Wall clock time and date at job start Sun Mar 7 2021 04:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42893 * 114.00151 * 2 1 4 4 C 1.53005 * 109.47461 * 180.02562 * 3 2 1 5 5 H 1.09007 * 112.84850 * 43.79887 * 4 3 2 6 6 C 1.53774 * 113.61688 * 174.99512 * 4 3 2 7 7 C 1.53782 * 87.08050 * 140.06593 * 6 4 3 8 8 H 1.09002 * 113.61539 * 219.93464 * 7 6 4 9 9 N 1.46504 * 113.61480 * 89.12053 * 7 6 4 10 10 C 1.34767 * 120.00038 * 155.00323 * 9 7 6 11 11 O 1.21689 * 120.00336 * 359.97438 * 10 9 7 12 12 C 1.46684 * 120.00109 * 179.97438 * 10 9 7 13 13 C 1.37870 * 126.23813 * 180.20001 * 12 10 9 14 14 C 1.50701 * 126.45468 * 0.02562 * 13 12 10 15 15 C 1.39828 * 107.08722 * 180.23386 * 13 12 10 16 16 C 1.35453 * 107.86576 * 359.75451 * 15 13 12 17 17 C 1.50696 * 125.56437 * 180.02562 * 16 15 13 18 18 O 1.42908 * 109.46996 * 244.99976 * 17 16 15 19 19 Si 1.86294 * 109.47352 * 4.99930 * 17 16 15 20 20 N 1.35537 * 108.87115 * 0.02562 * 16 15 13 21 21 C 1.53777 * 87.08198 * 334.56784 * 7 6 4 22 22 H 1.09009 * 109.46812 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47007 * 299.99807 * 1 2 3 24 24 H 1.08991 * 109.47102 * 60.00420 * 1 2 3 25 25 H 1.08999 * 109.47782 * 59.99877 * 3 2 1 26 26 H 1.09009 * 109.46964 * 299.99545 * 3 2 1 27 27 H 1.08996 * 113.61547 * 25.51987 * 6 4 3 28 28 H 1.09003 * 113.61751 * 254.61561 * 6 4 3 29 29 H 0.97004 * 119.99755 * 334.99690 * 9 7 6 30 30 H 1.09005 * 109.46854 * 270.27263 * 14 13 12 31 31 H 1.09000 * 109.47637 * 30.26805 * 14 13 12 32 32 H 1.09002 * 109.47267 * 150.27557 * 14 13 12 33 33 H 1.08003 * 126.06721 * 179.76229 * 15 13 12 34 34 H 1.09000 * 109.47355 * 125.00493 * 17 16 15 35 35 H 0.96703 * 113.99602 * 60.00478 * 18 17 16 36 36 H 1.48501 * 110.00356 * 179.97438 * 19 17 16 37 37 H 1.48498 * 110.00338 * 301.32206 * 19 17 16 38 38 H 0.97001 * 125.67560 * 179.97438 * 20 16 15 39 39 H 1.08997 * 113.61460 * 139.97889 * 21 7 6 40 40 H 1.08999 * 113.62036 * 270.88620 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8999 0.4285 -0.6962 6 6 4.2604 2.5352 -0.1236 7 6 5.2692 1.9983 0.9054 8 1 5.5834 2.7418 1.6379 9 7 6.3961 1.2812 0.3035 10 6 7.5695 1.1968 0.9609 11 8 7.6933 1.7165 2.0542 12 6 8.6976 0.4784 0.3585 13 6 9.9475 0.3099 0.9155 14 6 10.4087 0.8276 2.2536 15 6 10.7080 -0.4276 0.0029 16 6 9.9252 -0.6957 -1.0695 17 6 10.3474 -1.4707 -2.2910 18 8 10.3326 -0.6087 -3.4307 19 14 12.0685 -2.1377 -2.0391 20 7 8.7002 -0.1530 -0.8646 21 6 4.1471 1.0735 1.4059 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8899 25 1 1.6887 1.8464 0.8899 26 1 1.6886 1.8463 -0.8901 27 1 3.6745 3.3798 0.2390 28 1 4.6929 2.7106 -1.1087 29 1 6.2975 0.8671 -0.5682 30 1 10.8314 1.8249 2.1313 31 1 9.5610 0.8737 2.9372 32 1 11.1674 0.1588 2.6601 33 1 11.7370 -0.7299 0.1305 34 1 9.6569 -2.2985 -2.4527 35 1 10.9254 0.1518 -3.3563 36 1 12.4964 -2.9046 -3.2366 37 1 13.0140 -1.0209 -1.7861 38 1 7.9512 -0.1989 -1.4793 39 1 4.4882 0.0688 1.6556 40 1 3.5302 1.5184 2.1866 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535612_13940406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:32:29 Heat of formation + Delta-G solvation = -46.506728 kcal Electronic energy + Delta-G solvation = -22009.956767 eV Core-core repulsion = 18599.865691 eV Total energy + Delta-G solvation = -3410.091076 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.64162 -41.14137 -39.55465 -38.25082 -37.83212 -34.79965 -33.44265 -31.68616 -29.74000 -28.21726 -27.26418 -26.81500 -26.46634 -23.82827 -22.76889 -21.61325 -20.63706 -20.22275 -19.58580 -18.20447 -17.45228 -17.18092 -16.83800 -16.75852 -16.44564 -16.27774 -16.01665 -15.48525 -15.33128 -14.90154 -14.75989 -14.40301 -14.20257 -13.87797 -13.72802 -13.61170 -13.56523 -13.48809 -13.01039 -12.86484 -12.41562 -12.27064 -11.87118 -11.85118 -11.63279 -11.33728 -11.19728 -10.82596 -10.62326 -10.25180 -9.84588 -9.22844 -4.83163 0.27238 1.22092 1.51331 1.69495 1.87559 1.96628 2.20257 2.21513 2.76239 3.34559 3.40807 3.55759 3.56315 3.72766 3.81431 3.91737 4.12242 4.20730 4.30401 4.36715 4.44572 4.48410 4.56531 4.58770 4.66143 4.70430 4.71682 4.76707 4.80526 4.82774 4.89347 4.96924 5.03715 5.08990 5.16075 5.33537 5.48941 5.61975 5.83618 6.20580 6.27448 6.39532 6.44086 7.02934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.065 3.935 4 C -0.105 4.105 5 H 0.096 0.904 6 C -0.122 4.122 7 C 0.114 3.886 8 H 0.092 0.908 9 N -0.702 5.702 10 C 0.589 3.411 11 O -0.560 6.560 12 C -0.071 4.071 13 C -0.084 4.084 14 C -0.090 4.090 15 C -0.208 4.208 16 C 0.038 3.962 17 C -0.064 4.064 18 O -0.548 6.548 19 Si 0.794 3.206 20 N -0.514 5.514 21 C -0.143 4.143 22 H 0.090 0.910 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.112 0.888 28 H 0.088 0.912 29 H 0.407 0.593 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.166 0.834 34 H 0.134 0.866 35 H 0.390 0.610 36 H -0.298 1.298 37 H -0.281 1.281 38 H 0.427 0.573 39 H 0.058 0.942 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.948 -1.068 -2.579 3.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.011 4.011 4 C -0.123 4.123 5 H 0.114 0.886 6 C -0.160 4.160 7 C 0.009 3.991 8 H 0.110 0.890 9 N -0.353 5.353 10 C 0.379 3.621 11 O -0.439 6.439 12 C -0.184 4.184 13 C -0.093 4.093 14 C -0.148 4.148 15 C -0.232 4.232 16 C -0.081 4.081 17 C -0.172 4.172 18 O -0.356 6.356 19 Si 0.697 3.303 20 N -0.111 5.111 21 C -0.182 4.182 22 H 0.109 0.891 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.130 0.870 28 H 0.106 0.894 29 H 0.243 0.757 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.183 0.817 34 H 0.152 0.848 35 H 0.239 0.761 36 H -0.225 1.225 37 H -0.207 1.207 38 H 0.267 0.733 39 H 0.077 0.923 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.568 -1.262 -2.376 3.114 hybrid contribution -0.861 1.101 -1.119 1.791 sum -2.429 -0.161 -3.495 4.260 Atomic orbital electron populations 1.22881 0.79861 1.03553 1.00769 1.87848 1.21077 1.29180 1.95593 1.22674 0.92998 0.84337 1.01081 1.22561 0.93147 0.98760 0.97825 0.88619 1.23290 0.95826 0.97012 0.99857 1.21879 0.85174 0.94926 0.97116 0.88987 1.45447 1.11028 1.56403 1.22420 1.17208 0.81667 0.78917 0.84349 1.90815 1.83289 1.48439 1.21343 1.20121 0.97214 1.10657 0.90381 1.20173 0.91761 0.99733 0.97641 1.20343 1.01591 1.00740 0.92083 1.20839 1.01264 1.06644 0.94417 1.21226 0.85682 1.02352 0.98845 1.25082 1.15265 0.94847 0.82030 1.86582 1.68070 1.41197 1.39769 0.93258 0.70518 0.82250 0.84282 1.41832 1.12722 1.41297 1.15262 1.23483 0.97174 1.00093 0.97437 0.89122 0.93364 0.93167 0.92359 0.92119 0.86984 0.89357 0.75701 0.91619 0.92038 0.89911 0.81679 0.84806 0.76067 1.22530 1.20684 0.73347 0.92325 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 11.01 113.37 1.25 1.21 16 2 O -0.42 -1.42 10.70 -148.98 -1.59 -3.01 16 3 C 0.07 -0.10 5.78 71.98 0.42 0.31 16 4 C -0.10 0.29 3.88 -10.27 -0.04 0.25 16 5 H 0.10 -0.24 8.14 -2.38 -0.02 -0.26 16 6 C -0.12 0.64 7.39 31.12 0.23 0.87 16 7 C 0.11 0.00 4.32 45.52 0.20 0.19 16 8 H 0.09 0.35 7.46 -2.39 -0.02 0.33 16 9 N -0.70 -0.10 5.26 -444.00 -2.33 -2.43 16 10 C 0.59 4.01 7.79 86.45 0.67 4.68 16 11 O -0.56 -7.95 14.41 -4.31 -0.06 -8.01 16 12 C -0.07 -0.31 7.06 40.35 0.28 -0.02 16 13 C -0.08 -0.43 6.21 -19.57 -0.12 -0.56 16 14 C -0.09 -0.46 9.82 71.24 0.70 0.24 16 15 C -0.21 -0.12 9.27 22.01 0.20 0.08 16 16 C 0.04 -0.06 6.46 41.34 0.27 0.21 16 17 C -0.06 0.27 3.08 71.23 0.22 0.49 16 18 O -0.55 0.84 12.88 -148.98 -1.92 -1.07 16 19 Si 0.79 -3.67 30.56 68.60 2.10 -1.57 16 20 N -0.51 0.74 5.99 -171.93 -1.03 -0.29 16 21 C -0.14 0.00 7.43 31.12 0.23 0.23 16 22 H 0.09 -0.24 8.14 -2.38 -0.02 -0.26 16 23 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 24 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 25 H 0.06 -0.17 7.85 -2.39 -0.02 -0.19 16 26 H 0.06 -0.22 8.14 -2.38 -0.02 -0.24 16 27 H 0.11 -0.81 8.10 -2.39 -0.02 -0.83 16 28 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 29 H 0.41 -2.17 7.83 -92.70 -0.73 -2.89 16 30 H 0.07 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.06 0.58 6.50 -2.39 -0.02 0.56 16 32 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.17 -0.56 6.19 -2.91 -0.02 -0.57 16 34 H 0.13 -0.92 7.96 -2.39 -0.02 -0.94 16 35 H 0.39 -2.39 8.70 -74.06 -0.64 -3.03 16 36 H -0.30 -0.78 7.11 99.48 0.71 -0.07 16 37 H -0.28 0.05 7.11 99.48 0.71 0.76 16 38 H 0.43 -2.75 8.19 -92.71 -0.76 -3.51 16 39 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.10 -0.07 7.90 -2.39 -0.02 -0.09 16 Total: 0.00 -18.52 333.48 -1.35 -19.87 By element: Atomic # 1 Polarization: -10.64 SS G_CDS: -1.02 Total: -11.66 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 4.51 Total: 8.18 kcal Atomic # 7 Polarization: 0.65 SS G_CDS: -3.37 Total: -2.72 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -3.58 Total: -12.10 kcal Atomic # 14 Polarization: -3.67 SS G_CDS: 2.10 Total: -1.57 kcal Total: -18.52 -1.35 -19.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535612_13940406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.636 kcal (2) G-P(sol) polarization free energy of solvation -18.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds