.994 14 C -0.157 4.157 15 N -0.144 5.144 16 C -0.137 4.137 17 C -0.145 4.145 18 O -0.339 6.339 19 Si 0.572 3.428 20 C -0.152 4.152 21 C -0.177 4.177 22 H 0.120 0.880 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.235 0.765 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.252 0.748 34 H 0.143 0.857 35 H 0.228 0.772 36 H -0.176 1.176 37 H -0.167 1.167 38 H 0.164 0.836 39 H 0.116 0.884 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.472 -0.485 0.419 2.554 hybrid contribution -1.090 0.954 0.797 1.653 sum 1.383 0.469 1.216 1.900 Atomic orbital electron populations 1.23392 0.94170 1.06680 1.04900 1.87047 1.07365 1.11360 1.98043 1.23434 0.99459 0.94446 1.04947 1.22383 0.92428 0.97554 0.99130 0.88342 1.23502 0.98537 0.99964 0.96143 1.21747 0.82932 0.97311 0.96272 0.87642 1.45420 1.06012 1.62077 1.22541 1.17301 0.82428 0.77557 0.84085 1.90750 1.86849 1.44377 1.20597 1.20078 0.92477 1.14386 0.98166 1.20404 0.88588 0.97229 0.93159 1.20659 1.03720 1.00481 0.90832 1.41708 1.09797 1.47554 1.15378 1.20523 0.93249 1.08446 0.91500 1.24419 1.09308 0.84609 0.96168 1.86551 1.82407 1.20048 1.44862 0.95451 0.74641 0.83380 0.89321 1.21795 0.94937 1.02069 0.96426 1.23404 0.97943 0.96151 1.00155 0.88013 0.90511 0.90469 0.89926 0.89853 0.90590 0.88954 0.76469 0.90102 0.91379 0.87719 0.74756 0.85713 0.77181 1.17605 1.16747 0.83626 0.88447 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.10 10.76 101.05 1.09 1.19 16 2 S -0.26 -0.36 22.37 -107.50 -2.40 -2.77 16 3 C -0.07 0.06 5.78 37.16 0.21 0.27 16 4 C -0.10 0.09 3.53 -89.80 -0.32 -0.22 16 5 H 0.10 -0.05 8.13 -51.93 -0.42 -0.47 16 6 C -0.14 -0.01 7.43 -25.92 -0.19 -0.20 16 7 C 0.12 0.04 4.32 -67.12 -0.29 -0.25 16 8 H 0.11 0.20 7.46 -51.93 -0.39 -0.19 16 9 N -0.71 -0.61 5.26 -54.14 -0.28 -0.90 16 10 C 0.60 2.05 7.81 -12.59 -0.10 1.95 16 11 O -0.55 -3.42 14.41 5.26 0.08 -3.35 16 12 C -0.24 -0.52 6.29 -103.35 -0.65 -1.17 16 13 C 0.12 0.11 7.17 -81.88 -0.59 -0.47 16 14 C -0.10 0.02 9.88 36.00 0.36 0.37 16 15 N -0.54 0.66 5.41 -5.42 -0.03 0.63 16 16 C -0.03 0.01 6.09 -81.86 -0.50 -0.49 16 17 C -0.03 0.05 2.98 36.00 0.11 0.16 16 18 O -0.53 0.45 12.88 -35.23 -0.45 -0.01 16 19 Si 0.67 -1.77 30.96 -169.99 -5.26 -7.03 16 20 C -0.13 -0.09 10.45 -37.50 -0.39 -0.48 16 21 C -0.14 0.23 7.39 -25.91 -0.19 0.04 16 22 H 0.10 -0.12 8.14 -51.92 -0.42 -0.55 16 23 H 0.08 -0.11 8.14 -51.93 -0.42 -0.54 16 24 H 0.08 -0.11 8.14 -51.92 -0.42 -0.53 16 25 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 26 H 0.08 -0.10 7.85 -51.92 -0.41 -0.51 16 27 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.09 -0.03 7.90 -51.93 -0.41 -0.44 16 29 H 0.40 -0.37 7.82 -40.82 -0.32 -0.69 16 30 H 0.08 -0.03 8.14 -51.93 -0.42 -0.46 16 31 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 32 H 0.10 0.19 6.47 -51.93 -0.34 -0.15 16 33 H 0.41 -1.60 6.72 -40.82 -0.27 -1.88 16 34 H 0.13 -0.16 7.96 -51.93 -0.41 -0.57 16 35 H 0.38 -1.69 8.70 45.56 0.40 -1.29 16 36 H -0.25 0.09 7.11 56.52 0.40 0.49 16 37 H -0.24 -0.20 7.11 56.52 0.40 0.20 16 38 H 0.15 -0.09 7.70 -52.49 -0.40 -0.49 16 39 H 0.10 -0.24 8.10 -51.93 -0.42 -0.66 16 40 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 LS Contribution 345.32 15.07 5.20 5.20 Total: 0.00 -7.66 345.32 -10.59 -18.25 By element: Atomic # 1 Polarization: -4.74 SS G_CDS: -5.98 Total: -10.72 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.45 Total: 0.69 kcal Atomic # 7 Polarization: 0.05 SS G_CDS: -0.31 Total: -0.27 kcal Atomic # 8 Polarization: -2.98 SS G_CDS: -0.38 Total: -3.35 kcal Atomic # 14 Polarization: -1.77 SS G_CDS: -5.26 Total: -7.03 kcal Atomic # 16 Polarization: -0.36 SS G_CDS: -2.40 Total: -2.77 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -7.66 -10.59 -18.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_9865296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.710 kcal (2) G-P(sol) polarization free energy of solvation -7.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds