Wall clock time and date at job start Sun Mar 7 2021 04:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42905 * 113.99544 * 2 1 4 4 C 1.53005 * 109.46633 * 179.97438 * 3 2 1 5 5 H 1.08997 * 112.84758 * 316.19451 * 4 3 2 6 6 C 1.53780 * 113.68713 * 87.46424 * 4 3 2 7 7 C 1.53786 * 87.07975 * 139.99116 * 6 4 3 8 8 H 1.08998 * 113.69170 * 220.01093 * 7 6 4 9 9 N 1.46499 * 113.61533 * 89.11150 * 7 6 4 10 10 C 1.34776 * 119.99834 * 107.50574 * 9 7 6 11 11 O 1.21287 * 120.00183 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00203 * 179.97438 * 10 9 7 13 13 N 1.46504 * 109.47222 * 179.97438 * 12 10 9 14 14 C 1.35035 * 125.92524 * 125.02810 * 13 12 10 15 15 C 1.35088 * 107.97927 * 179.97438 * 14 13 12 16 16 C 1.50696 * 126.07782 * 180.26144 * 15 14 13 17 17 O 1.42903 * 109.47075 * 105.17730 * 16 15 14 18 18 Si 1.86297 * 109.47086 * 345.17700 * 16 15 14 19 19 C 1.40852 * 107.84589 * 0.02562 * 15 14 13 20 20 C 1.48415 * 126.03883 * 180.02562 * 19 15 14 21 21 C 1.39350 * 120.06215 * 317.19219 * 20 19 15 22 22 C 1.37925 * 119.93220 * 179.71993 * 21 20 19 23 23 C 1.38819 * 120.06555 * 0.55485 * 22 21 20 24 24 O 1.35886 * 119.93796 * 179.70601 * 23 22 21 25 25 C 1.42895 * 116.99954 * 0.02562 * 24 23 22 26 26 C 1.38821 * 120.12544 * 359.71900 * 23 22 21 27 27 C 1.37917 * 120.06319 * 0.02562 * 26 23 22 28 28 N 1.31626 * 107.92520 * 0.02562 * 19 15 14 29 29 C 1.53783 * 113.61093 * 184.99962 * 4 3 2 30 30 H 1.08996 * 109.46618 * 60.00359 * 1 2 3 31 31 H 1.09001 * 109.46371 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47396 * 300.00245 * 1 2 3 33 33 H 1.08998 * 109.47382 * 59.99923 * 3 2 1 34 34 H 1.08991 * 109.47106 * 299.99470 * 3 2 1 35 35 H 1.08997 * 113.61718 * 25.44522 * 6 4 3 36 36 H 1.09000 * 113.61105 * 254.53294 * 6 4 3 37 37 H 0.96993 * 120.00158 * 287.50489 * 9 7 6 38 38 H 1.09004 * 109.46891 * 60.00522 * 12 10 9 39 39 H 1.08999 * 109.47207 * 299.99750 * 12 10 9 40 40 H 1.07996 * 126.01370 * 359.97438 * 14 13 12 41 41 H 1.09002 * 109.47356 * 225.17128 * 16 15 14 42 42 H 0.96703 * 114.00186 * 180.02562 * 17 16 15 43 43 H 1.48504 * 109.99950 * 298.67649 * 18 16 15 44 44 H 1.48497 * 110.00367 * 59.99828 * 18 16 15 45 45 H 1.08006 * 120.03705 * 359.97438 * 21 20 19 46 46 H 1.08006 * 119.96937 * 180.25507 * 22 21 20 47 47 H 1.08999 * 109.47228 * 60.00890 * 25 24 23 48 48 H 1.09005 * 109.47368 * 180.02562 * 25 24 23 49 49 H 1.08998 * 109.47723 * 300.00660 * 25 24 23 50 50 H 1.08000 * 119.96619 * 179.97438 * 26 23 22 51 51 H 1.08011 * 120.03073 * 179.97438 * 27 26 23 52 52 H 1.08999 * 113.61506 * 105.38566 * 29 4 3 53 53 H 1.08996 * 113.61424 * 334.48388 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8999 0.4288 0.6962 6 6 4.1470 1.0736 -1.4059 7 6 5.2692 1.9985 -0.9055 8 1 5.5832 2.7420 -1.6380 9 7 6.3960 1.2814 -0.3036 10 6 7.5695 1.1970 -0.9609 11 8 7.6926 1.7143 -2.0510 12 6 8.7289 0.4600 -0.3415 13 7 9.8796 0.5108 -1.2468 14 6 11.1133 0.9631 -0.9354 15 6 11.8902 0.8454 -2.0343 16 6 13.3446 1.2263 -2.1377 17 8 14.1476 0.0443 -2.1387 18 14 13.8119 2.2935 -0.6840 19 6 11.1008 0.2984 -3.0645 20 6 11.5532 -0.0010 -4.4460 21 6 12.3586 0.9080 -5.1292 22 6 12.7822 0.6245 -6.4107 23 6 12.3976 -0.5599 -7.0243 24 8 12.8116 -0.8339 -8.2892 25 6 13.6401 0.1407 -8.9261 26 6 11.5906 -1.4647 -6.3482 27 6 11.1682 -1.1889 -5.0646 28 7 9.8909 0.0995 -2.5857 29 6 4.2603 2.5355 0.1235 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6886 1.8465 0.8899 34 1 1.6887 1.8464 -0.8900 35 1 3.5302 1.5185 -2.1867 36 1 4.4882 0.0689 -1.6555 37 1 6.2975 0.8675 0.5680 38 1 8.4484 -0.5791 -0.1691 39 1 8.9916 0.9278 0.6073 40 1 11.4242 1.3507 0.0234 41 1 13.5105 1.7790 -3.0625 42 1 15.0975 0.2141 -2.2027 43 1 13.0061 3.5408 -0.6897 44 1 13.5903 1.5514 0.5830 45 1 12.6542 1.8319 -4.6541 46 1 13.4099 1.3267 -6.9393 47 1 14.5509 0.2797 -8.3436 48 1 13.8983 -0.2010 -9.9285 49 1 13.1032 1.0869 -8.9921 50 1 11.2925 -2.3852 -6.8282 51 1 10.5400 -1.8931 -4.5392 52 1 4.6928 2.7109 1.1085 53 1 3.6744 3.3799 -0.2391 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535612_12622750.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:31:23 Heat of formation + Delta-G solvation = -4.614519 kcal Electronic energy + Delta-G solvation = -35343.935593 eV Core-core repulsion = 30572.035577 eV Total energy + Delta-G solvation = -4771.900016 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.188 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.62044 -41.41341 -40.99525 -39.79016 -38.48841 -38.25451 -37.55701 -34.89348 -34.43330 -32.43637 -32.10777 -31.26083 -29.92607 -28.85011 -27.96677 -27.00923 -26.67497 -25.92545 -24.21077 -23.67306 -23.41059 -22.18713 -21.68973 -20.95819 -20.37925 -19.19001 -18.60309 -18.38953 -18.23869 -17.44852 -17.21528 -17.07806 -16.99513 -16.78118 -16.66398 -16.30577 -16.25461 -15.84420 -15.72969 -15.37494 -15.17757 -15.07958 -14.93274 -14.70863 -14.58390 -14.33414 -14.29169 -14.01470 -13.84362 -13.66751 -13.54618 -13.42374 -13.00788 -12.88657 -12.80339 -12.63799 -12.43742 -12.17696 -12.07722 -11.88931 -11.80075 -11.72239 -11.65329 -11.36410 -11.32909 -10.64432 -10.59023 -10.22285 -10.15348 -10.02667 -9.78687 -9.00656 -4.91536 0.04842 0.30500 0.64344 1.13794 1.33236 1.37714 1.53679 1.75183 1.94169 2.01364 2.32750 2.73310 2.74641 3.20786 3.39605 3.45722 3.45967 3.54004 3.73092 3.73790 3.77449 3.83673 3.88291 3.90324 3.98730 4.08869 4.20254 4.25977 4.29615 4.34359 4.35664 4.41169 4.43046 4.45232 4.54045 4.55220 4.57168 4.63246 4.64706 4.68419 4.74791 4.75709 4.81065 4.81610 4.94067 4.98783 4.99471 5.02574 5.09899 5.22737 5.44606 5.47241 5.48037 5.65051 5.73206 6.18851 6.33406 6.38327 6.46385 7.03533 7.03683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.065 3.935 4 C -0.102 4.102 5 H 0.103 0.897 6 C -0.147 4.147 7 C 0.115 3.885 8 H 0.080 0.920 9 N -0.694 5.694 10 C 0.499 3.501 11 O -0.562 6.562 12 C 0.109 3.891 13 N -0.361 5.361 14 C 0.057 3.943 15 C -0.227 4.227 16 C -0.047 4.047 17 O -0.564 6.564 18 Si 0.782 3.218 19 C 0.120 3.880 20 C -0.063 4.063 21 C -0.055 4.055 22 C -0.201 4.201 23 C 0.126 3.874 24 O -0.334 6.334 25 C 0.016 3.984 26 C -0.162 4.162 27 C -0.064 4.064 28 N -0.290 5.290 29 C -0.118 4.118 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.421 0.579 38 H 0.143 0.857 39 H 0.174 0.826 40 H 0.198 0.802 41 H 0.078 0.922 42 H 0.398 0.602 43 H -0.292 1.292 44 H -0.279 1.279 45 H 0.143 0.857 46 H 0.160 0.840 47 H 0.070 0.930 48 H 0.117 0.883 49 H 0.065 0.935 50 H 0.140 0.860 51 H 0.124 0.876 52 H 0.096 0.904 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.252 4.403 6.083 7.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.012 4.012 4 C -0.120 4.120 5 H 0.121 0.879 6 C -0.186 4.186 7 C 0.009 3.991 8 H 0.098 0.902 9 N -0.348 5.348 10 C 0.285 3.715 11 O -0.439 6.439 12 C -0.015 4.015 13 N -0.142 5.142 14 C -0.089 4.089 15 C -0.238 4.238 16 C -0.156 4.156 17 O -0.373 6.373 18 Si 0.685 3.315 19 C -0.045 4.045 20 C -0.065 4.065 21 C -0.075 4.075 22 C -0.220 4.220 23 C 0.080 3.920 24 O -0.248 6.248 25 C -0.078 4.078 26 C -0.181 4.181 27 C -0.083 4.083 28 N -0.111 5.111 29 C -0.156 4.156 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.259 0.741 38 H 0.161 0.839 39 H 0.191 0.809 40 H 0.215 0.785 41 H 0.096 0.904 42 H 0.248 0.752 43 H -0.219 1.219 44 H -0.206 1.206 45 H 0.161 0.839 46 H 0.178 0.822 47 H 0.089 0.911 48 H 0.135 0.865 49 H 0.084 0.916 50 H 0.158 0.842 51 H 0.142 0.858 52 H 0.115 0.885 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.230 4.126 5.843 7.157 hybrid contribution -0.330 0.042 -0.016 0.333 sum -0.099 4.168 5.828 7.165 Atomic orbital electron populations 1.22886 0.79856 1.03566 1.00767 1.87853 1.21098 1.29215 1.95592 1.22682 0.93163 0.84308 1.01009 1.22570 0.93011 0.98991 0.97464 0.87921 1.23486 0.97432 1.00007 0.97671 1.21811 0.85433 0.94750 0.97097 0.90157 1.45427 1.10322 1.56099 1.22927 1.21000 0.84780 0.80271 0.85487 1.90816 1.83481 1.47554 1.22088 1.21982 0.82050 1.05279 0.92158 1.48094 1.08854 1.48588 1.08695 1.22592 0.85451 1.00364 1.00446 1.19889 0.97290 1.13452 0.93214 1.24343 0.86678 0.93491 1.11116 1.86499 1.22519 1.30924 1.97375 0.94132 0.88905 0.74437 0.73993 1.20835 0.90613 0.98514 0.94535 1.17807 1.01852 0.96503 0.90346 1.21077 0.94395 0.98408 0.93577 1.21393 1.05933 0.97992 0.96636 1.19258 0.94150 0.93966 0.84597 1.86062 1.65832 1.47597 1.25318 1.23390 0.93707 0.91974 0.98767 1.20477 1.01737 1.01090 0.94784 1.20987 0.97390 0.96003 0.93902 1.77708 1.19607 1.22757 0.91074 1.23261 0.95558 0.96759 1.00028 0.93525 0.89113 0.92996 0.91831 0.92783 0.89260 0.92526 0.74130 0.83945 0.80911 0.78519 0.90394 0.75197 1.21868 1.20552 0.83946 0.82242 0.91093 0.86519 0.91621 0.84227 0.85812 0.88501 0.87477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 11.01 113.37 1.25 1.22 16 2 O -0.42 -1.65 10.70 -148.98 -1.59 -3.25 16 3 C 0.06 -0.08 5.78 71.98 0.42 0.34 16 4 C -0.10 0.29 3.88 -10.27 -0.04 0.26 16 5 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 6 C -0.15 -0.18 7.43 31.12 0.23 0.05 16 7 C 0.11 0.01 4.32 45.52 0.20 0.21 16 8 H 0.08 0.46 7.46 -2.39 -0.02 0.44 16 9 N -0.69 1.59 5.26 -440.02 -2.32 -0.73 16 10 C 0.50 2.30 7.86 87.66 0.69 2.99 16 11 O -0.56 -9.47 15.30 -3.05 -0.05 -9.51 16 12 C 0.11 -0.18 6.99 85.63 0.60 0.42 16 13 N -0.36 -3.02 3.40 -351.91 -1.20 -4.21 16 14 C 0.06 0.37 9.96 83.47 0.83 1.20 16 15 C -0.23 -2.14 5.39 -19.95 -0.11 -2.24 16 16 C -0.05 -0.11 2.50 71.23 0.18 0.07 16 17 O -0.56 -1.58 12.86 -148.98 -1.92 -3.49 16 18 Si 0.78 -2.13 30.77 68.60 2.11 -0.02 16 19 C 0.12 1.72 6.66 42.53 0.28 2.00 16 20 C -0.06 -0.79 5.74 -20.03 -0.11 -0.91 16 21 C -0.06 -0.42 8.88 22.46 0.20 -0.22 16 22 C -0.20 -1.03 9.02 22.33 0.20 -0.83 16 23 C 0.13 1.06 6.69 22.55 0.15 1.21 16 24 O -0.33 -2.31 10.49 -92.27 -0.97 -3.28 16 25 C 0.02 -0.03 9.81 113.37 1.11 1.08 16 26 C -0.16 -1.64 9.97 22.33 0.22 -1.42 16 27 C -0.06 -0.78 9.77 22.46 0.22 -0.56 16 28 N -0.29 -4.67 11.67 -48.15 -0.56 -5.23 16 29 C -0.12 0.68 7.39 31.12 0.23 0.91 16 30 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.05 -0.17 8.14 -2.39 -0.02 -0.18 16 33 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H 0.05 -0.10 7.85 -2.39 -0.02 -0.12 16 35 H 0.09 0.14 7.90 -2.39 -0.02 0.12 16 36 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.42 -4.14 8.70 -92.71 -0.81 -4.95 16 38 H 0.14 -0.89 8.14 -2.39 -0.02 -0.91 16 39 H 0.17 -2.00 8.07 -2.39 -0.02 -2.02 16 40 H 0.20 -0.09 6.35 -2.91 -0.02 -0.10 16 41 H 0.08 -0.02 5.57 -2.39 -0.01 -0.04 16 42 H 0.40 -3.21 8.74 -74.06 -0.65 -3.86 16 43 H -0.29 -0.91 7.11 99.48 0.71 -0.20 16 44 H -0.28 -0.41 7.04 99.48 0.70 0.29 16 45 H 0.14 0.50 6.22 -2.91 -0.02 0.48 16 46 H 0.16 -0.20 6.28 -2.91 -0.02 -0.22 16 47 H 0.07 -0.32 7.66 -2.39 -0.02 -0.34 16 48 H 0.12 -0.61 8.14 -2.38 -0.02 -0.63 16 49 H 0.07 -0.23 7.65 -2.39 -0.02 -0.25 16 50 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 51 H 0.12 1.51 8.06 -2.90 -0.02 1.48 16 52 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 53 H 0.11 -0.74 8.10 -2.39 -0.02 -0.76 16 Total: 0.00 -36.06 439.60 -0.21 -36.27 By element: Atomic # 1 Polarization: -11.86 SS G_CDS: -0.47 Total: -12.33 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 6.75 Total: 5.78 kcal Atomic # 7 Polarization: -6.10 SS G_CDS: -4.07 Total: -10.18 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -4.52 Total: -19.53 kcal Atomic # 14 Polarization: -2.13 SS G_CDS: 2.11 Total: -0.02 kcal Total: -36.06 -0.21 -36.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535612_12622750.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.657 kcal (2) G-P(sol) polarization free energy of solvation -36.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds