Wall clock time and date at job start Sun Mar 7 2021 04:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 113.99899 * 2 1 4 4 C 1.53005 * 109.47296 * 179.97438 * 3 2 1 5 5 H 1.09000 * 112.90498 * 43.75247 * 4 3 2 6 6 C 1.53782 * 113.61705 * 175.00419 * 4 3 2 7 7 C 1.53783 * 87.08264 * 139.98097 * 6 4 3 8 8 H 1.08999 * 113.61081 * 219.93461 * 7 6 4 9 9 N 1.46492 * 113.61332 * 89.11703 * 7 6 4 10 10 C 1.34779 * 120.00169 * 155.00300 * 9 7 6 11 11 O 1.21592 * 119.99391 * 359.97438 * 10 9 7 12 12 C 1.47524 * 120.00229 * 179.97438 * 10 9 7 13 13 C 1.40141 * 120.19417 * 180.02562 * 12 10 9 14 14 O 1.35655 * 120.14773 * 359.97438 * 13 12 10 15 15 C 1.38708 * 119.70106 * 179.74999 * 13 12 10 16 16 C 1.38052 * 120.08490 * 0.47855 * 15 13 12 17 17 C 1.50693 * 119.80618 * 179.76734 * 16 15 13 18 18 O 1.42907 * 109.47661 * 299.73129 * 17 16 15 19 19 Si 1.86298 * 109.47618 * 179.72819 * 17 16 15 20 20 C 1.38548 * 120.39139 * 359.49791 * 16 15 13 21 21 C 1.37792 * 120.29671 * 0.27405 * 20 16 15 22 22 C 1.53781 * 87.08009 * 334.56502 * 7 6 4 23 23 H 1.09002 * 109.46934 * 60.00188 * 1 2 3 24 24 H 1.08999 * 109.47093 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47572 * 299.99457 * 1 2 3 26 26 H 1.09007 * 109.46873 * 60.00461 * 3 2 1 27 27 H 1.09000 * 109.47512 * 300.00547 * 3 2 1 28 28 H 1.08998 * 113.60963 * 25.43141 * 6 4 3 29 29 H 1.08999 * 113.68846 * 254.54300 * 6 4 3 30 30 H 0.97003 * 120.00288 * 334.99864 * 9 7 6 31 31 H 0.96697 * 113.99789 * 89.99812 * 14 13 12 32 32 H 1.08005 * 119.95813 * 180.25119 * 15 13 12 33 33 H 1.09000 * 109.46936 * 59.72752 * 17 16 15 34 34 H 0.96697 * 114.00527 * 179.97438 * 18 17 16 35 35 H 1.48506 * 109.99834 * 298.68714 * 19 17 16 36 36 H 1.48502 * 110.00011 * 59.99978 * 19 17 16 37 37 H 1.07998 * 119.85286 * 180.24780 * 20 16 15 38 38 H 1.08004 * 120.04026 * 179.97438 * 21 20 16 39 39 H 1.09006 * 113.61314 * 139.97862 * 22 7 6 40 40 H 1.09001 * 113.61642 * 270.88578 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9014 0.4281 -0.6934 6 6 4.2604 2.5354 -0.1220 7 6 5.2671 1.9995 0.9096 8 1 5.5796 2.7438 1.6421 9 7 6.3953 1.2821 0.3108 10 6 7.5674 1.1984 0.9707 11 8 7.6886 1.7188 2.0629 12 6 8.7034 0.4754 0.3680 13 6 9.9238 0.3855 1.0508 14 8 10.0668 0.9635 2.2697 15 6 10.9835 -0.3012 0.4768 16 6 10.8382 -0.8845 -0.7660 17 6 11.9953 -1.6245 -1.3860 18 8 13.0978 -0.7308 -1.5534 19 14 11.4840 -2.2977 -3.0462 20 6 9.6332 -0.7982 -1.4442 21 6 8.5686 -0.1239 -0.8868 22 6 4.1441 1.0751 1.4087 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.6885 1.8463 0.8901 27 1 1.6885 1.8464 -0.8899 28 1 3.6735 3.3801 0.2386 29 1 4.6952 2.7112 -1.1059 30 1 6.2987 0.8672 -0.5607 31 1 9.8371 0.3841 3.0091 32 1 11.9247 -0.3766 1.0012 33 1 12.2905 -2.4478 -0.7354 34 1 13.8798 -1.1404 -1.9480 35 1 10.3589 -3.2529 -2.8823 36 1 11.0792 -1.1851 -3.9426 37 1 9.5279 -1.2611 -2.4142 38 1 7.6312 -0.0589 -1.4193 39 1 4.4847 0.0706 1.6601 40 1 3.5255 1.5207 2.1877 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535612_13422076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:32:12 Heat of formation + Delta-G solvation = -95.699780 kcal Electronic energy + Delta-G solvation = -23320.103714 eV Core-core repulsion = 19681.934665 eV Total energy + Delta-G solvation = -3638.169050 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.90667 -40.80731 -39.47472 -38.49010 -38.13278 -37.24517 -34.72169 -32.80037 -31.27757 -29.75054 -27.65405 -26.93327 -26.61215 -24.16486 -23.94721 -23.18527 -21.88250 -20.38028 -19.42461 -18.88218 -18.40315 -17.68334 -17.42964 -16.96899 -16.79963 -16.65874 -16.53404 -16.18759 -15.95027 -15.65973 -15.30856 -15.04165 -14.59310 -14.29289 -14.24744 -13.99581 -13.78289 -13.50625 -13.41467 -13.11347 -12.86716 -12.46683 -12.41320 -12.12876 -11.92193 -11.83000 -11.62442 -11.33731 -11.03257 -10.62190 -10.51297 -10.23888 -10.09867 -9.89264 -4.91085 -0.55900 -0.02026 1.27661 1.55171 1.68868 1.90534 1.96744 2.41690 2.76169 2.98158 3.25903 3.40480 3.44034 3.56244 3.59637 3.69754 3.78868 3.91558 3.99110 4.12454 4.25699 4.30691 4.36370 4.44627 4.51992 4.56531 4.58679 4.62333 4.65613 4.71147 4.76967 4.81781 4.82541 4.95898 4.99087 5.05657 5.09225 5.11554 5.42985 5.50554 6.20562 6.34040 6.62494 6.87578 7.03765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.066 3.934 4 C -0.104 4.104 5 H 0.098 0.902 6 C -0.122 4.122 7 C 0.112 3.888 8 H 0.088 0.912 9 N -0.697 5.697 10 C 0.560 3.440 11 O -0.558 6.558 12 C -0.182 4.182 13 C 0.160 3.840 14 O -0.493 6.493 15 C -0.135 4.135 16 C -0.040 4.040 17 C -0.090 4.090 18 O -0.565 6.565 19 Si 0.779 3.221 20 C -0.154 4.154 21 C -0.054 4.054 22 C -0.142 4.142 23 H 0.050 0.950 24 H 0.090 0.910 25 H 0.047 0.953 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.111 0.889 29 H 0.089 0.911 30 H 0.412 0.588 31 H 0.410 0.590 32 H 0.147 0.853 33 H 0.101 0.899 34 H 0.406 0.594 35 H -0.279 1.279 36 H -0.292 1.292 37 H 0.137 0.863 38 H 0.163 0.837 39 H 0.059 0.941 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.515 -4.501 -5.173 6.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.011 4.011 4 C -0.122 4.122 5 H 0.116 0.884 6 C -0.160 4.160 7 C 0.007 3.993 8 H 0.106 0.894 9 N -0.350 5.350 10 C 0.348 3.652 11 O -0.437 6.437 12 C -0.186 4.186 13 C 0.114 3.886 14 O -0.307 6.307 15 C -0.153 4.153 16 C -0.040 4.040 17 C -0.199 4.199 18 O -0.375 6.375 19 Si 0.683 3.317 20 C -0.171 4.171 21 C -0.072 4.072 22 C -0.181 4.181 23 H 0.068 0.932 24 H 0.109 0.891 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.108 0.892 30 H 0.250 0.750 31 H 0.270 0.730 32 H 0.165 0.835 33 H 0.119 0.881 34 H 0.258 0.742 35 H -0.206 1.206 36 H -0.220 1.220 37 H 0.154 0.846 38 H 0.181 0.819 39 H 0.078 0.922 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.209 -3.466 -5.009 6.210 hybrid contribution -0.590 -0.054 0.706 0.921 sum -1.798 -3.520 -4.304 5.843 Atomic orbital electron populations 1.22881 0.79872 1.03550 1.00765 1.87847 1.21067 1.29165 1.95592 1.22671 0.92968 0.84333 1.01086 1.22564 0.93150 0.98748 0.97775 0.88378 1.23294 0.95800 0.97057 0.99888 1.21887 0.85243 0.94987 0.97219 0.89404 1.45484 1.10741 1.56028 1.22716 1.18214 0.82797 0.79505 0.84676 1.90803 1.83505 1.47724 1.21703 1.20426 0.94323 1.05495 0.98313 1.18746 0.91173 0.91175 0.87548 1.84717 1.89449 1.42652 1.13841 1.21402 0.99350 0.97962 0.96605 1.19867 0.94588 0.96097 0.93496 1.25023 0.88378 0.95147 1.11369 1.86450 1.25475 1.39133 1.86449 0.94055 0.84296 0.78546 0.74805 1.21032 0.93648 1.02133 1.00326 1.21375 0.99835 0.93377 0.92609 1.23482 0.97079 1.00063 0.97485 0.93152 0.89112 0.93394 0.92425 0.92046 0.87053 0.89204 0.75003 0.73002 0.83546 0.88083 0.74207 1.20597 1.21975 0.84577 0.81949 0.92212 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 11.01 113.37 1.25 1.22 16 2 O -0.42 -1.54 10.70 -148.98 -1.59 -3.14 16 3 C 0.07 -0.08 5.78 71.98 0.42 0.34 16 4 C -0.10 0.22 3.89 -10.26 -0.04 0.18 16 5 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 6 C -0.12 0.51 7.39 31.12 0.23 0.74 16 7 C 0.11 0.15 4.32 45.52 0.20 0.35 16 8 H 0.09 0.50 7.46 -2.39 -0.02 0.48 16 9 N -0.70 -1.24 5.21 -443.22 -2.31 -3.55 16 10 C 0.56 4.90 7.76 86.69 0.67 5.57 16 11 O -0.56 -9.18 14.76 16.91 0.25 -8.93 16 12 C -0.18 -1.18 5.89 -20.01 -0.12 -1.30 16 13 C 0.16 1.31 6.72 22.84 0.15 1.46 16 14 O -0.49 -4.79 11.58 -68.79 -0.80 -5.58 16 15 C -0.13 -0.72 9.53 22.34 0.21 -0.51 16 16 C -0.04 -0.13 5.43 -19.84 -0.11 -0.24 16 17 C -0.09 0.23 2.80 71.23 0.20 0.43 16 18 O -0.56 0.79 12.74 -148.98 -1.90 -1.11 16 19 Si 0.78 -3.85 29.77 68.60 2.04 -1.81 16 20 C -0.15 -0.33 8.64 22.24 0.19 -0.14 16 21 C -0.05 -0.07 9.53 22.52 0.21 0.15 16 22 C -0.14 -0.11 7.43 31.12 0.23 0.13 16 23 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 24 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 25 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 26 H 0.06 -0.14 7.84 -2.38 -0.02 -0.16 16 27 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 28 H 0.11 -0.69 8.10 -2.39 -0.02 -0.71 16 29 H 0.09 -0.54 8.14 -2.39 -0.02 -0.55 16 30 H 0.41 -1.65 6.73 -92.71 -0.62 -2.28 16 31 H 0.41 0.82 9.06 -74.06 -0.67 0.15 16 32 H 0.15 0.53 8.06 -2.91 -0.02 0.50 16 33 H 0.10 -0.69 7.96 -2.39 -0.02 -0.71 16 34 H 0.41 -4.92 8.74 -74.06 -0.65 -5.57 16 35 H -0.28 0.17 7.11 99.48 0.71 0.88 16 36 H -0.29 -0.67 7.11 99.48 0.71 0.03 16 37 H 0.14 -0.04 4.85 -2.91 -0.01 -0.05 16 38 H 0.16 -0.96 6.40 -2.91 -0.02 -0.98 16 39 H 0.06 0.22 8.14 -2.38 -0.02 0.21 16 40 H 0.10 0.00 7.89 -2.39 -0.02 -0.02 16 Total: 0.00 -24.12 335.20 -1.42 -25.54 By element: Atomic # 1 Polarization: -8.98 SS G_CDS: -0.81 Total: -9.80 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 3.70 Total: 8.38 kcal Atomic # 7 Polarization: -1.24 SS G_CDS: -2.31 Total: -3.55 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -4.04 Total: -18.76 kcal Atomic # 14 Polarization: -3.85 SS G_CDS: 2.04 Total: -1.81 kcal Total: -24.12 -1.42 -25.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535612_13422076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.163 kcal (2) G-P(sol) polarization free energy of solvation -24.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds