Wall clock time and date at job start Sun Mar 7 2021 04:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99965 * 2 1 4 4 C 1.52994 * 109.47208 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.84929 * 316.20232 * 4 3 2 6 6 C 1.53962 * 113.66220 * 87.44357 * 4 3 2 7 7 C 1.53786 * 87.01719 * 139.93548 * 6 4 3 8 8 H 1.09002 * 113.61357 * 220.04719 * 7 6 4 9 9 N 1.46497 * 113.61643 * 89.22773 * 7 6 4 10 10 C 1.34780 * 119.99653 * 105.85894 * 9 7 6 11 11 O 1.21270 * 120.00163 * 0.02562 * 10 9 7 12 12 C 1.50711 * 119.99583 * 179.97438 * 10 9 7 13 13 C 1.53002 * 109.46742 * 180.02562 * 12 10 9 14 14 O 1.42896 * 109.46788 * 180.02562 * 13 12 10 15 15 C 1.35907 * 116.99689 * 179.97438 * 14 13 12 16 16 C 1.38715 * 120.05398 * 179.97438 * 15 14 13 17 17 C 1.38162 * 119.94214 * 180.02562 * 16 15 14 18 18 C 1.50703 * 119.96920 * 179.97438 * 17 16 15 19 19 O 1.42905 * 109.46958 * 299.99513 * 18 17 16 20 20 Si 1.86297 * 109.46953 * 180.02562 * 18 17 16 21 21 C 1.38239 * 120.05659 * 359.97438 * 17 16 15 22 22 C 1.38286 * 120.11327 * 359.97438 * 21 17 16 23 23 C 1.38127 * 120.05334 * 359.76607 * 22 21 17 24 24 C 1.53781 * 87.17350 * 334.63802 * 7 6 4 25 25 H 1.09002 * 109.47261 * 300.00139 * 1 2 3 26 26 H 1.09000 * 109.47034 * 59.99664 * 1 2 3 27 27 H 1.09002 * 109.47089 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46617 * 60.00415 * 3 2 1 29 29 H 1.08998 * 109.47293 * 300.00342 * 3 2 1 30 30 H 1.08993 * 113.61598 * 25.41530 * 6 4 3 31 31 H 1.09000 * 113.66569 * 254.45886 * 6 4 3 32 32 H 0.96995 * 120.00146 * 285.86755 * 9 7 6 33 33 H 1.08992 * 109.47059 * 300.00404 * 12 10 9 34 34 H 1.08997 * 109.46986 * 60.00582 * 12 10 9 35 35 H 1.09004 * 109.46931 * 299.99929 * 13 12 10 36 36 H 1.08997 * 109.47279 * 60.00303 * 13 12 10 37 37 H 1.08008 * 120.02405 * 0.02582 * 16 15 14 38 38 H 1.09000 * 109.47591 * 59.99762 * 18 17 16 39 39 H 0.96703 * 113.99962 * 180.02562 * 19 18 17 40 40 H 1.48500 * 110.00467 * 59.99633 * 20 18 17 41 41 H 1.48501 * 109.99858 * 181.31875 * 20 18 17 42 42 H 1.08002 * 119.94263 * 180.02562 * 21 17 16 43 43 H 1.07998 * 119.97177 * 180.02562 * 22 21 17 44 44 H 1.07995 * 120.02529 * 180.27869 * 23 22 21 45 45 H 1.09001 * 113.61695 * 139.93969 * 24 7 6 46 46 H 1.08997 * 113.61223 * 270.84552 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8998 0.4287 0.6962 6 6 4.1470 1.0730 -1.4079 7 6 5.2678 1.9993 -0.9072 8 1 5.5798 2.7430 -1.6405 9 7 6.3965 1.2836 -0.3072 10 6 7.5592 1.1739 -0.9800 11 8 7.6711 1.6679 -2.0819 12 6 8.7205 0.4381 -0.3625 13 6 9.9088 0.4606 -1.3260 14 8 11.0098 -0.2376 -0.7408 15 6 12.1527 -0.3114 -1.4725 16 6 13.2608 -0.9738 -0.9651 17 6 14.4217 -1.0470 -1.7107 18 6 15.6261 -1.7660 -1.1598 19 8 16.0368 -1.1426 0.0587 20 14 17.0167 -1.6858 -2.3970 21 6 14.4792 -0.4614 -2.9616 22 6 13.3755 0.1986 -3.4701 23 6 12.2109 0.2700 -2.7309 24 6 4.2603 2.5354 0.1235 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8463 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 3.5295 1.5172 -2.1885 31 1 4.4895 0.0688 -1.6577 32 1 6.3071 0.8887 0.5742 33 1 9.0019 0.9227 0.5723 34 1 8.4325 -0.5943 -0.1643 35 1 9.6276 -0.0238 -2.2611 36 1 10.1967 1.4931 -1.5239 37 1 13.2161 -1.4319 0.0120 38 1 15.3706 -2.8079 -0.9668 39 1 16.8092 -1.5541 0.4701 40 1 17.3744 -0.2703 -2.6681 41 1 18.2001 -2.4185 -1.8791 42 1 15.3875 -0.5201 -3.5430 43 1 13.4229 0.6550 -4.4478 44 1 11.3478 0.7817 -3.1303 45 1 4.6941 2.7101 1.1081 46 1 3.6738 3.3801 -0.2377 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535612_4549614.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:32:50 Heat of formation + Delta-G solvation = -98.063577 kcal Electronic energy + Delta-G solvation = -25873.558909 eV Core-core repulsion = 21924.212120 eV Total energy + Delta-G solvation = -3949.346790 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.54947 -41.16186 -39.84364 -39.04417 -38.22821 -37.45199 -34.56273 -33.20921 -32.60710 -30.89335 -29.64047 -27.17058 -26.92957 -26.63639 -25.46580 -23.67142 -23.43923 -22.14014 -21.48304 -20.28859 -19.21908 -18.57256 -18.04219 -17.50939 -17.40242 -17.30108 -17.12173 -16.95818 -16.73848 -16.35180 -15.99162 -15.83244 -15.68251 -15.24542 -14.68747 -14.56747 -14.51112 -14.30072 -14.04545 -13.95679 -13.68726 -13.47442 -13.43454 -12.97900 -12.93560 -12.80509 -12.39845 -12.35481 -12.02613 -11.83486 -11.82231 -11.69334 -11.59357 -11.29550 -11.10372 -10.60324 -10.57342 -10.12787 -9.90672 -9.28313 -4.91070 0.18634 0.38167 1.28404 1.47095 1.61075 1.67728 1.95859 2.45076 2.61922 2.78841 3.35885 3.45538 3.53388 3.60452 3.73663 3.79822 3.83781 3.88917 3.95370 3.97806 4.09835 4.22710 4.25162 4.33206 4.34780 4.38879 4.46668 4.47865 4.58975 4.61130 4.61753 4.65774 4.71219 4.74964 4.75420 4.83247 4.84771 4.96913 5.00734 5.08730 5.17829 5.23927 5.36720 5.44334 5.56104 5.68255 6.22508 6.31236 6.42783 6.58117 7.12019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.065 3.935 4 C -0.105 4.105 5 H 0.099 0.901 6 C -0.145 4.145 7 C 0.113 3.887 8 H 0.087 0.913 9 N -0.699 5.699 10 C 0.523 3.477 11 O -0.582 6.582 12 C -0.133 4.133 13 C 0.074 3.926 14 O -0.324 6.324 15 C 0.116 3.884 16 C -0.142 4.142 17 C -0.048 4.048 18 C -0.090 4.090 19 O -0.559 6.559 20 Si 0.772 3.228 21 C -0.159 4.159 22 C -0.075 4.075 23 C -0.212 4.212 24 C -0.122 4.122 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.418 0.582 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.128 0.872 38 H 0.097 0.903 39 H 0.396 0.604 40 H -0.299 1.299 41 H -0.283 1.283 42 H 0.147 0.853 43 H 0.155 0.845 44 H 0.139 0.861 45 H 0.092 0.908 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.111 -1.356 1.437 3.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.012 4.012 4 C -0.124 4.124 5 H 0.117 0.883 6 C -0.184 4.184 7 C 0.007 3.993 8 H 0.105 0.895 9 N -0.351 5.351 10 C 0.310 3.690 11 O -0.462 6.462 12 C -0.172 4.172 13 C -0.002 4.002 14 O -0.238 6.238 15 C 0.071 3.929 16 C -0.161 4.161 17 C -0.048 4.048 18 C -0.198 4.198 19 O -0.369 6.369 20 Si 0.676 3.324 21 C -0.177 4.177 22 C -0.093 4.093 23 C -0.230 4.230 24 C -0.160 4.160 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.256 0.744 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.146 0.854 38 H 0.115 0.885 39 H 0.246 0.754 40 H -0.226 1.226 41 H -0.210 1.210 42 H 0.164 0.836 43 H 0.173 0.827 44 H 0.156 0.844 45 H 0.110 0.890 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.685 -0.617 0.580 2.816 hybrid contribution -0.127 0.201 1.399 1.419 sum -2.812 -0.416 1.979 3.464 Atomic orbital electron populations 1.22882 0.79890 1.03552 1.00748 1.87850 1.21063 1.29245 1.95588 1.22685 0.93215 0.84277 1.00975 1.22612 0.92952 0.98957 0.97844 0.88264 1.23513 0.97358 1.00158 0.97359 1.21847 0.85490 0.94882 0.97048 0.89466 1.45548 1.11361 1.56426 1.21743 1.20623 0.84207 0.79192 0.84943 1.90731 1.83771 1.49688 1.21968 1.21434 0.90899 1.04287 1.00581 1.22443 0.84476 0.96665 0.96579 1.85947 1.20274 1.72789 1.44775 1.19126 0.86446 0.96277 0.91036 1.20319 0.91151 1.03258 1.01322 1.19309 0.93506 0.97694 0.94299 1.25117 1.02339 0.98564 0.93783 1.86551 1.52246 1.60343 1.37742 0.93998 0.74683 0.79334 0.84344 1.21129 1.00067 1.00532 0.95929 1.21237 0.91309 0.96353 1.00357 1.21553 1.01090 1.05420 0.94975 1.23268 0.95846 0.96816 1.00028 0.93147 0.93425 0.89112 0.92123 0.92562 0.88947 0.92197 0.74445 0.85529 0.85548 0.91491 0.91739 0.85362 0.88508 0.75373 1.22639 1.21048 0.83615 0.82713 0.84364 0.88977 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 11.01 113.37 1.25 1.21 16 2 O -0.42 -1.39 10.70 -148.98 -1.59 -2.98 16 3 C 0.06 -0.12 5.78 71.98 0.42 0.30 16 4 C -0.11 0.36 3.90 -10.21 -0.04 0.32 16 5 H 0.10 -0.34 8.14 -2.39 -0.02 -0.35 16 6 C -0.15 0.11 7.45 31.18 0.23 0.34 16 7 C 0.11 -0.17 4.29 45.52 0.20 0.03 16 8 H 0.09 0.23 7.50 -2.39 -0.02 0.21 16 9 N -0.70 2.06 5.27 -440.03 -2.32 -0.26 16 10 C 0.52 1.00 7.83 87.66 0.69 1.69 16 11 O -0.58 -6.32 15.60 -3.00 -0.05 -6.37 16 12 C -0.13 0.35 6.07 29.85 0.18 0.53 16 13 C 0.07 0.21 4.03 71.98 0.29 0.50 16 14 O -0.32 -2.03 10.14 -92.50 -0.94 -2.96 16 15 C 0.12 0.88 6.69 22.51 0.15 1.03 16 16 C -0.14 -1.07 9.55 22.37 0.21 -0.86 16 17 C -0.05 -0.25 5.42 -19.88 -0.11 -0.35 16 18 C -0.09 -0.11 2.81 71.24 0.20 0.09 16 19 O -0.56 -2.25 12.74 -148.98 -1.90 -4.15 16 20 Si 0.77 -0.90 29.78 68.60 2.04 1.14 16 21 C -0.16 -0.46 8.67 22.28 0.19 -0.27 16 22 C -0.07 -0.19 10.04 22.25 0.22 0.03 16 23 C -0.21 -1.09 9.04 22.36 0.20 -0.88 16 24 C -0.12 0.75 7.38 31.12 0.23 0.98 16 25 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 26 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 27 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 28 H 0.06 -0.24 8.14 -2.38 -0.02 -0.26 16 29 H 0.06 -0.16 7.85 -2.39 -0.02 -0.18 16 30 H 0.09 -0.09 7.90 -2.39 -0.02 -0.11 16 31 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.42 -3.65 8.71 -92.71 -0.81 -4.46 16 33 H 0.13 -0.79 8.14 -2.39 -0.02 -0.81 16 34 H 0.13 -0.78 8.14 -2.39 -0.02 -0.80 16 35 H 0.07 0.25 7.60 -2.38 -0.02 0.24 16 36 H 0.06 0.27 7.64 -2.39 -0.02 0.25 16 37 H 0.13 0.92 8.06 -2.91 -0.02 0.90 16 38 H 0.10 -0.27 7.96 -2.39 -0.02 -0.28 16 39 H 0.40 -1.79 8.74 -74.06 -0.65 -2.44 16 40 H -0.30 -1.85 7.11 99.48 0.71 -1.14 16 41 H -0.28 -0.69 7.11 99.48 0.71 0.02 16 42 H 0.15 -0.24 4.87 -2.91 -0.01 -0.25 16 43 H 0.16 -0.44 8.06 -2.91 -0.02 -0.47 16 44 H 0.14 0.44 6.30 -2.91 -0.02 0.42 16 45 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 46 H 0.11 -0.83 8.10 -2.39 -0.02 -0.85 16 Total: 0.00 -21.88 380.97 -0.66 -22.54 By element: Atomic # 1 Polarization: -11.22 SS G_CDS: -0.43 Total: -11.64 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 4.51 Total: 4.68 kcal Atomic # 7 Polarization: 2.06 SS G_CDS: -2.32 Total: -0.26 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -4.48 Total: -16.46 kcal Atomic # 14 Polarization: -0.90 SS G_CDS: 2.04 Total: 1.14 kcal Total: -21.88 -0.66 -22.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535612_4549614.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.521 kcal (2) G-P(sol) polarization free energy of solvation -21.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds