Wall clock time and date at job start Sun Mar 7 2021 04:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 113.99935 * 2 1 4 4 C 1.52999 * 109.47219 * 179.97438 * 3 2 1 5 5 H 1.08993 * 112.90825 * 316.25002 * 4 3 2 6 6 C 1.53962 * 113.66529 * 87.55249 * 4 3 2 7 7 C 1.53782 * 87.11063 * 139.88900 * 6 4 3 8 8 H 1.09001 * 113.61250 * 220.08565 * 7 6 4 9 9 N 1.46496 * 113.68971 * 89.19569 * 7 6 4 10 10 C 1.34784 * 119.99758 * 107.45966 * 9 7 6 11 11 O 1.21569 * 120.00008 * 0.02562 * 10 9 7 12 12 C 1.47691 * 119.99833 * 179.97438 * 10 9 7 13 13 C 1.39828 * 120.16241 * 180.02562 * 12 10 9 14 14 F 1.35098 * 120.11240 * 359.97438 * 13 12 10 15 15 C 1.38323 * 119.77464 * 180.02562 * 13 12 10 16 16 C 1.38201 * 120.12022 * 359.97438 * 15 13 12 17 17 C 1.38464 * 120.33715 * 359.97438 * 16 15 13 18 18 C 1.50700 * 119.88827 * 179.97438 * 17 16 15 19 19 O 1.42904 * 109.46874 * 120.00669 * 18 17 16 20 20 Si 1.86299 * 109.47223 * 0.02562 * 18 17 16 21 21 C 1.37851 * 120.21801 * 359.72707 * 17 16 15 22 22 C 1.53781 * 87.08260 * 334.63747 * 7 6 4 23 23 H 1.08999 * 109.47092 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47542 * 300.00106 * 1 2 3 25 25 H 1.09005 * 109.47713 * 59.99858 * 1 2 3 26 26 H 1.09002 * 109.47483 * 59.99664 * 3 2 1 27 27 H 1.09004 * 109.46995 * 299.99840 * 3 2 1 28 28 H 1.08997 * 113.53543 * 25.33574 * 6 4 3 29 29 H 1.08994 * 113.66446 * 254.45777 * 6 4 3 30 30 H 0.97001 * 120.00688 * 287.46664 * 9 7 6 31 31 H 1.08000 * 119.93968 * 179.97438 * 15 13 12 32 32 H 1.08004 * 119.83241 * 179.97438 * 16 15 13 33 33 H 1.08994 * 109.47447 * 240.00163 * 18 17 16 34 34 H 0.96701 * 113.99977 * 180.02562 * 19 18 17 35 35 H 1.48499 * 110.00180 * 298.67983 * 20 18 17 36 36 H 1.48502 * 109.99923 * 59.99784 * 20 18 17 37 37 H 1.08001 * 120.06064 * 180.29949 * 21 17 16 38 38 H 1.09002 * 113.61445 * 139.98212 * 22 7 6 39 39 H 1.09002 * 113.61408 * 270.79943 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9008 0.4284 0.6952 6 6 4.1473 1.0757 -1.4079 7 6 5.2684 2.0019 -0.9079 8 1 5.5789 2.7466 -1.6408 9 7 6.3985 1.2878 -0.3087 10 6 7.5709 1.2070 -0.9687 11 8 7.6907 1.7271 -2.0610 12 6 8.7104 0.4875 -0.3644 13 6 9.9284 0.4021 -1.0458 14 9 10.0674 0.9771 -2.2604 15 6 10.9902 -0.2742 -0.4726 16 6 10.8481 -0.8629 0.7696 17 6 9.6445 -0.7803 1.4491 18 6 9.5005 -1.4266 2.8029 19 8 9.1717 -0.4306 3.7735 20 14 11.1059 -2.2460 3.2738 21 6 8.5791 -0.1046 0.8936 22 6 4.2602 2.5355 0.1235 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3635 0.5139 -0.8900 26 1 1.6885 1.8465 0.8899 27 1 1.6885 1.8464 -0.8900 28 1 3.5282 1.5205 -2.1870 29 1 4.4898 0.0720 -1.6596 30 1 6.3031 0.8730 0.5629 31 1 11.9321 -0.3422 -0.9967 32 1 11.6801 -1.3902 1.2127 33 1 8.7078 -2.1738 2.7664 34 1 9.0639 -0.7759 4.6703 35 1 11.4433 -3.3055 2.2896 36 1 12.1944 -1.2372 3.3273 37 1 7.6429 -0.0376 1.4279 38 1 4.6940 2.7103 1.1081 39 1 3.6731 3.3804 -0.2365 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535612_12335834.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:30:37 Heat of formation + Delta-G solvation = -96.981166 kcal Electronic energy + Delta-G solvation = -23683.584937 eV Core-core repulsion = 19894.588539 eV Total energy + Delta-G solvation = -3788.996398 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.15651 -41.71787 -40.54744 -39.52746 -38.22751 -37.44464 -34.84030 -32.79262 -32.44145 -29.66885 -27.04515 -26.68699 -26.63577 -25.69445 -23.88735 -22.94031 -21.74780 -20.37591 -19.27206 -18.65343 -18.28379 -17.85121 -17.40790 -17.09531 -16.99577 -16.76854 -16.52550 -16.26657 -15.99010 -15.90715 -15.51058 -15.17976 -14.66444 -14.55981 -14.28506 -14.12374 -13.96783 -13.77589 -13.49064 -13.42823 -12.87364 -12.68291 -12.50915 -12.38785 -12.00059 -11.84418 -11.62215 -11.32452 -11.27305 -10.60199 -10.56156 -10.40147 -10.18671 -9.88584 -4.90899 -0.68113 -0.18597 1.29997 1.45167 1.68773 1.81327 1.98636 2.31399 2.78922 2.87356 3.21644 3.24411 3.38765 3.45935 3.57841 3.63750 3.78559 3.86423 3.94573 4.05596 4.23569 4.33399 4.38764 4.47039 4.48239 4.59029 4.60326 4.62043 4.64609 4.69969 4.72981 4.74128 4.80038 4.85441 4.97981 4.98799 5.05941 5.10880 5.40938 5.49263 6.23469 6.26415 6.93166 6.94604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.066 3.934 4 C -0.102 4.102 5 H 0.101 0.899 6 C -0.144 4.144 7 C 0.109 3.891 8 H 0.087 0.913 9 N -0.689 5.689 10 C 0.558 3.442 11 O -0.568 6.568 12 C -0.184 4.184 13 C 0.135 3.865 14 F -0.132 7.132 15 C -0.153 4.153 16 C -0.074 4.074 17 C -0.100 4.100 18 C -0.074 4.074 19 O -0.561 6.561 20 Si 0.766 3.234 21 C -0.020 4.020 22 C -0.120 4.120 23 H 0.090 0.910 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.415 0.585 31 H 0.164 0.836 32 H 0.142 0.858 33 H 0.109 0.891 34 H 0.407 0.593 35 H -0.285 1.285 36 H -0.295 1.295 37 H 0.168 0.832 38 H 0.093 0.907 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.338 -3.521 9.397 10.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.011 4.011 4 C -0.121 4.121 5 H 0.119 0.881 6 C -0.183 4.183 7 C 0.004 3.996 8 H 0.105 0.895 9 N -0.341 5.341 10 C 0.346 3.654 11 O -0.448 6.448 12 C -0.188 4.188 13 C 0.114 3.886 14 F -0.111 7.111 15 C -0.172 4.172 16 C -0.091 4.091 17 C -0.100 4.100 18 C -0.184 4.184 19 O -0.371 6.371 20 Si 0.672 3.328 21 C -0.038 4.038 22 C -0.158 4.158 23 H 0.109 0.891 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.254 0.746 31 H 0.182 0.818 32 H 0.159 0.841 33 H 0.126 0.874 34 H 0.259 0.741 35 H -0.212 1.212 36 H -0.222 1.222 37 H 0.185 0.815 38 H 0.111 0.889 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.331 -3.081 7.840 8.740 hybrid contribution -0.295 0.401 -0.800 0.942 sum -2.626 -2.680 7.040 7.977 Atomic orbital electron populations 1.22880 0.79897 1.03540 1.00746 1.87848 1.21033 1.29148 1.95591 1.22667 0.92938 0.84347 1.01110 1.22593 0.93154 0.98794 0.97541 0.88080 1.23527 0.97053 1.00007 0.97726 1.21937 0.85158 0.95097 0.97422 0.89480 1.45411 1.10334 1.55787 1.22613 1.18207 0.83201 0.79457 0.84519 1.90837 1.83809 1.48214 1.21914 1.20119 0.93778 1.06683 0.98188 1.18076 0.94357 0.94877 0.81261 1.91564 1.96113 1.82005 1.41377 1.21278 0.99295 0.99553 0.97033 1.21181 0.97091 0.96928 0.93940 1.19758 0.93312 1.00126 0.96803 1.24717 1.12586 0.94658 0.86399 1.86426 1.93514 1.35372 1.21834 0.94117 0.73642 0.77401 0.87669 1.21245 1.00233 0.91662 0.90683 1.23283 0.95561 0.97080 0.99866 0.89116 0.93061 0.93528 0.91864 0.92558 0.88629 0.92268 0.74610 0.81816 0.84072 0.87365 0.74076 1.21159 1.22227 0.81480 0.88893 0.87013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 11.01 113.37 1.25 1.21 16 2 O -0.42 -1.30 10.70 -148.98 -1.59 -2.89 16 3 C 0.07 -0.11 5.78 71.98 0.42 0.30 16 4 C -0.10 0.28 3.90 -10.20 -0.04 0.24 16 5 H 0.10 -0.32 8.14 -2.39 -0.02 -0.34 16 6 C -0.14 -0.13 7.44 31.18 0.23 0.10 16 7 C 0.11 0.15 4.32 45.52 0.20 0.35 16 8 H 0.09 0.52 7.46 -2.39 -0.02 0.50 16 9 N -0.69 -1.24 5.22 -443.05 -2.31 -3.55 16 10 C 0.56 5.45 7.77 86.74 0.67 6.12 16 11 O -0.57 -10.76 14.94 -3.93 -0.06 -10.82 16 12 C -0.18 -1.25 5.88 -20.05 -0.12 -1.37 16 13 C 0.13 1.27 7.29 22.67 0.17 1.43 16 14 F -0.13 -2.03 15.55 44.97 0.70 -1.33 16 15 C -0.15 -0.61 10.01 22.28 0.22 -0.39 16 16 C -0.07 -0.12 8.66 22.31 0.19 0.07 16 17 C -0.10 0.01 5.42 -19.90 -0.11 -0.10 16 18 C -0.07 0.47 2.81 71.24 0.20 0.67 16 19 O -0.56 3.68 12.73 -148.98 -1.90 1.78 16 20 Si 0.77 -4.99 29.77 68.60 2.04 -2.95 16 21 C -0.02 -0.01 9.09 22.52 0.20 0.20 16 22 C -0.12 0.57 7.38 31.12 0.23 0.80 16 23 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 24 H 0.05 -0.19 8.14 -2.38 -0.02 -0.21 16 25 H 0.05 -0.13 8.14 -2.38 -0.02 -0.15 16 26 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 27 H 0.06 -0.15 7.85 -2.38 -0.02 -0.17 16 28 H 0.10 0.03 7.90 -2.39 -0.02 0.01 16 29 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.42 -1.89 6.74 -92.71 -0.62 -2.51 16 31 H 0.16 -0.02 8.06 -2.91 -0.02 -0.04 16 32 H 0.14 -0.10 4.86 -2.91 -0.01 -0.12 16 33 H 0.11 -1.24 7.96 -2.39 -0.02 -1.26 16 34 H 0.41 -6.74 8.74 -74.06 -0.65 -7.39 16 35 H -0.28 0.33 7.11 99.48 0.71 1.04 16 36 H -0.29 -0.38 7.11 99.48 0.71 0.33 16 37 H 0.17 -1.01 6.41 -2.91 -0.02 -1.03 16 38 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 39 H 0.11 -0.75 8.10 -2.39 -0.02 -0.77 16 Total: 0.00 -23.69 330.96 0.45 -23.24 By element: Atomic # 1 Polarization: -12.99 SS G_CDS: -0.14 Total: -13.13 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 3.72 Total: 9.65 kcal Atomic # 7 Polarization: -1.24 SS G_CDS: -2.31 Total: -3.55 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -3.55 Total: -11.93 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.70 Total: -1.33 kcal Atomic # 14 Polarization: -4.99 SS G_CDS: 2.04 Total: -2.95 kcal Total: -23.69 0.45 -23.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535612_12335834.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.741 kcal (2) G-P(sol) polarization free energy of solvation -23.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds