Wall clock time and date at job start Sun Mar 7 2021 04:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 113.99899 * 2 1 4 4 C 1.53005 * 109.47296 * 179.97438 * 3 2 1 5 5 H 1.09000 * 112.90498 * 43.75247 * 4 3 2 6 6 C 1.53782 * 113.61705 * 175.00419 * 4 3 2 7 7 C 1.53783 * 87.08264 * 139.98097 * 6 4 3 8 8 H 1.08999 * 113.61081 * 219.93461 * 7 6 4 9 9 N 1.46492 * 113.61332 * 89.11703 * 7 6 4 10 10 C 1.34779 * 120.00169 * 155.00300 * 9 7 6 11 11 O 1.21592 * 119.99391 * 359.97438 * 10 9 7 12 12 C 1.47524 * 120.00229 * 179.97438 * 10 9 7 13 13 C 1.40141 * 120.19417 * 180.02562 * 12 10 9 14 14 O 1.35655 * 120.14773 * 359.97438 * 13 12 10 15 15 C 1.38708 * 119.70106 * 179.74999 * 13 12 10 16 16 C 1.38052 * 120.08490 * 0.47855 * 15 13 12 17 17 C 1.50693 * 119.80618 * 179.76734 * 16 15 13 18 18 O 1.42907 * 109.47661 * 299.73129 * 17 16 15 19 19 Si 1.86298 * 109.47618 * 179.72819 * 17 16 15 20 20 C 1.38548 * 120.39139 * 359.49791 * 16 15 13 21 21 C 1.37792 * 120.29671 * 0.27405 * 20 16 15 22 22 C 1.53781 * 87.08009 * 334.56502 * 7 6 4 23 23 H 1.09002 * 109.46934 * 60.00188 * 1 2 3 24 24 H 1.08999 * 109.47093 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47572 * 299.99457 * 1 2 3 26 26 H 1.09007 * 109.46873 * 60.00461 * 3 2 1 27 27 H 1.09000 * 109.47512 * 300.00547 * 3 2 1 28 28 H 1.08998 * 113.60963 * 25.43141 * 6 4 3 29 29 H 1.08999 * 113.68846 * 254.54300 * 6 4 3 30 30 H 0.97003 * 120.00288 * 334.99864 * 9 7 6 31 31 H 0.96697 * 113.99789 * 89.99812 * 14 13 12 32 32 H 1.08005 * 119.95813 * 180.25119 * 15 13 12 33 33 H 1.09000 * 109.46936 * 59.72752 * 17 16 15 34 34 H 0.96697 * 114.00527 * 179.97438 * 18 17 16 35 35 H 1.48506 * 109.99834 * 298.68714 * 19 17 16 36 36 H 1.48502 * 110.00011 * 59.99978 * 19 17 16 37 37 H 1.07998 * 119.85286 * 180.24780 * 20 16 15 38 38 H 1.08004 * 120.04026 * 179.97438 * 21 20 16 39 39 H 1.09006 * 113.61314 * 139.97862 * 22 7 6 40 40 H 1.09001 * 113.61642 * 270.88578 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9014 0.4281 -0.6934 6 6 4.2604 2.5354 -0.1220 7 6 5.2671 1.9995 0.9096 8 1 5.5796 2.7438 1.6421 9 7 6.3953 1.2821 0.3108 10 6 7.5674 1.1984 0.9707 11 8 7.6886 1.7188 2.0629 12 6 8.7034 0.4754 0.3680 13 6 9.9238 0.3855 1.0508 14 8 10.0668 0.9635 2.2697 15 6 10.9835 -0.3012 0.4768 16 6 10.8382 -0.8845 -0.7660 17 6 11.9953 -1.6245 -1.3860 18 8 13.0978 -0.7308 -1.5534 19 14 11.4840 -2.2977 -3.0462 20 6 9.6332 -0.7982 -1.4442 21 6 8.5686 -0.1239 -0.8868 22 6 4.1441 1.0751 1.4087 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.6885 1.8463 0.8901 27 1 1.6885 1.8464 -0.8899 28 1 3.6735 3.3801 0.2386 29 1 4.6952 2.7112 -1.1059 30 1 6.2987 0.8672 -0.5607 31 1 9.8371 0.3841 3.0091 32 1 11.9247 -0.3766 1.0012 33 1 12.2905 -2.4478 -0.7354 34 1 13.8798 -1.1404 -1.9480 35 1 10.3589 -3.2529 -2.8823 36 1 11.0792 -1.1851 -3.9426 37 1 9.5279 -1.2611 -2.4142 38 1 7.6312 -0.0589 -1.4193 39 1 4.4847 0.0706 1.6601 40 1 3.5255 1.5207 2.1877 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535612_13422076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:32:13 Heat of formation + Delta-G solvation = -92.579105 kcal Electronic energy + Delta-G solvation = -23319.968392 eV Core-core repulsion = 19681.934665 eV Total energy + Delta-G solvation = -3638.033727 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.76446 -40.76053 -39.34549 -38.42518 -38.04242 -37.23042 -34.54656 -32.73640 -31.15420 -29.76682 -27.63608 -26.95474 -26.65092 -24.09105 -23.88730 -23.11918 -21.75075 -20.33060 -19.30168 -18.76376 -18.46798 -17.58936 -17.43208 -16.97370 -16.72817 -16.62712 -16.44224 -16.07732 -15.81239 -15.56160 -15.30994 -14.98697 -14.51934 -14.29432 -14.23812 -13.93002 -13.80486 -13.54534 -13.33713 -13.05088 -12.87790 -12.44499 -12.43930 -12.11262 -11.91886 -11.76044 -11.61497 -11.33956 -10.78668 -10.63360 -10.53403 -10.13437 -10.01454 -9.78795 -5.07193 -0.42310 0.08209 1.14450 1.52767 1.75539 1.85413 2.01887 2.54932 2.70687 3.03751 3.24191 3.38065 3.51789 3.52178 3.64348 3.66480 3.78481 3.87749 3.99843 4.18170 4.20076 4.24307 4.29853 4.36164 4.48923 4.50870 4.52818 4.61991 4.65289 4.67796 4.73230 4.76626 4.91476 4.99130 5.00358 5.09312 5.13261 5.18444 5.49636 5.55726 6.16008 6.43951 6.49920 6.70725 7.21641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.391 6.391 3 C 0.069 3.931 4 C -0.110 4.110 5 H 0.097 0.903 6 C -0.138 4.138 7 C 0.121 3.879 8 H 0.108 0.892 9 N -0.712 5.712 10 C 0.563 3.437 11 O -0.515 6.515 12 C -0.165 4.165 13 C 0.176 3.824 14 O -0.474 6.474 15 C -0.125 4.125 16 C -0.031 4.031 17 C -0.079 4.079 18 O -0.543 6.543 19 Si 0.687 3.313 20 C -0.143 4.143 21 C -0.063 4.063 22 C -0.143 4.143 23 H 0.041 0.959 24 H 0.087 0.913 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.399 0.601 31 H 0.398 0.602 32 H 0.143 0.857 33 H 0.080 0.920 34 H 0.385 0.615 35 H -0.253 1.253 36 H -0.249 1.249 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.074 0.926 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.277 -3.988 -3.770 5.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.310 6.310 3 C -0.007 4.007 4 C -0.129 4.129 5 H 0.116 0.884 6 C -0.176 4.176 7 C 0.015 3.985 8 H 0.125 0.875 9 N -0.364 5.364 10 C 0.350 3.650 11 O -0.390 6.390 12 C -0.169 4.169 13 C 0.129 3.871 14 O -0.286 6.286 15 C -0.144 4.144 16 C -0.031 4.031 17 C -0.189 4.189 18 O -0.350 6.350 19 Si 0.588 3.412 20 C -0.160 4.160 21 C -0.081 4.081 22 C -0.181 4.181 23 H 0.060 0.940 24 H 0.105 0.895 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.235 0.765 31 H 0.257 0.743 32 H 0.161 0.839 33 H 0.098 0.902 34 H 0.233 0.767 35 H -0.178 1.178 36 H -0.173 1.173 37 H 0.144 0.856 38 H 0.151 0.849 39 H 0.093 0.907 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.980 -2.928 -3.591 4.736 hybrid contribution -0.650 -0.206 0.280 0.737 sum -1.630 -3.134 -3.312 4.842 Atomic orbital electron populations 1.22761 0.80812 1.02980 1.00054 1.87887 1.19843 1.27871 1.95418 1.22562 0.92943 0.84896 1.00323 1.22611 0.93226 0.98272 0.98744 0.88444 1.23346 0.97019 0.97180 1.00086 1.21820 0.85150 0.95049 0.96467 0.87450 1.45577 1.11504 1.56776 1.22531 1.17996 0.81974 0.79921 0.85081 1.90834 1.82697 1.45663 1.19845 1.20386 0.94660 1.04502 0.97344 1.18483 0.90405 0.90651 0.87542 1.84769 1.89248 1.41529 1.13013 1.21328 0.99458 0.97533 0.96082 1.19436 0.93426 0.96549 0.93731 1.24776 0.88950 0.95152 1.10017 1.86501 1.24413 1.38117 1.85966 0.95110 0.86171 0.81875 0.78040 1.20797 0.93516 1.01871 0.99852 1.21083 0.98719 0.94816 0.93513 1.23488 0.97060 1.01034 0.96544 0.94020 0.89496 0.93972 0.92945 0.93107 0.88245 0.90364 0.76537 0.74329 0.83932 0.90186 0.76671 1.17757 1.17306 0.85559 0.84878 0.90747 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 11.01 101.05 1.11 1.10 16 2 O -0.39 -0.77 10.70 -35.23 -0.38 -1.15 16 3 C 0.07 -0.02 5.78 37.16 0.21 0.20 16 4 C -0.11 0.09 3.89 -89.80 -0.35 -0.26 16 5 H 0.10 -0.07 8.14 -51.93 -0.42 -0.49 16 6 C -0.14 0.23 7.39 -25.92 -0.19 0.04 16 7 C 0.12 0.04 4.32 -67.12 -0.29 -0.25 16 8 H 0.11 0.21 7.46 -51.93 -0.39 -0.17 16 9 N -0.71 -0.46 5.21 -54.06 -0.28 -0.74 16 10 C 0.56 2.05 7.76 -12.47 -0.10 1.95 16 11 O -0.51 -3.61 14.76 -16.59 -0.24 -3.85 16 12 C -0.17 -0.45 5.89 -104.85 -0.62 -1.06 16 13 C 0.18 0.57 6.72 -38.69 -0.26 0.31 16 14 O -0.47 -1.76 11.58 -40.54 -0.47 -2.23 16 15 C -0.13 -0.27 9.53 -39.48 -0.38 -0.65 16 16 C -0.03 -0.05 5.43 -104.58 -0.57 -0.62 16 17 C -0.08 0.07 2.80 36.00 0.10 0.17 16 18 O -0.54 0.20 12.74 -35.23 -0.45 -0.25 16 19 Si 0.69 -1.42 29.77 -169.99 -5.06 -6.48 16 20 C -0.14 -0.16 8.64 -39.63 -0.34 -0.51 16 21 C -0.06 -0.04 9.53 -39.20 -0.37 -0.41 16 22 C -0.14 -0.01 7.43 -25.92 -0.19 -0.20 16 23 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 24 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 25 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 26 H 0.05 -0.05 7.84 -51.93 -0.41 -0.45 16 27 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 28 H 0.10 -0.25 8.10 -51.93 -0.42 -0.67 16 29 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 30 H 0.40 -0.70 6.73 -40.82 -0.27 -0.97 16 31 H 0.40 -0.12 9.06 45.56 0.41 0.29 16 32 H 0.14 0.18 8.06 -52.48 -0.42 -0.25 16 33 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 34 H 0.39 -2.11 8.74 45.56 0.40 -1.71 16 35 H -0.25 -0.01 7.11 56.52 0.40 0.39 16 36 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 37 H 0.13 0.02 4.85 -52.49 -0.25 -0.24 16 38 H 0.13 -0.32 6.40 -52.48 -0.34 -0.65 16 39 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 40 H 0.09 -0.03 7.89 -51.93 -0.41 -0.44 16 LS Contribution 335.20 15.07 5.05 5.05 Total: 0.00 -9.84 335.20 -8.73 -18.57 By element: Atomic # 1 Polarization: -4.06 SS G_CDS: -4.67 Total: -8.73 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -2.23 Total: -0.18 kcal Atomic # 7 Polarization: -0.46 SS G_CDS: -0.28 Total: -0.74 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -1.54 Total: -7.48 kcal Atomic # 14 Polarization: -1.42 SS G_CDS: -5.06 Total: -6.48 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -9.84 -8.73 -18.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535612_13422076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.012 kcal (2) G-P(sol) polarization free energy of solvation -9.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds