Wall clock time and date at job start Sun Mar 7 2021 04:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 113.99905 * 2 1 4 4 C 1.53005 * 109.47252 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.84788 * 43.80143 * 4 3 2 6 6 C 1.53780 * 113.61271 * 174.99601 * 4 3 2 7 7 C 1.53784 * 87.07743 * 140.06345 * 6 4 3 8 8 H 1.09004 * 113.61806 * 219.93430 * 7 6 4 9 9 N 1.46499 * 113.61653 * 89.11507 * 7 6 4 10 10 C 1.34777 * 120.00195 * 156.52536 * 9 7 6 11 11 O 1.21613 * 119.99966 * 0.02562 * 10 9 7 12 12 C 1.47380 * 119.99852 * 180.27819 * 10 9 7 13 13 C 1.36415 * 127.19070 * 179.43401 * 12 10 9 14 14 C 1.50699 * 125.80164 * 0.04022 * 13 12 10 15 15 O 1.33652 * 108.39832 * 179.89300 * 13 12 10 16 16 C 1.34215 * 110.90593 * 0.39018 * 15 13 12 17 17 C 1.50705 * 125.43673 * 179.72372 * 16 15 13 18 18 O 1.42903 * 109.46911 * 120.04513 * 17 16 15 19 19 Si 1.86296 * 109.47297 * 0.04320 * 17 16 15 20 20 C 1.34171 * 109.12652 * 359.76006 * 16 15 13 21 21 C 1.53782 * 87.17674 * 334.52530 * 7 6 4 22 22 H 1.09004 * 109.47194 * 60.00602 * 1 2 3 23 23 H 1.09002 * 109.46986 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47581 * 300.00153 * 1 2 3 25 25 H 1.08997 * 109.47578 * 59.99914 * 3 2 1 26 26 H 1.09008 * 109.47046 * 299.99796 * 3 2 1 27 27 H 1.08997 * 113.61813 * 25.51807 * 6 4 3 28 28 H 1.08992 * 113.69102 * 254.61778 * 6 4 3 29 29 H 0.97000 * 120.00069 * 336.53264 * 9 7 6 30 30 H 1.09005 * 109.47611 * 90.00024 * 14 13 12 31 31 H 1.09007 * 109.46935 * 209.99779 * 14 13 12 32 32 H 1.08996 * 109.46976 * 329.99828 * 14 13 12 33 33 H 1.09000 * 109.46804 * 240.03927 * 17 16 15 34 34 H 0.96702 * 113.99797 * 180.02562 * 18 17 16 35 35 H 1.48502 * 110.00204 * 59.99706 * 19 17 16 36 36 H 1.48494 * 110.00050 * 181.31777 * 19 17 16 37 37 H 1.08004 * 127.02539 * 179.97438 * 20 16 15 38 38 H 1.08998 * 113.61951 * 140.01850 * 21 7 6 39 39 H 1.09002 * 113.61372 * 270.92862 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8998 0.4287 -0.6962 6 6 4.2602 2.5354 -0.1236 7 6 5.2690 1.9985 0.9055 8 1 5.5832 2.7420 1.6380 9 7 6.3959 1.2814 0.3037 10 6 7.5597 1.1706 0.9743 11 8 7.6742 1.6656 2.0793 12 6 8.6953 0.4545 0.3663 13 6 9.9341 0.2647 0.9049 14 6 10.3945 0.7578 2.2524 15 8 10.6692 -0.4357 0.0357 16 6 9.9647 -0.7141 -1.0722 17 6 10.4769 -1.4818 -2.2636 18 8 9.6739 -2.6473 -2.4604 19 14 12.2441 -1.9888 -1.9626 20 6 8.7317 -0.1991 -0.9502 21 6 4.1482 1.0735 1.4084 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.6886 1.8464 0.8899 26 1 1.6885 1.8464 -0.8901 27 1 3.6743 3.3800 0.2390 28 1 4.6931 2.7121 -1.1081 29 1 6.3045 0.8864 -0.5775 30 1 10.1843 0.0006 3.0078 31 1 11.4667 0.9520 2.2213 32 1 9.8658 1.6774 2.5028 33 1 10.4259 -0.8513 -3.1513 34 1 9.9471 -3.1909 -3.2121 35 1 12.3271 -2.8488 -0.7548 36 1 12.7711 -2.7191 -3.1432 37 1 7.9299 -0.2533 -1.6717 38 1 4.4902 0.0694 1.6593 39 1 3.5316 1.5191 2.1890 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535612_13308374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:32:07 Heat of formation + Delta-G solvation = -68.373290 kcal Electronic energy + Delta-G solvation = -22064.571980 eV Core-core repulsion = 18555.814036 eV Total energy + Delta-G solvation = -3508.757944 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.67216 -41.16123 -39.47630 -38.18794 -38.10347 -34.56411 -33.80868 -33.09414 -29.92286 -29.27897 -27.05741 -26.68198 -25.80889 -24.40565 -23.33125 -22.18702 -20.66382 -20.13328 -18.91288 -18.40586 -17.44419 -17.27924 -17.08314 -16.92069 -16.73768 -16.28920 -16.01080 -15.75292 -15.56795 -15.09410 -14.66620 -14.33424 -14.14324 -13.98790 -13.97546 -13.82774 -13.66142 -13.48337 -13.12070 -12.85315 -12.60151 -12.39991 -12.09390 -11.86500 -11.58260 -11.29165 -10.97314 -10.81825 -10.64949 -10.59360 -10.00024 -9.47553 -5.01837 0.36269 0.86589 1.12275 1.36802 1.67313 1.92317 2.17814 2.41022 2.74990 3.19454 3.42655 3.43376 3.57274 3.75856 3.79583 3.86748 3.93357 4.11150 4.22458 4.28893 4.33646 4.39758 4.46799 4.52896 4.55527 4.61123 4.65324 4.68630 4.70357 4.76732 4.79572 4.90451 5.05613 5.07614 5.14650 5.21317 5.28193 5.62998 6.00180 6.20335 6.23052 6.55552 7.29887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.069 3.931 4 C -0.110 4.110 5 H 0.098 0.902 6 C -0.137 4.137 7 C 0.122 3.878 8 H 0.106 0.894 9 N -0.707 5.707 10 C 0.597 3.403 11 O -0.538 6.538 12 C -0.253 4.253 13 C 0.097 3.903 14 C -0.086 4.086 15 O -0.167 6.167 16 C -0.009 4.009 17 C -0.037 4.037 18 O -0.533 6.533 19 Si 0.699 3.301 20 C -0.146 4.146 21 C -0.143 4.143 22 H 0.041 0.959 23 H 0.086 0.914 24 H 0.041 0.959 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.402 0.598 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.389 0.611 35 H -0.252 1.252 36 H -0.252 1.252 37 H 0.157 0.843 38 H 0.074 0.926 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.152 2.189 -3.920 4.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.310 6.310 3 C -0.007 4.007 4 C -0.129 4.129 5 H 0.116 0.884 6 C -0.175 4.175 7 C 0.016 3.984 8 H 0.124 0.876 9 N -0.357 5.357 10 C 0.386 3.614 11 O -0.416 6.416 12 C -0.258 4.258 13 C 0.044 3.956 14 C -0.142 4.142 15 O -0.064 6.064 16 C -0.057 4.057 17 C -0.146 4.146 18 O -0.342 6.342 19 Si 0.598 3.402 20 C -0.165 4.165 21 C -0.182 4.182 22 H 0.060 0.940 23 H 0.105 0.895 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.117 0.883 28 H 0.096 0.904 29 H 0.236 0.764 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.115 0.885 34 H 0.238 0.762 35 H -0.175 1.175 36 H -0.176 1.176 37 H 0.175 0.825 38 H 0.093 0.907 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.894 1.856 -2.509 3.246 hybrid contribution -1.314 -0.829 -1.319 2.038 sum -0.420 1.026 -3.828 3.985 Atomic orbital electron populations 1.22759 0.80863 1.02963 1.00018 1.87896 1.19797 1.27881 1.95407 1.22563 0.93010 0.84880 1.00258 1.22657 0.93133 0.98275 0.98795 0.88405 1.23326 0.97003 0.97134 1.00080 1.21804 0.85238 0.94978 0.96353 0.87554 1.45429 1.11900 1.57112 1.21308 1.17137 0.81396 0.78496 0.84395 1.90773 1.82860 1.48446 1.19551 1.21077 0.95910 1.11192 0.97590 1.22897 0.88754 0.92017 0.91916 1.20707 1.03011 1.03348 0.87139 1.83644 1.41474 1.57449 1.23867 1.20928 0.92082 1.04174 0.88531 1.23780 1.07211 0.89263 0.94343 1.86559 1.55772 1.36872 1.55012 0.94437 0.76133 0.88493 0.81167 1.22518 0.97196 1.00293 0.96512 1.23533 0.97091 1.01119 0.96474 0.94040 0.89519 0.93995 0.92979 0.93144 0.88303 0.90355 0.76368 0.88981 0.89848 0.87041 0.88518 0.76200 1.17535 1.17649 0.82528 0.90723 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 11.01 101.05 1.11 1.11 16 2 O -0.39 -0.92 10.70 -35.23 -0.38 -1.30 16 3 C 0.07 0.00 5.78 37.16 0.21 0.22 16 4 C -0.11 0.05 3.90 -89.66 -0.35 -0.29 16 5 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 6 C -0.14 0.24 7.38 -25.92 -0.19 0.05 16 7 C 0.12 0.04 4.30 -67.12 -0.29 -0.25 16 8 H 0.11 0.16 7.50 -51.93 -0.39 -0.23 16 9 N -0.71 -0.61 5.26 -54.10 -0.28 -0.90 16 10 C 0.60 2.08 7.81 -12.54 -0.10 1.98 16 11 O -0.54 -3.25 14.47 5.27 0.08 -3.18 16 12 C -0.25 -0.72 6.31 -103.27 -0.65 -1.37 16 13 C 0.10 0.24 7.37 -34.97 -0.26 -0.01 16 14 C -0.09 -0.04 9.89 36.00 0.36 0.32 16 15 O -0.17 -0.40 8.89 7.65 0.07 -0.33 16 16 C -0.01 -0.02 6.24 -35.74 -0.22 -0.24 16 17 C -0.04 0.03 2.97 36.01 0.11 0.13 16 18 O -0.53 -0.11 12.84 -35.23 -0.45 -0.56 16 19 Si 0.70 -0.67 32.09 -169.99 -5.45 -6.12 16 20 C -0.15 -0.23 10.46 -37.46 -0.39 -0.62 16 21 C -0.14 -0.06 7.45 -25.77 -0.19 -0.26 16 22 H 0.04 -0.04 8.14 -51.93 -0.42 -0.47 16 23 H 0.09 -0.08 8.14 -51.93 -0.42 -0.50 16 24 H 0.04 -0.04 8.14 -51.93 -0.42 -0.46 16 25 H 0.05 -0.04 7.86 -51.93 -0.41 -0.44 16 26 H 0.05 -0.04 8.14 -51.92 -0.42 -0.47 16 27 H 0.10 -0.26 8.10 -51.93 -0.42 -0.68 16 28 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 29 H 0.40 -0.43 7.88 -40.82 -0.32 -0.75 16 30 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 31 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 32 H 0.11 0.16 6.49 -51.93 -0.34 -0.18 16 33 H 0.10 -0.32 7.96 -51.93 -0.41 -0.73 16 34 H 0.39 -1.63 8.74 45.56 0.40 -1.23 16 35 H -0.25 -0.77 7.11 56.52 0.40 -0.37 16 36 H -0.25 -0.03 7.11 56.52 0.40 0.37 16 37 H 0.16 -0.09 7.74 -52.48 -0.41 -0.50 16 38 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.09 -0.01 7.91 -51.93 -0.41 -0.42 16 LS Contribution 332.76 15.07 5.01 5.01 Total: 0.00 -7.97 332.76 -7.97 -15.94 By element: Atomic # 1 Polarization: -3.62 SS G_CDS: -5.71 Total: -9.33 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -0.85 Total: 0.76 kcal Atomic # 7 Polarization: -0.61 SS G_CDS: -0.28 Total: -0.90 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.69 Total: -5.37 kcal Atomic # 14 Polarization: -0.67 SS G_CDS: -5.45 Total: -6.12 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -7.97 -7.97 -15.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535612_13308374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.429 kcal (2) G-P(sol) polarization free energy of solvation -7.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds