Wall clock time and date at job start Sun Mar 7 2021 04:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00009 * 2 1 4 4 C 1.52995 * 109.47026 * 180.02562 * 3 2 1 5 5 H 1.08995 * 112.91121 * 43.74915 * 4 3 2 6 6 C 1.53785 * 113.61328 * 175.00305 * 4 3 2 7 7 C 1.53781 * 87.08277 * 139.98018 * 6 4 3 8 8 H 1.09002 * 113.61228 * 220.01683 * 7 6 4 9 9 N 1.46500 * 113.61711 * 89.19510 * 7 6 4 10 10 C 1.34778 * 119.99919 * 156.52821 * 9 7 6 11 11 O 1.21582 * 119.99933 * 0.02562 * 10 9 7 12 12 C 1.47650 * 119.99927 * 180.02562 * 10 9 7 13 13 C 1.40165 * 119.97620 * 359.72544 * 12 10 9 14 14 C 1.36353 * 120.67434 * 179.75409 * 13 12 10 15 15 C 1.39329 * 120.23362 * 0.52148 * 14 13 12 16 16 N 1.37405 * 133.25552 * 179.71221 * 15 14 13 17 17 C 1.36864 * 109.98131 * 180.02562 * 16 15 14 18 18 C 1.34191 * 109.96968 * 0.02562 * 17 16 15 19 19 C 1.50702 * 126.54266 * 180.02562 * 18 17 16 20 20 O 1.42900 * 109.46611 * 104.97228 * 19 18 17 21 21 Si 1.86294 * 109.46897 * 344.97389 * 19 18 17 22 22 C 1.40909 * 119.64072 * 359.74151 * 15 14 13 23 23 C 1.39193 * 119.97577 * 179.97438 * 12 10 9 24 24 C 1.53776 * 113.61424 * 272.49426 * 4 3 2 25 25 H 1.08998 * 109.47473 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47139 * 300.00244 * 1 2 3 27 27 H 1.09005 * 109.47066 * 60.00014 * 1 2 3 28 28 H 1.09000 * 109.47456 * 60.00070 * 3 2 1 29 29 H 1.09003 * 109.47293 * 299.99737 * 3 2 1 30 30 H 1.08993 * 113.61827 * 25.42377 * 6 4 3 31 31 H 1.09006 * 113.60734 * 254.52405 * 6 4 3 32 32 H 0.96998 * 119.99853 * 336.53388 * 9 7 6 33 33 H 1.07997 * 119.66556 * 0.02562 * 13 12 10 34 34 H 1.08002 * 119.88650 * 180.24348 * 14 13 12 35 35 H 0.97003 * 125.00708 * 0.04967 * 16 15 14 36 36 H 1.08003 * 125.01576 * 180.02562 * 17 16 15 37 37 H 1.08998 * 109.47286 * 224.97295 * 19 18 17 38 38 H 0.96698 * 114.00404 * 299.99839 * 20 19 18 39 39 H 1.48503 * 110.00022 * 180.02562 * 21 19 18 40 40 H 1.48505 * 110.00405 * 301.31724 * 21 19 18 41 41 H 1.07996 * 120.29938 * 0.02562 * 23 12 10 42 42 H 1.09003 * 113.61687 * 105.46892 * 24 4 3 43 43 H 1.09009 * 113.61565 * 334.57240 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9009 0.4282 -0.6952 6 6 4.2603 2.5353 -0.1234 7 6 5.2679 1.9991 0.9072 8 1 5.5799 2.7428 1.6405 9 7 6.3966 1.2834 0.3072 10 6 7.5593 1.1737 0.9799 11 8 7.6713 1.6682 2.0849 12 6 8.6970 0.4528 0.3749 13 6 8.5655 -0.1221 -0.8966 14 6 9.6085 -0.7867 -1.4708 15 6 10.8192 -0.9119 -0.7927 16 7 12.0149 -1.5129 -1.1041 17 6 12.9032 -1.3473 -0.0761 18 6 12.3302 -0.6498 0.9169 19 6 12.9711 -0.2558 2.2226 20 8 13.2951 1.1357 2.1933 21 14 14.5259 -1.2502 2.4762 22 6 10.9624 -0.3430 0.4885 23 6 9.8977 0.3402 1.0699 24 6 4.1452 1.0745 1.4067 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.6739 3.3800 0.2377 31 1 4.6941 2.7100 -1.1081 32 1 6.3071 0.8886 -0.5743 33 1 7.6299 -0.0341 -1.4288 34 1 9.4943 -1.2214 -2.4529 35 1 12.2021 -1.9847 -1.9307 36 1 13.9159 -1.7225 -0.0656 37 1 12.2779 -0.4503 3.0410 38 1 13.9094 1.3818 1.4882 39 1 15.1673 -0.8714 3.7609 40 1 14.2069 -2.7006 2.4766 41 1 10.0021 0.7778 2.0517 42 1 4.4861 0.0700 1.6577 43 1 3.5272 1.5199 2.1865 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535612_13287722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:31:50 Heat of formation + Delta-G solvation = -26.195070 kcal Electronic energy + Delta-G solvation = -25633.520283 eV Core-core repulsion = 21839.631565 eV Total energy + Delta-G solvation = -3793.888718 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.46834 -41.39242 -39.84021 -38.29184 -37.90518 -37.40080 -34.56736 -33.26614 -30.99527 -30.54463 -29.47530 -27.00526 -26.64962 -26.47403 -25.08741 -23.49454 -23.35733 -21.80233 -20.78544 -20.30924 -19.34219 -18.51776 -17.55225 -17.40995 -17.33056 -16.98589 -16.81920 -16.39788 -16.21379 -15.96641 -15.81150 -15.55377 -15.17253 -14.98378 -14.79801 -14.72267 -14.31127 -14.08108 -13.80451 -13.72882 -13.60124 -13.45856 -12.85962 -12.62057 -12.39241 -12.36351 -12.20239 -11.93566 -11.83049 -11.59881 -11.30192 -11.14112 -10.81312 -10.59663 -10.33031 -10.17030 -9.34012 -8.81284 -5.01288 -0.18205 0.18987 1.35371 1.52599 1.70784 1.79598 2.01540 2.04301 2.12924 2.78586 2.86030 3.44819 3.59923 3.60152 3.63302 3.69312 3.83277 3.85271 3.91840 3.95632 4.13379 4.34124 4.35978 4.38850 4.44313 4.47121 4.53004 4.58866 4.59581 4.62358 4.69938 4.74217 4.76951 4.83181 4.84536 4.98699 4.99702 5.08538 5.16727 5.25322 5.32988 5.46377 5.56864 5.57409 5.97498 6.23274 6.45918 6.60534 6.87907 7.13845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.066 3.934 4 C -0.102 4.102 5 H 0.100 0.900 6 C -0.119 4.119 7 C 0.110 3.890 8 H 0.083 0.917 9 N -0.694 5.694 10 C 0.562 3.438 11 O -0.589 6.589 12 C -0.179 4.179 13 C -0.068 4.068 14 C -0.124 4.124 15 C 0.111 3.889 16 N -0.571 5.571 17 C 0.088 3.912 18 C -0.227 4.227 19 C -0.055 4.055 20 O -0.565 6.565 21 Si 0.814 3.186 22 C -0.130 4.130 23 C -0.024 4.024 24 C -0.147 4.147 25 H 0.090 0.910 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.415 0.585 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.440 0.560 36 H 0.222 0.778 37 H 0.082 0.918 38 H 0.394 0.606 39 H -0.308 1.308 40 H -0.279 1.279 41 H 0.104 0.896 42 H 0.056 0.944 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.667 -2.580 -10.416 10.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.010 4.010 4 C -0.121 4.121 5 H 0.119 0.881 6 C -0.157 4.157 7 C 0.005 3.995 8 H 0.102 0.898 9 N -0.346 5.346 10 C 0.351 3.649 11 O -0.470 6.470 12 C -0.184 4.184 13 C -0.088 4.088 14 C -0.144 4.144 15 C 0.001 3.999 16 N -0.174 5.174 17 C -0.039 4.039 18 C -0.234 4.234 19 C -0.163 4.163 20 O -0.373 6.373 21 Si 0.718 3.282 22 C -0.135 4.135 23 C -0.044 4.044 24 C -0.185 4.185 25 H 0.109 0.891 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.129 0.871 31 H 0.112 0.888 32 H 0.253 0.747 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.281 0.719 36 H 0.238 0.762 37 H 0.100 0.900 38 H 0.243 0.757 39 H -0.236 1.236 40 H -0.206 1.206 41 H 0.122 0.878 42 H 0.074 0.926 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.893 -3.024 -8.778 9.475 hybrid contribution -1.109 0.102 0.190 1.129 sum 0.784 -2.922 -8.588 9.105 Atomic orbital electron populations 1.22882 0.79887 1.03532 1.00766 1.87851 1.21063 1.29234 1.95593 1.22674 0.92991 0.84294 1.01088 1.22558 0.93090 0.98901 0.97513 0.88139 1.23272 0.95565 0.96903 0.99931 1.21881 0.85402 0.94935 0.97314 0.89837 1.45418 1.11143 1.56515 1.21489 1.18525 0.83210 0.78742 0.84385 1.90761 1.83942 1.50278 1.22045 1.19556 0.93996 1.06859 0.97961 1.20866 0.99809 0.95524 0.92614 1.20070 0.89645 1.03049 1.01650 1.18619 0.89117 0.97427 0.94692 1.41781 1.09002 1.47724 1.18932 1.22249 0.96668 0.98663 0.86344 1.20857 0.93774 1.09351 0.99445 1.24772 1.08010 0.88715 0.94797 1.86487 1.69359 1.23647 1.57797 0.94046 0.76065 0.74605 0.83456 1.19231 0.94993 1.03462 0.95771 1.20586 0.91103 0.94310 0.98368 1.23500 0.97323 0.99989 0.97709 0.89140 0.93498 0.93032 0.92600 0.91823 0.87119 0.88750 0.74661 0.82365 0.81933 0.71863 0.76211 0.90019 0.75667 1.23643 1.20618 0.87776 0.92560 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 11.01 113.37 1.25 1.23 16 2 O -0.42 -1.79 10.70 -148.98 -1.59 -3.38 16 3 C 0.07 -0.05 5.77 71.98 0.42 0.37 16 4 C -0.10 0.16 3.90 -10.27 -0.04 0.12 16 5 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 6 C -0.12 0.46 7.38 31.12 0.23 0.69 16 7 C 0.11 0.30 4.30 45.52 0.20 0.49 16 8 H 0.08 0.62 7.50 -2.39 -0.02 0.61 16 9 N -0.69 -2.04 5.22 -443.08 -2.31 -4.35 16 10 C 0.56 6.22 7.76 86.73 0.67 6.90 16 11 O -0.59 -12.13 15.95 -3.98 -0.06 -12.19 16 12 C -0.18 -1.44 5.87 -20.09 -0.12 -1.55 16 13 C -0.07 0.02 9.46 22.30 0.21 0.23 16 14 C -0.12 0.29 10.00 22.09 0.22 0.51 16 15 C 0.11 0.08 7.27 39.19 0.28 0.36 16 16 N -0.57 3.52 6.05 -187.47 -1.13 2.39 16 17 C 0.09 -0.51 10.43 82.98 0.87 0.36 16 18 C -0.23 -0.52 5.58 -18.61 -0.10 -0.62 16 19 C -0.05 -0.18 3.06 71.24 0.22 0.04 16 20 O -0.56 -2.87 12.88 -148.98 -1.92 -4.79 16 21 Si 0.81 -2.32 30.76 68.60 2.11 -0.21 16 22 C -0.13 -0.92 6.34 -20.21 -0.13 -1.05 16 23 C -0.02 -0.28 9.64 22.74 0.22 -0.06 16 24 C -0.15 -0.37 7.43 31.12 0.23 -0.14 16 25 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 26 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 27 H 0.05 -0.16 8.14 -2.38 -0.02 -0.17 16 28 H 0.06 -0.09 7.84 -2.39 -0.02 -0.11 16 29 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.11 -0.65 8.10 -2.39 -0.02 -0.67 16 31 H 0.09 -0.61 8.14 -2.38 -0.02 -0.63 16 32 H 0.41 -1.58 6.71 -92.71 -0.62 -2.21 16 33 H 0.16 -1.19 6.36 -2.91 -0.02 -1.21 16 34 H 0.16 -1.54 8.06 -2.91 -0.02 -1.57 16 35 H 0.44 -5.94 8.96 -92.71 -0.83 -6.77 16 36 H 0.22 -3.33 6.35 -2.91 -0.02 -3.35 16 37 H 0.08 0.66 7.96 -2.39 -0.02 0.64 16 38 H 0.39 -1.85 8.70 -74.06 -0.64 -2.49 16 39 H -0.31 -1.86 7.11 99.48 0.71 -1.15 16 40 H -0.28 -0.28 7.11 99.48 0.71 0.42 16 41 H 0.10 1.76 7.64 -2.91 -0.02 1.74 16 42 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.09 0.18 7.90 -2.38 -0.02 0.16 16 Total: 0.00 -30.55 360.07 -1.29 -31.84 By element: Atomic # 1 Polarization: -16.19 SS G_CDS: -1.00 Total: -17.18 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 4.62 Total: 7.88 kcal Atomic # 7 Polarization: 1.49 SS G_CDS: -3.45 Total: -1.96 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -3.58 Total: -20.37 kcal Atomic # 14 Polarization: -2.32 SS G_CDS: 2.11 Total: -0.21 kcal Total: -30.55 -1.29 -31.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535612_13287722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.645 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds