Wall clock time and date at job start Sun Mar 7 2021 04:32:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42891 * 1
3 3 C 1.42898 * 114.00196 * 2 1
4 4 C 1.53000 * 109.47217 * 179.97438 * 3 2 1
5 5 H 1.09002 * 112.85137 * 43.80661 * 4 3 2
6 6 C 1.53781 * 113.61194 * 174.99979 * 4 3 2
7 7 C 1.53781 * 87.08331 * 140.06551 * 6 4 3
8 8 H 1.08996 * 113.61406 * 219.93395 * 7 6 4
9 9 N 1.46499 * 113.61572 * 89.11122 * 7 6 4
10 10 C 1.34770 * 120.00191 * 156.52798 * 9 7 6
11 11 O 1.21282 * 119.99943 * 0.02562 * 10 9 7
12 12 C 1.50699 * 120.00519 * 179.97438 * 10 9 7
13 13 O 1.42897 * 109.47708 * 180.02562 * 12 10 9
14 14 C 1.35895 * 117.00208 * 180.02562 * 13 12 10
15 15 C 1.38735 * 120.05238 * 180.02562 * 14 13 12
16 16 C 1.38147 * 119.94145 * 180.02562 * 15 14 13
17 17 C 1.38267 * 120.05771 * 0.02731 * 16 15 14
18 18 C 1.50699 * 119.94534 * 179.97438 * 17 16 15
19 19 O 1.42895 * 109.47158 * 299.99634 * 18 17 16
20 20 Si 1.86300 * 109.46944 * 180.02562 * 18 17 16
21 21 C 1.38271 * 120.10847 * 0.24836 * 17 16 15
22 22 C 1.38146 * 120.05540 * 359.45178 * 21 17 16
23 23 C 1.53785 * 87.16897 * 334.52644 * 7 6 4
24 24 H 1.09007 * 109.47339 * 180.02562 * 1 2 3
25 25 H 1.08994 * 109.47557 * 300.00006 * 1 2 3
26 26 H 1.08995 * 109.47253 * 60.00417 * 1 2 3
27 27 H 1.09005 * 109.47088 * 59.99574 * 3 2 1
28 28 H 1.08999 * 109.46816 * 300.00080 * 3 2 1
29 29 H 1.08998 * 113.61740 * 25.51436 * 6 4 3
30 30 H 1.09007 * 113.68728 * 254.62528 * 6 4 3
31 31 H 0.97004 * 119.99918 * 336.53727 * 9 7 6
32 32 H 1.09001 * 109.46586 * 60.00433 * 12 10 9
33 33 H 1.08995 * 109.47495 * 300.00807 * 12 10 9
34 34 H 1.07994 * 120.03351 * 0.04968 * 15 14 13
35 35 H 1.07997 * 119.97419 * 179.97438 * 16 15 14
36 36 H 1.09000 * 109.47247 * 60.00087 * 18 17 16
37 37 H 0.96698 * 114.00355 * 300.00487 * 19 18 17
38 38 H 1.48506 * 110.00048 * 180.02562 * 20 18 17
39 39 H 1.48502 * 109.99996 * 301.31619 * 20 18 17
40 40 H 1.08003 * 119.96765 * 179.70258 * 21 17 16
41 41 H 1.08003 * 120.02761 * 180.25084 * 22 21 17
42 42 H 1.09002 * 113.61271 * 140.02574 * 23 7 6
43 43 H 1.09001 * 113.61030 * 270.92694 * 23 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5354 1.1846 0.0006
5 1 3.9004 0.4284 -0.6944
6 6 4.2603 2.5352 -0.1221
7 6 5.2684 1.9987 0.9079
8 1 5.5819 2.7425 1.6403
9 7 6.3957 1.2814 0.3072
10 6 7.5589 1.1708 0.9787
11 8 7.6723 1.6648 2.0805
12 6 8.7184 0.4324 0.3611
13 8 9.8290 0.4520 1.2600
14 6 10.9640 -0.1742 0.8522
15 6 12.0805 -0.1944 1.6755
16 6 13.2333 -0.8312 1.2584
17 6 13.2752 -1.4476 0.0214
18 6 14.5342 -2.1411 -0.4313
19 8 15.6068 -1.1981 -0.4783
20 14 14.2692 -2.8642 -2.1277
21 6 12.1655 -1.4240 -0.8033
22 6 11.0084 -0.7939 -0.3882
23 6 4.1471 1.0738 1.4101
24 1 -0.3634 -1.0277 0.0005
25 1 -0.3634 0.5138 0.8899
26 1 -0.3633 0.5137 -0.8900
27 1 1.6885 1.8464 0.8900
28 1 1.6885 1.8463 -0.8900
29 1 3.6741 3.3799 0.2397
30 1 4.6940 2.7116 -1.1065
31 1 6.3049 0.8861 -0.5740
32 1 8.9995 0.9154 -0.5748
33 1 8.4286 -0.5998 0.1645
34 1 12.0484 0.2869 2.6417
35 1 14.1029 -0.8469 1.8986
36 1 14.7819 -2.9385 0.2694
37 1 15.4547 -0.4592 -1.0833
38 1 15.5036 -3.5515 -2.5853
39 1 13.1354 -3.8229 -2.0997
40 1 12.2023 -1.9021 -1.7710
41 1 10.1406 -0.7791 -1.0311
42 1 4.4890 0.0699 1.6617
43 1 3.5299 1.5198 2.1901
There are 57 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 57
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_22_16535612_2989410.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 04:32:45
Heat of formation + Delta-G solvation = -89.379543 kcal
Electronic energy + Delta-G solvation = -24298.161543 eV
Core-core repulsion = 20504.728941 eV
Total energy + Delta-G solvation = -3793.432603 eV
No. of doubly occupied orbitals = 57
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 308.150 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.68869 -41.10003 -39.83150 -38.91368 -38.19131 -37.10783 -34.57526 -32.41681
-31.75191 -30.37662 -29.10455 -27.05387 -26.73256 -26.20988 -24.24015 -23.54532
-22.49188 -21.85958 -20.42095 -19.52712 -18.46949 -18.16599 -17.52705 -17.47059
-17.17245 -16.91595 -16.78467 -16.38577 -16.35210 -15.97707 -15.59768 -15.53439
-15.27759 -14.78185 -14.67073 -14.35967 -14.25168 -13.92120 -13.74993 -13.60226
-13.54484 -13.44181 -12.93616 -12.47875 -12.22753 -12.12743 -12.05676 -11.95858
-11.73831 -11.69242 -11.39848 -10.94101 -10.66161 -10.42671 -10.19147 -10.05562
-9.22065 -5.06448 0.28110 0.29117 1.28996 1.38214 1.43764 1.60387
1.95932 2.49946 2.65511 2.67646 3.30867 3.41018 3.46487 3.47694
3.65595 3.69685 3.72039 3.83761 3.85856 3.86804 3.88298 4.21190
4.25576 4.26801 4.33755 4.43280 4.46066 4.48410 4.50312 4.56202
4.61162 4.63139 4.69185 4.72728 4.94166 4.94391 4.95764 5.03849
5.14093 5.23995 5.44499 5.49739 5.67346 6.13647 6.20010 6.34279
6.58383 7.05267
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.391 6.391
3 C 0.069 3.931
4 C -0.110 4.110
5 H 0.099 0.901
6 C -0.136 4.136
7 C 0.121 3.879
8 H 0.107 0.893
9 N -0.710 5.710
10 C 0.519 3.481
11 O -0.510 6.510
12 C 0.040 3.960
13 O -0.288 6.288
14 C 0.134 3.866
15 C -0.145 4.145
16 C -0.051 4.051
17 C -0.157 4.157
18 C -0.063 4.063
19 O -0.541 6.541
20 Si 0.687 3.313
21 C -0.076 4.076
22 C -0.206 4.206
23 C -0.143 4.143
24 H 0.087 0.913
25 H 0.042 0.958
26 H 0.041 0.959
27 H 0.052 0.948
28 H 0.051 0.949
29 H 0.100 0.900
30 H 0.079 0.921
31 H 0.403 0.597
32 H 0.096 0.904
33 H 0.095 0.905
34 H 0.136 0.864
35 H 0.135 0.865
36 H 0.113 0.887
37 H 0.379 0.621
38 H -0.255 1.255
39 H -0.259 1.259
40 H 0.129 0.871
41 H 0.132 0.868
42 H 0.075 0.925
43 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.021 1.590 -6.014 7.407
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.310 6.310
3 C -0.008 4.008
4 C -0.128 4.128
5 H 0.117 0.883
6 C -0.175 4.175
7 C 0.016 3.984
8 H 0.125 0.875
9 N -0.364 5.364
10 C 0.303 3.697
11 O -0.383 6.383
12 C -0.038 4.038
13 O -0.200 6.200
14 C 0.088 3.912
15 C -0.164 4.164
16 C -0.069 4.069
17 C -0.158 4.158
18 C -0.174 4.174
19 O -0.346 6.346
20 Si 0.589 3.411
21 C -0.094 4.094
22 C -0.225 4.225
23 C -0.182 4.182
24 H 0.105 0.895
25 H 0.060 0.940
26 H 0.060 0.940
27 H 0.070 0.930
28 H 0.069 0.931
29 H 0.118 0.882
30 H 0.098 0.902
31 H 0.238 0.762
32 H 0.114 0.886
33 H 0.113 0.887
34 H 0.154 0.846
35 H 0.153 0.847
36 H 0.130 0.870
37 H 0.226 0.774
38 H -0.180 1.180
39 H -0.184 1.184
40 H 0.147 0.853
41 H 0.150 0.850
42 H 0.093 0.907
43 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -3.609 0.750 -5.062 6.262
hybrid contribution -0.570 -0.179 -0.068 0.602
sum -4.179 0.571 -5.130 6.641
Atomic orbital electron populations
1.22762 0.80768 1.03012 1.00066 1.87885 1.19881 1.27854 1.95420
1.22559 0.92947 0.84928 1.00338 1.22664 0.93261 0.98237 0.98684
0.88311 1.23330 0.96887 0.97239 0.99998 1.21837 0.85033 0.95044
0.96510 0.87510 1.45470 1.11855 1.57620 1.21449 1.20030 0.83180
0.80497 0.85964 1.90791 1.82271 1.45949 1.19297 1.22461 0.85941
1.01902 0.93542 1.86171 1.19218 1.71638 1.43001 1.19075 0.86318
0.92644 0.93119 1.20540 0.91160 1.03810 1.00862 1.20857 0.96873
0.94135 0.95036 1.20257 0.96214 1.03188 0.96133 1.24978 0.86279
0.95290 1.10898 1.86500 1.40812 1.38666 1.68663 0.94822 0.80254
0.85263 0.80738 1.20787 0.92335 0.97609 0.98622 1.21172 1.00148
1.04473 0.96700 1.23538 0.96995 1.01063 0.96602 0.89475 0.93973
0.93994 0.92963 0.93079 0.88203 0.90231 0.76219 0.88571 0.88672
0.84626 0.84741 0.86967 0.77385 1.18009 1.18389 0.85319 0.85046
0.90658 0.88838
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 -0.03 11.01 101.05 1.11 1.08 16
2 O -0.39 -0.53 10.70 -35.23 -0.38 -0.91 16
3 C 0.07 -0.07 5.78 37.16 0.21 0.14 16
4 C -0.11 0.22 3.90 -89.67 -0.35 -0.13 16
5 H 0.10 -0.20 8.14 -51.93 -0.42 -0.62 16
6 C -0.14 0.43 7.38 -25.92 -0.19 0.24 16
7 C 0.12 -0.14 4.30 -67.12 -0.29 -0.43 16
8 H 0.11 0.07 7.50 -51.93 -0.39 -0.32 16
9 N -0.71 1.29 5.26 -53.02 -0.28 1.02 16
10 C 0.52 0.63 7.91 -10.99 -0.09 0.54 16
11 O -0.51 -3.21 16.12 -14.35 -0.23 -3.44 16
12 C 0.04 -0.05 5.22 36.01 0.19 0.14 16
13 O -0.29 -0.78 9.67 -39.32 -0.38 -1.16 16
14 C 0.13 0.22 6.69 -39.22 -0.26 -0.04 16
15 C -0.15 -0.25 9.99 -39.43 -0.39 -0.65 16
16 C -0.05 -0.05 9.60 -39.60 -0.38 -0.43 16
17 C -0.16 -0.04 5.39 -104.60 -0.56 -0.60 16
18 C -0.06 0.01 2.82 36.01 0.10 0.11 16
19 O -0.54 -0.16 12.76 -35.23 -0.45 -0.61 16
20 Si 0.69 -0.82 29.78 -169.99 -5.06 -5.88 16
21 C -0.08 0.05 8.66 -39.60 -0.34 -0.29 16
22 C -0.21 0.10 9.04 -39.43 -0.36 -0.26 16
23 C -0.14 0.13 7.45 -25.78 -0.19 -0.06 16
24 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16
25 H 0.04 -0.07 8.14 -51.93 -0.42 -0.49 16
26 H 0.04 -0.07 8.14 -51.93 -0.42 -0.50 16
27 H 0.05 -0.08 7.85 -51.93 -0.41 -0.49 16
28 H 0.05 -0.09 8.14 -51.93 -0.42 -0.52 16
29 H 0.10 -0.37 8.10 -51.93 -0.42 -0.79 16
30 H 0.08 -0.31 8.14 -51.93 -0.42 -0.74 16
31 H 0.40 -1.97 8.70 -40.82 -0.36 -2.33 16
32 H 0.10 -0.38 7.66 -51.93 -0.40 -0.78 16
33 H 0.10 -0.34 7.67 -51.93 -0.40 -0.73 16
34 H 0.14 0.18 8.06 -52.49 -0.42 -0.24 16
35 H 0.13 0.03 8.06 -52.49 -0.42 -0.39 16
36 H 0.11 0.03 7.96 -51.93 -0.41 -0.38 16
37 H 0.38 -1.34 8.70 45.56 0.40 -0.95 16
38 H -0.26 -0.56 7.11 56.52 0.40 -0.16 16
39 H -0.26 -0.26 7.11 56.52 0.40 0.14 16
40 H 0.13 -0.34 4.87 -52.48 -0.26 -0.60 16
41 H 0.13 -0.43 6.30 -52.48 -0.33 -0.76 16
42 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16
43 H 0.09 -0.10 7.91 -51.93 -0.41 -0.51 16
LS Contribution 359.98 15.07 5.42 5.42
Total: 0.00 -9.78 359.98 -9.53 -19.32
By element:
Atomic # 1 Polarization: -6.73 SS G_CDS: -6.39 Total: -13.12 kcal
Atomic # 6 Polarization: 1.15 SS G_CDS: -1.79 Total: -0.64 kcal
Atomic # 7 Polarization: 1.29 SS G_CDS: -0.28 Total: 1.02 kcal
Atomic # 8 Polarization: -4.68 SS G_CDS: -1.44 Total: -6.12 kcal
Atomic # 14 Polarization: -0.82 SS G_CDS: -5.06 Total: -5.88 kcal
Total LS contribution 5.42 Total: 5.42 kcal
Total: -9.78 -9.53 -19.32 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16535612_2989410.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -70.064 kcal
(2) G-P(sol) polarization free energy of solvation -9.784 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.848 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.315 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.380 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds