Wall clock time and date at job start Sun Mar 7 2021 04:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47429 * 2 1 4 4 C 1.52993 * 109.47473 * 173.59219 * 3 2 1 5 5 C 1.52999 * 109.46966 * 293.59506 * 3 2 1 6 6 C 1.50697 * 109.47408 * 66.37252 * 5 3 2 7 7 O 1.21282 * 120.00091 * 237.24367 * 6 5 3 8 8 N 1.34769 * 120.00151 * 57.24356 * 6 5 3 9 9 C 1.46505 * 120.00509 * 174.99906 * 8 6 5 10 10 H 1.08996 * 112.84680 * 23.80368 * 9 8 6 11 11 C 1.53779 * 113.61623 * 154.99866 * 9 8 6 12 12 C 1.53776 * 87.08051 * 89.20106 * 11 9 8 13 13 H 1.09000 * 113.61701 * 270.79794 * 12 11 9 14 14 C 1.53005 * 113.61341 * 139.98020 * 12 11 9 15 15 O 1.42896 * 109.47057 * 175.00082 * 14 12 11 16 16 C 1.42902 * 113.99940 * 180.02562 * 15 14 12 17 17 C 1.53776 * 87.08268 * 25.43288 * 12 11 9 18 18 N 1.46501 * 109.46903 * 306.37050 * 5 3 2 19 19 C 1.36341 * 125.63448 * 68.62634 * 18 5 3 20 20 C 1.34852 * 108.22087 * 180.02562 * 19 18 5 21 21 C 1.40896 * 107.41531 * 359.97438 * 20 19 18 22 22 C 1.34849 * 107.41578 * 359.73950 * 21 20 19 23 23 C 1.50703 * 125.89318 * 180.25489 * 22 21 20 24 24 O 1.42900 * 109.47452 * 150.19615 * 23 22 21 25 25 Si 1.86307 * 109.47033 * 30.19835 * 23 22 21 26 26 H 1.08996 * 109.47088 * 71.58513 * 1 2 3 27 27 H 1.09000 * 109.46879 * 191.58831 * 1 2 3 28 28 H 1.09009 * 109.46850 * 311.58532 * 1 2 3 29 29 H 1.09003 * 109.47384 * 240.00313 * 2 1 3 30 30 H 1.08995 * 109.47176 * 119.99878 * 2 1 3 31 31 H 1.09002 * 109.47030 * 53.58945 * 3 2 1 32 32 H 1.09007 * 109.47357 * 184.86487 * 4 3 2 33 33 H 1.09003 * 109.47380 * 304.85972 * 4 3 2 34 34 H 1.08998 * 109.46956 * 64.86362 * 4 3 2 35 35 H 1.09000 * 109.47062 * 186.37447 * 5 3 2 36 36 H 0.97007 * 120.00418 * 355.00030 * 8 6 5 37 37 H 1.09000 * 113.61443 * 334.64890 * 11 9 8 38 38 H 1.09006 * 113.61166 * 203.75217 * 11 9 8 39 39 H 1.08997 * 109.46994 * 55.00218 * 14 12 11 40 40 H 1.09005 * 109.46853 * 294.99710 * 14 12 11 41 41 H 1.09005 * 109.47247 * 180.02562 * 16 15 14 42 42 H 1.09007 * 109.47057 * 299.99808 * 16 15 14 43 43 H 1.08994 * 109.47412 * 59.99658 * 16 15 14 44 44 H 1.09001 * 113.61891 * 89.11567 * 17 12 11 45 45 H 1.09000 * 113.61856 * 220.01857 * 17 12 11 46 46 H 1.08001 * 125.88980 * 0.02562 * 19 18 5 47 47 H 1.07998 * 126.29585 * 179.97438 * 20 19 18 48 48 H 1.07998 * 126.29460 * 180.02562 * 21 20 19 49 49 H 1.09000 * 109.47182 * 270.19997 * 23 22 21 50 50 H 0.96693 * 114.00068 * 300.00537 * 24 23 22 51 51 H 1.48501 * 109.99605 * 58.68057 * 25 23 22 52 52 H 1.48496 * 109.99755 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5615 1.4455 0.1610 5 6 1.6657 2.1157 -1.3219 6 6 0.1676 2.2537 -1.4089 7 8 -0.4333 1.7645 -2.3420 8 7 -0.5045 2.9205 -0.4498 9 6 -1.9449 3.1496 -0.5890 10 1 -2.4275 2.4239 -1.2436 11 6 -2.6698 3.3466 0.7528 12 6 -2.3653 4.8469 0.6073 13 1 -1.4091 5.1423 1.0391 14 6 -3.5193 5.7516 1.0440 15 8 -3.1031 7.1173 0.9832 16 6 -4.1124 8.0504 1.3739 17 6 -2.3103 4.6082 -0.9109 18 7 2.1467 1.2992 -2.4391 19 6 1.6647 0.0737 -2.7926 20 6 2.3580 -0.3586 -3.8654 21 6 3.3022 0.6367 -4.1864 22 6 3.1460 1.6418 -3.3011 23 6 3.9418 2.9211 -3.2673 24 8 3.1326 3.9716 -2.7348 25 14 4.4774 3.3651 -4.9956 26 1 -0.3633 0.3246 -0.9750 27 1 -0.3633 -1.0067 0.2064 28 1 -0.3633 0.6822 0.7687 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5861 1.9884 0.8271 32 1 3.9157 2.4727 0.2477 33 1 3.8330 0.8906 1.0591 34 1 4.0198 0.9754 -0.7091 35 1 2.1249 3.1032 -1.3695 36 1 -0.0347 3.2490 0.3327 37 1 -2.1626 2.8778 1.5961 38 1 -3.7334 3.1110 0.7132 39 1 -3.8077 5.5049 2.0658 40 1 -4.3704 5.6012 0.3797 41 1 -3.7184 9.0641 1.2998 42 1 -4.9761 7.9478 0.7168 43 1 -4.4128 7.8513 2.4025 44 1 -3.2755 4.7176 -1.4054 45 1 -1.5129 5.1580 -1.4108 46 1 0.8656 -0.4589 -2.2985 47 1 2.2157 -1.2956 -4.3833 48 1 4.0164 0.6031 -4.9959 49 1 4.8214 2.7854 -2.6380 50 1 2.3307 4.1478 -3.2456 51 1 3.2883 3.5216 -5.8713 52 1 5.2637 4.6246 -4.9758 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535612_12360566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:31:05 Heat of formation + Delta-G solvation = -20.496778 kcal Electronic energy + Delta-G solvation = -32018.800904 eV Core-core repulsion = 27987.687227 eV Total energy + Delta-G solvation = -4031.113676 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.209 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.97002 -41.32531 -39.86081 -38.31786 -37.95975 -37.45631 -34.45940 -33.04377 -31.47627 -30.61858 -29.98712 -28.10612 -27.01988 -26.69614 -25.95208 -24.64767 -23.73365 -22.45579 -21.76831 -21.39455 -20.40090 -20.31385 -18.85692 -18.26620 -17.52727 -17.33176 -17.17624 -16.84412 -16.74397 -16.41093 -16.29253 -15.75879 -15.27241 -15.21881 -15.02174 -14.90359 -14.56748 -14.35244 -14.29369 -14.15178 -14.01028 -13.85736 -13.71151 -13.60582 -13.21436 -13.05503 -12.97810 -12.80585 -12.49888 -12.43942 -12.27008 -12.10329 -11.96122 -11.84525 -11.76432 -11.58232 -11.51205 -11.40868 -11.05374 -10.69299 -10.66037 -10.14546 -9.38381 -8.69597 -4.88768 1.08153 1.39392 1.50885 1.70636 1.76003 1.99087 2.27091 2.33356 2.66639 3.08748 3.29937 3.33701 3.44999 3.51121 3.61046 3.69578 3.79157 3.82407 3.93316 4.19401 4.20205 4.24602 4.25764 4.32764 4.36049 4.41082 4.45095 4.47429 4.54123 4.55006 4.55728 4.59306 4.61913 4.68360 4.71824 4.78279 4.81071 4.87058 4.91925 4.92902 4.95061 5.02999 5.04933 5.13995 5.20394 5.33440 5.45366 5.49721 5.55191 6.07613 6.12762 6.22785 6.30324 6.45669 6.54879 7.02446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 C -0.094 4.094 4 C -0.148 4.148 5 C 0.099 3.901 6 C 0.520 3.480 7 O -0.520 6.520 8 N -0.709 5.709 9 C 0.120 3.880 10 H 0.107 0.893 11 C -0.137 4.137 12 C -0.109 4.109 13 H 0.098 0.902 14 C 0.069 3.931 15 O -0.391 6.391 16 C 0.030 3.970 17 C -0.143 4.143 18 N -0.412 5.412 19 C 0.021 3.979 20 C -0.206 4.206 21 C -0.182 4.182 22 C -0.024 4.024 23 C -0.049 4.049 24 O -0.536 6.536 25 Si 0.712 3.288 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.152 0.848 36 H 0.402 0.598 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.087 0.913 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.092 0.908 45 H 0.073 0.927 46 H 0.162 0.838 47 H 0.137 0.863 48 H 0.144 0.856 49 H 0.119 0.881 50 H 0.377 0.623 51 H -0.258 1.258 52 H -0.257 1.257 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.174 0.174 3.758 3.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.179 4.179 3 C -0.113 4.113 4 C -0.205 4.205 5 C -0.007 4.007 6 C 0.306 3.694 7 O -0.396 6.396 8 N -0.361 5.361 9 C 0.015 3.985 10 H 0.125 0.875 11 C -0.175 4.175 12 C -0.128 4.128 13 H 0.117 0.883 14 C -0.008 4.008 15 O -0.310 6.310 16 C -0.066 4.066 17 C -0.182 4.182 18 N -0.089 5.089 19 C -0.108 4.108 20 C -0.230 4.230 21 C -0.206 4.206 22 C -0.134 4.134 23 C -0.158 4.158 24 O -0.343 6.343 25 Si 0.612 3.388 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.169 0.831 36 H 0.237 0.763 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.111 0.889 45 H 0.092 0.908 46 H 0.180 0.820 47 H 0.154 0.846 48 H 0.161 0.839 49 H 0.137 0.863 50 H 0.226 0.774 51 H -0.182 1.182 52 H -0.182 1.182 Dipole moment (debyes) X Y Z Total from point charges -0.110 0.699 3.082 3.162 hybrid contribution -1.359 0.552 1.075 1.819 sum -1.469 1.251 4.158 4.584 Atomic orbital electron populations 1.22368 0.95704 1.02511 1.03541 1.22020 0.96172 0.95644 1.04070 1.21525 0.98220 0.97429 0.94158 1.21833 0.93517 1.02450 1.02727 1.21874 0.92240 0.99114 0.87489 1.20454 0.89502 0.77206 0.82237 1.90793 1.69266 1.46432 1.33060 1.45643 1.08772 1.58083 1.23619 1.21824 0.80492 0.97893 0.98301 0.87519 1.23329 1.01835 0.94970 0.97370 1.22604 0.99367 0.93759 0.97031 0.88340 1.22559 0.96492 0.81751 0.99960 1.87890 1.38868 1.15521 1.88714 1.22765 0.91709 0.93446 0.98684 1.23484 1.02849 0.95928 0.95915 1.43413 1.27938 1.14775 1.22742 1.21844 1.02139 0.87093 0.99773 1.20842 1.00691 1.01460 1.00040 1.20558 1.03464 0.95011 1.01610 1.20643 0.97446 0.99293 0.96042 1.24760 0.95248 0.83109 1.12707 1.86441 1.38768 1.54963 1.54114 0.94386 0.84883 0.85207 0.74358 0.90494 0.92326 0.92489 0.89513 0.91214 0.89646 0.92121 0.91812 0.91754 0.83110 0.76297 0.90331 0.88316 0.93103 0.93003 0.89471 0.93993 0.93989 0.88930 0.90787 0.82047 0.84559 0.83895 0.86320 0.77446 1.18249 1.18188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.01 7.92 37.16 0.29 0.30 16 2 C -0.14 0.06 4.86 -26.73 -0.13 -0.07 16 3 C -0.09 0.13 2.34 -90.62 -0.21 -0.09 16 4 C -0.15 0.16 9.14 37.15 0.34 0.50 16 5 C 0.10 0.00 2.40 -69.08 -0.17 -0.17 16 6 C 0.52 0.48 4.21 -10.99 -0.05 0.43 16 7 O -0.52 -2.41 13.20 5.56 0.07 -2.34 16 8 N -0.71 1.09 4.38 -53.02 -0.23 0.86 16 9 C 0.12 -0.14 4.35 -67.12 -0.29 -0.43 16 10 H 0.11 0.06 7.42 -51.93 -0.39 -0.32 16 11 C -0.14 0.38 7.39 -25.92 -0.19 0.19 16 12 C -0.11 0.18 3.89 -89.81 -0.35 -0.17 16 13 H 0.10 -0.14 8.14 -51.93 -0.42 -0.57 16 14 C 0.07 -0.05 5.78 37.16 0.21 0.16 16 15 O -0.39 -0.63 10.70 -35.23 -0.38 -1.01 16 16 C 0.03 -0.02 11.01 101.05 1.11 1.09 16 17 C -0.14 0.12 7.43 -25.92 -0.19 -0.07 16 18 N -0.41 -0.69 1.90 -106.71 -0.20 -0.89 16 19 C 0.02 0.06 6.84 -16.75 -0.11 -0.06 16 20 C -0.21 -0.57 10.86 -39.78 -0.43 -1.00 16 21 C -0.18 -0.33 9.43 -39.78 -0.38 -0.70 16 22 C -0.02 -0.04 5.85 -81.79 -0.48 -0.52 16 23 C -0.05 0.00 2.99 36.01 0.11 0.11 16 24 O -0.54 -0.20 9.78 -35.23 -0.34 -0.54 16 25 Si 0.71 -0.24 31.15 -169.99 -5.29 -5.53 16 26 H 0.08 0.14 3.35 -51.93 -0.17 -0.04 16 27 H 0.06 0.01 8.14 -51.93 -0.42 -0.42 16 28 H 0.06 -0.05 7.47 -51.92 -0.39 -0.43 16 29 H 0.09 0.07 4.49 -51.93 -0.23 -0.16 16 30 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 31 H 0.09 -0.25 7.07 -51.93 -0.37 -0.61 16 32 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 33 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 34 H 0.06 0.02 7.39 -51.93 -0.38 -0.36 16 35 H 0.15 -0.05 4.98 -51.93 -0.26 -0.31 16 36 H 0.40 -1.40 7.74 -40.82 -0.32 -1.71 16 37 H 0.08 -0.26 8.14 -51.93 -0.42 -0.69 16 38 H 0.10 -0.33 8.10 -51.93 -0.42 -0.75 16 39 H 0.05 -0.08 8.14 -51.93 -0.42 -0.50 16 40 H 0.05 -0.07 7.84 -51.93 -0.41 -0.48 16 41 H 0.09 -0.12 8.14 -51.93 -0.42 -0.54 16 42 H 0.04 -0.06 8.14 -51.93 -0.42 -0.48 16 43 H 0.04 -0.06 8.14 -51.93 -0.42 -0.49 16 44 H 0.09 -0.09 7.90 -51.93 -0.41 -0.50 16 45 H 0.07 0.03 8.14 -51.93 -0.42 -0.40 16 46 H 0.16 0.42 5.14 -52.49 -0.27 0.15 16 47 H 0.14 0.21 8.06 -52.49 -0.42 -0.21 16 48 H 0.14 -0.08 6.90 -52.49 -0.36 -0.44 16 49 H 0.12 -0.13 7.96 -51.93 -0.41 -0.54 16 50 H 0.38 -0.29 8.70 45.56 0.40 0.11 16 51 H -0.26 -0.74 7.11 56.52 0.40 -0.34 16 52 H -0.26 -0.60 7.11 56.52 0.40 -0.20 16 LS Contribution 392.09 15.07 5.91 5.91 Total: 0.00 -6.67 392.09 -10.04 -16.71 By element: Atomic # 1 Polarization: -4.04 SS G_CDS: -8.66 Total: -12.70 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -0.91 Total: -0.47 kcal Atomic # 7 Polarization: 0.40 SS G_CDS: -0.44 Total: -0.03 kcal Atomic # 8 Polarization: -3.23 SS G_CDS: -0.65 Total: -3.88 kcal Atomic # 14 Polarization: -0.24 SS G_CDS: -5.29 Total: -5.53 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -6.67 -10.04 -16.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535612_12360566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.784 kcal (2) G-P(sol) polarization free energy of solvation -6.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds