Wall clock time and date at job start Sun Mar 7 2021 06:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81397 * 102.99842 * 2 1 4 4 C 1.53003 * 109.47000 * 179.97438 * 3 2 1 5 5 H 1.09004 * 112.85164 * 316.19108 * 4 3 2 6 6 C 1.53778 * 113.61726 * 87.50415 * 4 3 2 7 7 C 1.53778 * 87.08449 * 139.98071 * 6 4 3 8 8 H 1.08993 * 113.61229 * 220.02023 * 7 6 4 9 9 N 1.46501 * 113.61560 * 89.11214 * 7 6 4 10 10 C 1.34781 * 119.99552 * 107.49938 * 9 7 6 11 11 O 1.21623 * 120.00042 * 0.02562 * 10 9 7 12 12 C 1.47258 * 119.99673 * 179.97438 * 10 9 7 13 13 C 1.36768 * 126.94080 * 180.02562 * 12 10 9 14 14 C 1.50698 * 125.80375 * 0.02562 * 13 12 10 15 15 N 1.34661 * 108.39921 * 180.02562 * 13 12 10 16 16 C 1.36459 * 110.29689 * 0.02562 * 15 13 12 17 17 C 1.50692 * 125.57283 * 180.02562 * 16 15 13 18 18 O 1.42901 * 109.46987 * 245.02255 * 17 16 15 19 19 Si 1.86302 * 109.47282 * 5.02084 * 17 16 15 20 20 C 1.34484 * 108.85145 * 359.70707 * 16 15 13 21 21 C 1.53784 * 87.08081 * 334.56700 * 7 6 4 22 22 H 1.09002 * 109.46939 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47190 * 300.00079 * 1 2 3 24 24 H 1.09007 * 109.46669 * 60.00146 * 1 2 3 25 25 H 1.08996 * 109.47327 * 59.99982 * 3 2 1 26 26 H 1.09005 * 109.47456 * 299.99514 * 3 2 1 27 27 H 1.08999 * 113.61111 * 254.53134 * 6 4 3 28 28 H 1.09004 * 113.61682 * 25.42530 * 6 4 3 29 29 H 0.96998 * 120.00259 * 287.50678 * 9 7 6 30 30 H 1.09000 * 109.46820 * 90.00277 * 14 13 12 31 31 H 1.09002 * 109.47232 * 210.00247 * 14 13 12 32 32 H 1.09003 * 109.47247 * 330.00298 * 14 13 12 33 33 H 0.96997 * 124.85485 * 179.97438 * 15 13 12 34 34 H 1.08998 * 109.47258 * 125.01713 * 17 16 15 35 35 H 0.96700 * 114.00320 * 60.00047 * 18 17 16 36 36 H 1.48502 * 110.00084 * 58.67841 * 19 17 16 37 37 H 1.48496 * 110.00073 * 180.02562 * 19 17 16 38 38 H 1.08000 * 126.83418 * 180.26354 * 20 16 15 39 39 H 1.09004 * 113.61451 * 270.88641 * 21 7 6 40 40 H 1.08994 * 113.61477 * 139.97943 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.2443 1.2675 0.6963 6 6 4.3620 1.9483 -1.4067 7 6 5.2876 3.0701 -0.9071 8 1 5.4519 3.8595 -1.6404 9 7 6.5314 2.5811 -0.3070 10 6 7.6985 2.7225 -0.9660 11 8 7.7192 3.2565 -2.0586 12 6 8.9489 2.2316 -0.3626 13 6 10.2041 2.3008 -0.9013 14 6 10.5583 2.9022 -2.2369 15 7 11.0697 1.7401 -0.0355 16 6 10.4097 1.2971 1.0737 17 6 11.0451 0.6160 2.2583 18 8 10.5678 -0.7279 2.3475 19 14 12.8963 0.6049 2.0489 20 6 9.1005 1.5739 0.9398 21 6 4.1962 3.4042 0.1235 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.8031 2.2371 0.8899 26 1 1.8032 2.2372 -0.8901 27 1 4.8882 1.0273 -1.6575 28 1 3.6704 2.2675 -2.1865 29 1 6.5149 2.1556 0.5645 30 1 10.7861 3.9605 -2.1098 31 1 11.4288 2.3898 -2.6468 32 1 9.7163 2.7913 -2.9202 33 1 12.0257 1.6617 -0.1798 34 1 10.7858 1.1550 3.1694 35 1 10.7637 -1.2675 1.5693 36 1 13.4016 1.9956 1.9228 37 1 13.5348 -0.0647 3.2105 38 1 8.3163 1.3533 1.6488 39 1 3.4592 4.1215 -0.2378 40 1 4.5885 3.6585 1.1081 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_9865296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:38:27 Heat of formation + Delta-G solvation = -1.997292 kcal Electronic energy + Delta-G solvation = -21567.603459 eV Core-core repulsion = 18283.513135 eV Total energy + Delta-G solvation = -3284.090323 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.119 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.49993 -41.00485 -39.16786 -37.71808 -34.64181 -32.80060 -32.19450 -30.48495 -29.61794 -28.88559 -26.68977 -25.79899 -24.24880 -23.05866 -21.58125 -20.75797 -20.14531 -18.67969 -17.84102 -17.33770 -16.99274 -16.79471 -16.55043 -16.03444 -15.93205 -15.48877 -15.30501 -14.97626 -14.86490 -14.63166 -14.47274 -14.25174 -14.09003 -13.93029 -13.76174 -13.53696 -13.36266 -13.30288 -12.79893 -12.67989 -12.55176 -12.24499 -12.06353 -11.48620 -11.20259 -10.98451 -10.87688 -10.47980 -10.12813 -9.81752 -9.17166 -8.69303 -5.15220 0.68274 0.74931 1.14468 1.23518 1.51441 1.68886 1.84226 2.01970 2.38238 2.49936 3.43546 3.46843 3.58677 3.70756 3.75248 3.85365 3.88242 4.08094 4.22964 4.28547 4.30735 4.34355 4.43961 4.44793 4.49882 4.54866 4.72000 4.74723 4.77375 4.78629 4.86992 4.87275 5.02736 5.04947 5.09470 5.19076 5.29624 5.64922 5.68686 5.85109 6.42602 6.63074 6.71340 7.33025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.325 6.325 3 C -0.061 4.061 4 C -0.088 4.088 5 H 0.093 0.907 6 C -0.141 4.141 7 C 0.115 3.885 8 H 0.088 0.912 9 N -0.701 5.701 10 C 0.589 3.411 11 O -0.585 6.585 12 C -0.267 4.267 13 C 0.121 3.879 14 C -0.097 4.097 15 N -0.533 5.533 16 C -0.023 4.023 17 C -0.039 4.039 18 O -0.549 6.549 19 Si 0.767 3.233 20 C -0.140 4.140 21 C -0.120 4.120 22 H 0.104 0.896 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.409 0.591 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.427 0.573 34 H 0.123 0.877 35 H 0.396 0.604 36 H -0.277 1.277 37 H -0.291 1.291 38 H 0.154 0.846 39 H 0.111 0.889 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.166 -0.344 0.814 1.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.099 6.099 3 C -0.209 4.209 4 C -0.107 4.107 5 H 0.112 0.888 6 C -0.180 4.180 7 C 0.009 3.991 8 H 0.106 0.894 9 N -0.351 5.351 10 C 0.380 3.620 11 O -0.467 6.467 12 C -0.277 4.277 13 C 0.001 3.999 14 C -0.154 4.154 15 N -0.133 5.133 16 C -0.131 4.131 17 C -0.150 4.150 18 O -0.357 6.357 19 Si 0.671 3.329 20 C -0.164 4.164 21 C -0.160 4.160 22 H 0.122 0.878 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.246 0.754 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.269 0.731 34 H 0.140 0.860 35 H 0.246 0.754 36 H -0.204 1.204 37 H -0.217 1.217 38 H 0.172 0.828 39 H 0.130 0.870 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.517 -0.442 0.981 2.738 hybrid contribution -1.114 0.905 0.658 1.579 sum 1.404 0.463 1.639 2.207 Atomic orbital electron populations 1.23401 0.91720 1.07150 1.05729 1.87251 1.10267 1.14205 1.98188 1.23423 0.99266 0.92365 1.05829 1.22295 0.92450 0.97944 0.98034 0.88835 1.23479 0.98521 0.98891 0.97099 1.21814 0.83193 0.97078 0.96984 0.89381 1.45372 1.05680 1.61408 1.22638 1.17619 0.83429 0.77204 0.83780 1.90720 1.87462 1.46303 1.22176 1.20175 0.92542 1.15732 0.99206 1.20566 0.88661 0.97065 0.93651 1.20624 1.03845 1.00901 0.90030 1.41664 1.10386 1.46596 1.14678 1.20679 0.93009 1.07720 0.91716 1.24620 1.10427 0.84407 0.95560 1.86519 1.82694 1.20316 1.46122 0.94309 0.71483 0.80148 0.86931 1.21954 0.95880 1.02429 0.96145 1.23346 0.96974 0.95842 0.99842 0.87779 0.89579 0.89686 0.88802 0.89077 0.92470 0.88474 0.75423 0.89961 0.88687 0.89994 0.73087 0.85994 0.75390 1.20397 1.21727 0.82848 0.87045 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.23 10.76 113.37 1.22 1.45 16 2 S -0.32 -1.02 22.37 -56.49 -1.26 -2.28 16 3 C -0.06 0.12 5.78 71.98 0.42 0.54 16 4 C -0.09 0.16 3.53 -10.27 -0.04 0.13 16 5 H 0.09 -0.05 8.13 -2.39 -0.02 -0.07 16 6 C -0.14 -0.17 7.43 31.12 0.23 0.06 16 7 C 0.12 0.21 4.32 45.52 0.20 0.40 16 8 H 0.09 0.49 7.46 -2.39 -0.02 0.48 16 9 N -0.70 -2.16 5.26 -443.46 -2.33 -4.50 16 10 C 0.59 5.14 7.81 86.61 0.68 5.81 16 11 O -0.58 -8.79 14.41 -4.10 -0.06 -8.85 16 12 C -0.27 -1.44 6.29 -19.04 -0.12 -1.56 16 13 C 0.12 0.26 7.17 41.78 0.30 0.56 16 14 C -0.10 -0.02 9.88 71.24 0.70 0.69 16 15 N -0.53 1.59 5.41 -171.07 -0.93 0.67 16 16 C -0.02 0.03 6.09 40.98 0.25 0.28 16 17 C -0.04 0.14 2.98 71.23 0.21 0.35 16 18 O -0.55 1.27 12.88 -148.98 -1.92 -0.65 16 19 Si 0.77 -4.58 30.96 68.60 2.12 -2.45 16 20 C -0.14 -0.24 10.45 23.62 0.25 0.00 16 21 C -0.12 0.45 7.39 31.12 0.23 0.68 16 22 H 0.10 -0.27 8.14 -2.39 -0.02 -0.29 16 23 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 24 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 25 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 26 H 0.09 -0.31 7.85 -2.39 -0.02 -0.33 16 27 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.10 0.01 7.90 -2.38 -0.02 -0.01 16 29 H 0.41 -0.38 7.82 -92.71 -0.73 -1.11 16 30 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 32 H 0.08 0.45 6.47 -2.39 -0.02 0.43 16 33 H 0.43 -3.87 6.72 -92.71 -0.62 -4.49 16 34 H 0.12 -0.35 7.96 -2.39 -0.02 -0.37 16 35 H 0.40 -3.89 8.70 -74.06 -0.64 -4.53 16 36 H -0.28 0.42 7.11 99.48 0.71 1.13 16 37 H -0.29 -0.58 7.11 99.48 0.71 0.12 16 38 H 0.15 -0.13 7.70 -2.91 -0.02 -0.15 16 39 H 0.11 -0.68 8.10 -2.39 -0.02 -0.70 16 40 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 Total: 0.00 -19.65 345.32 -0.73 -20.39 By element: Atomic # 1 Polarization: -10.84 SS G_CDS: -0.89 Total: -11.73 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 4.53 Total: 9.40 kcal Atomic # 7 Polarization: -0.57 SS G_CDS: -3.26 Total: -3.83 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -1.98 Total: -9.50 kcal Atomic # 14 Polarization: -4.58 SS G_CDS: 2.12 Total: -2.45 kcal Atomic # 16 Polarization: -1.02 SS G_CDS: -1.26 Total: -2.28 kcal Total: -19.65 -0.73 -20.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_9865296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.388 kcal (2) G-P(sol) polarization free energy of solvation -19.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds